A reference genome for pea provides insight into legume genome evolution.

Publication Overview
TitleA reference genome for pea provides insight into legume genome evolution.
AuthorsKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J
TypeJournal Article
Journal NameNature genetics
Volume51
Issue9
Year2019
Page(s)1411-1422
CitationKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J. A reference genome for pea provides insight into legume genome evolution.. Nature genetics. 2019 Sep; 51(9):1411-1422.

Abstract

We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.

Features
This publication contains information about 64,038 features:
Feature NameUniquenameType
Pisum_contig162627Pisum_contig162627genetic_marker
Pisum_contig190500Pisum_contig190500genetic_marker
Pisum_contig139119Pisum_contig139119genetic_marker
Pisum_contig150788Pisum_contig150788genetic_marker
Pisum_contig161372Pisum_contig161372genetic_marker
Pisum_contig186129Pisum_contig186129genetic_marker
Pisum_contig024018Pisum_contig024018genetic_marker
Pisum_contig031417Pisum_contig031417genetic_marker
Pisum_contig105937Pisum_contig105937genetic_marker
Pisum_contig139118Pisum_contig139118genetic_marker
Pisum_contig142602Pisum_contig142602genetic_marker
Pisum_contig028821Pisum_contig028821genetic_marker
Pisum_contig031439Pisum_contig031439genetic_marker
Pisum_contig031447Pisum_contig031447genetic_marker
Pisum_contig031448Pisum_contig031448genetic_marker
Pisum_contig031450Pisum_contig031450genetic_marker
Pisum_contig062220Pisum_contig062220genetic_marker
Pisum_contig079389Pisum_contig079389genetic_marker
Pisum_contig095953Pisum_contig095953genetic_marker
Pisum_contig129678Pisum_contig129678genetic_marker
Pisum_contig137811Pisum_contig137811genetic_marker
Pisum_contig142596Pisum_contig142596genetic_marker
Pisum_contig154461Pisum_contig154461genetic_marker
Pisum_contig156294Pisum_contig156294genetic_marker
Pisum_contig156621Pisum_contig156621genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Pea-Cameor/Melrose-RIL-2019
Stocks
This publication contains information about 2 stocks:
Stock NameUniquenameType
MelroseMelroseaccession
Cameor/Melrose-RILCameor/Melrose-RILpopulation
Properties
Additional details for this publication include:
Property NameValue
Publication ModelPrint-Electronic
ISSN1546-1718
eISSN1546-1718
Publication Date2019 Sep
Journal AbbreviationNat. Genet.
DOI10.1038/s41588-019-0480-1
Elocation10.1038/s41588-019-0480-1
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountryUnited States