A reference genome for pea provides insight into legume genome evolution.

Publication Overview
TitleA reference genome for pea provides insight into legume genome evolution.
AuthorsKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J
TypeJournal Article
Journal NameNature genetics
Volume51
Issue9
Year2019
Page(s)1411-1422
CitationKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J. A reference genome for pea provides insight into legume genome evolution.. Nature genetics. 2019 Sep; 51(9):1411-1422.

Abstract

We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.

Features
This publication contains information about 64,038 features:
Feature NameUniquenameType
Pisum_contig076837Pisum_contig076837genetic_marker
Pisum_contig139100Pisum_contig139100genetic_marker
Pisum_contig110769Pisum_contig110769genetic_marker
Pisum_contig028808Pisum_contig028808genetic_marker
Pisum_contig028815Pisum_contig028815genetic_marker
Pisum_contig031418Pisum_contig031418genetic_marker
Pisum_contig031423Pisum_contig031423genetic_marker
Pisum_contig031426Pisum_contig031426genetic_marker
Pisum_contig031437Pisum_contig031437genetic_marker
Pisum_contig031449Pisum_contig031449genetic_marker
Pisum_contig076828Pisum_contig076828genetic_marker
Pisum_contig079380Pisum_contig079380genetic_marker
Pisum_contig089316Pisum_contig089316genetic_marker
Pisum_contig089393Pisum_contig089393genetic_marker
Pisum_contig098189Pisum_contig098189genetic_marker
Pisum_contig105931Pisum_contig105931genetic_marker
Pisum_contig105938Pisum_contig105938genetic_marker
Pisum_contig117820Pisum_contig117820genetic_marker
Pisum_contig129680Pisum_contig129680genetic_marker
Pisum_contig129683Pisum_contig129683genetic_marker
Pisum_contig129686Pisum_contig129686genetic_marker
Pisum_contig139113Pisum_contig139113genetic_marker
Pisum_contig155716Pisum_contig155716genetic_marker
Pisum_contig155717Pisum_contig155717genetic_marker
Pisum_contig155718Pisum_contig155718genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Pea-Cameor/Melrose-RIL-2019
Stocks
This publication contains information about 2 stocks:
Stock NameUniquenameType
MelroseMelroseaccession
Cameor/Melrose-RILCameor/Melrose-RILpopulation
Properties
Additional details for this publication include:
Property NameValue
Publication ModelPrint-Electronic
ISSN1546-1718
eISSN1546-1718
Publication Date2019 Sep
Journal AbbreviationNat. Genet.
DOI10.1038/s41588-019-0480-1
Elocation10.1038/s41588-019-0480-1
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountryUnited States