A reference genome for pea provides insight into legume genome evolution.

Publication Overview
TitleA reference genome for pea provides insight into legume genome evolution.
AuthorsKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J
TypeJournal Article
Journal NameNature genetics
Volume51
Issue9
Year2019
Page(s)1411-1422
CitationKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J. A reference genome for pea provides insight into legume genome evolution.. Nature genetics. 2019 Sep; 51(9):1411-1422.

Abstract

We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.

Features
This publication contains information about 64,038 features:
Feature NameUniquenameType
Pisum_contig165138Pisum_contig165138genetic_marker
Pisum_contig165608Pisum_contig165608genetic_marker
Pisum_contig165610Pisum_contig165610genetic_marker
Pisum_contig196046Pisum_contig196046genetic_marker
Pisum_contig032887Pisum_contig032887genetic_marker
Pisum_contig047470Pisum_contig047470genetic_marker
Pisum_contig114130Pisum_contig114130genetic_marker
Pisum_contig163317Pisum_contig163317genetic_marker
Pisum_contig183003Pisum_contig183003genetic_marker
Pisum_contig036704Pisum_contig036704genetic_marker
Pisum_contig165609Pisum_contig165609genetic_marker
Pisum_contig183004Pisum_contig183004genetic_marker
Pisum_contig147851Pisum_contig147851genetic_marker
Pisum_contig194519Pisum_contig194519genetic_marker
Pisum_contig032888Pisum_contig032888genetic_marker
Pisum_contig032896Pisum_contig032896genetic_marker
Pisum_contig036691Pisum_contig036691genetic_marker
Pisum_contig036693Pisum_contig036693genetic_marker
Pisum_contig036708Pisum_contig036708genetic_marker
Pisum_contig036713Pisum_contig036713genetic_marker
Pisum_contig036715Pisum_contig036715genetic_marker
Pisum_contig036716Pisum_contig036716genetic_marker
Pisum_contig036718Pisum_contig036718genetic_marker
Pisum_contig036720Pisum_contig036720genetic_marker
Pisum_contig036725Pisum_contig036725genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Pea-Cameor/Melrose-RIL-2019
Stocks
This publication contains information about 2 stocks:
Stock NameUniquenameType
MelroseMelroseaccession
Cameor/Melrose-RILCameor/Melrose-RILpopulation
Properties
Additional details for this publication include:
Property NameValue
Publication ModelPrint-Electronic
ISSN1546-1718
eISSN1546-1718
Publication Date2019 Sep
Journal AbbreviationNat. Genet.
DOI10.1038/s41588-019-0480-1
Elocation10.1038/s41588-019-0480-1
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountryUnited States