A reference genome for pea provides insight into legume genome evolution.

Publication Overview
TitleA reference genome for pea provides insight into legume genome evolution.
AuthorsKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J
TypeJournal Article
Journal NameNature genetics
Volume51
Issue9
Year2019
Page(s)1411-1422
CitationKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J. A reference genome for pea provides insight into legume genome evolution.. Nature genetics. 2019 Sep; 51(9):1411-1422.

Abstract

We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.

Features
This publication contains information about 64,038 features:
Feature NameUniquenameType
Pisum_contig014606Pisum_contig014606genetic_marker
Pisum_contig014613Pisum_contig014613genetic_marker
Pisum_contig029562Pisum_contig029562genetic_marker
Pisum_contig029564Pisum_contig029564genetic_marker
Pisum_contig029566Pisum_contig029566genetic_marker
Pisum_contig029579Pisum_contig029579genetic_marker
Pisum_contig029581Pisum_contig029581genetic_marker
Pisum_contig029582Pisum_contig029582genetic_marker
Pisum_contig029584Pisum_contig029584genetic_marker
Pisum_contig029588Pisum_contig029588genetic_marker
Pisum_contig029589Pisum_contig029589genetic_marker
Pisum_contig034804Pisum_contig034804genetic_marker
Pisum_contig057064Pisum_contig057064genetic_marker
Pisum_contig058423Pisum_contig058423genetic_marker
Pisum_contig058430Pisum_contig058430genetic_marker
Pisum_contig058431Pisum_contig058431genetic_marker
Pisum_contig063423Pisum_contig063423genetic_marker
Pisum_contig070533Pisum_contig070533genetic_marker
Pisum_contig081392Pisum_contig081392genetic_marker
Pisum_contig092680Pisum_contig092680genetic_marker
Pisum_contig136387Pisum_contig136387genetic_marker
Pisum_contig136395Pisum_contig136395genetic_marker
Pisum_contig136398Pisum_contig136398genetic_marker
Pisum_contig180146Pisum_contig180146genetic_marker
Pisum_contig184490Pisum_contig184490genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Pea-Cameor/Melrose-RIL-2019
Stocks
This publication contains information about 2 stocks:
Stock NameUniquenameType
MelroseMelroseaccession
Cameor/Melrose-RILCameor/Melrose-RILpopulation
Properties
Additional details for this publication include:
Property NameValue
Publication ModelPrint-Electronic
ISSN1546-1718
eISSN1546-1718
Publication Date2019 Sep
Journal AbbreviationNat. Genet.
DOI10.1038/s41588-019-0480-1
Elocation10.1038/s41588-019-0480-1
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountryUnited States