A reference genome for pea provides insight into legume genome evolution.

Publication Overview
TitleA reference genome for pea provides insight into legume genome evolution.
AuthorsKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J
TypeJournal Article
Journal NameNature genetics
Volume51
Issue9
Year2019
Page(s)1411-1422
CitationKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J. A reference genome for pea provides insight into legume genome evolution.. Nature genetics. 2019 Sep; 51(9):1411-1422.

Abstract

We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.

Features
This publication contains information about 64,038 features:
Feature NameUniquenameType
Pisum_contig036729Pisum_contig036729genetic_marker
Pisum_contig047477Pisum_contig047477genetic_marker
Pisum_contig047483Pisum_contig047483genetic_marker
Pisum_contig047489Pisum_contig047489genetic_marker
Pisum_contig047492Pisum_contig047492genetic_marker
Pisum_contig114113Pisum_contig114113genetic_marker
Pisum_contig114127Pisum_contig114127genetic_marker
Pisum_contig114136Pisum_contig114136genetic_marker
Pisum_contig114139Pisum_contig114139genetic_marker
Pisum_contig163313Pisum_contig163313genetic_marker
Pisum_contig165136Pisum_contig165136genetic_marker
Pisum_contig165605Pisum_contig165605genetic_marker
Pisum_contig165613Pisum_contig165613genetic_marker
Pisum_contig196048Pisum_contig196048genetic_marker
Pisum_contig011341Pisum_contig011341genetic_marker
Pisum_contig040547Pisum_contig040547genetic_marker
Pisum_contig047501Pisum_contig047501genetic_marker
Pisum_contig032890Pisum_contig032890genetic_marker
Pisum_contig047481Pisum_contig047481genetic_marker
Pisum_contig047482Pisum_contig047482genetic_marker
Pisum_contig047495Pisum_contig047495genetic_marker
Pisum_contig047499Pisum_contig047499genetic_marker
Pisum_contig128431Pisum_contig128431genetic_marker
Pisum_contig137006Pisum_contig137006genetic_marker
Pisum_contig165617Pisum_contig165617genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Pea-Cameor/Melrose-RIL-2019
Stocks
This publication contains information about 2 stocks:
Stock NameUniquenameType
MelroseMelroseaccession
Cameor/Melrose-RILCameor/Melrose-RILpopulation
Properties
Additional details for this publication include:
Property NameValue
Publication ModelPrint-Electronic
ISSN1546-1718
eISSN1546-1718
Publication Date2019 Sep
Journal AbbreviationNat. Genet.
DOI10.1038/s41588-019-0480-1
Elocation10.1038/s41588-019-0480-1
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountryUnited States