A reference genome for pea provides insight into legume genome evolution.

Publication Overview
TitleA reference genome for pea provides insight into legume genome evolution.
AuthorsKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J
TypeJournal Article
Journal NameNature genetics
Volume51
Issue9
Year2019
Page(s)1411-1422
CitationKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J. A reference genome for pea provides insight into legume genome evolution.. Nature genetics. 2019 Sep; 51(9):1411-1422.

Abstract

We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.

Features
This publication contains information about 64,038 features:
Feature NameUniquenameType
Pisum_contig202720Pisum_contig202720genetic_marker
Pisum_contig036711Pisum_contig036711genetic_marker
Pisum_contig036728Pisum_contig036728genetic_marker
Pisum_contig162561Pisum_contig162561genetic_marker
Pisum_contig205706Pisum_contig205706genetic_marker
Pisum_contig208005Pisum_contig208005genetic_marker
Pisum_contig032901Pisum_contig032901genetic_marker
Pisum_contig036724Pisum_contig036724genetic_marker
Pisum_contig069793Pisum_contig069793genetic_marker
Pisum_contig163315Pisum_contig163315genetic_marker
Pisum_contig160226Pisum_contig160226genetic_marker
Pisum_contig032886Pisum_contig032886genetic_marker
Pisum_contig114116Pisum_contig114116genetic_marker
Pisum_contig011335Pisum_contig011335genetic_marker
Pisum_contig017128Pisum_contig017128genetic_marker
Pisum_contig036685Pisum_contig036685genetic_marker
Pisum_contig036717Pisum_contig036717genetic_marker
Pisum_contig036719Pisum_contig036719genetic_marker
Pisum_contig036726Pisum_contig036726genetic_marker
Pisum_contig047479Pisum_contig047479genetic_marker
Pisum_contig047485Pisum_contig047485genetic_marker
Pisum_contig047486Pisum_contig047486genetic_marker
Pisum_contig056132Pisum_contig056132genetic_marker
Pisum_contig087987Pisum_contig087987genetic_marker
Pisum_contig114141Pisum_contig114141genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Pea-Cameor/Melrose-RIL-2019
Stocks
This publication contains information about 2 stocks:
Stock NameUniquenameType
MelroseMelroseaccession
Cameor/Melrose-RILCameor/Melrose-RILpopulation
Properties
Additional details for this publication include:
Property NameValue
Publication ModelPrint-Electronic
ISSN1546-1718
eISSN1546-1718
Publication Date2019 Sep
Journal AbbreviationNat. Genet.
DOI10.1038/s41588-019-0480-1
Elocation10.1038/s41588-019-0480-1
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountryUnited States