A reference genome for pea provides insight into legume genome evolution.

Publication Overview
TitleA reference genome for pea provides insight into legume genome evolution.
AuthorsKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J
TypeJournal Article
Journal NameNature genetics
Volume51
Issue9
Year2019
Page(s)1411-1422
CitationKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J. A reference genome for pea provides insight into legume genome evolution.. Nature genetics. 2019 Sep; 51(9):1411-1422.

Abstract

We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.

Features
This publication contains information about 64,038 features:
Feature NameUniquenameType
Pisum_contig177703Pisum_contig177703genetic_marker
Pisum_contig177704Pisum_contig177704genetic_marker
Pisum_contig180447Pisum_contig180447genetic_marker
Pisum_contig180448Pisum_contig180448genetic_marker
Pisum_contig180449Pisum_contig180449genetic_marker
Pisum_contig180450Pisum_contig180450genetic_marker
Pisum_contig180453Pisum_contig180453genetic_marker
Pisum_contig180456Pisum_contig180456genetic_marker
Pisum_contig180458Pisum_contig180458genetic_marker
Pisum_contig195055Pisum_contig195055genetic_marker
Pisum_contig195056Pisum_contig195056genetic_marker
Pisum_contig128432Pisum_contig128432genetic_marker
Pisum_contig157716Pisum_contig157716genetic_marker
Pisum_contig190280Pisum_contig190280genetic_marker
Pisum_contig011326Pisum_contig011326genetic_marker
Pisum_contig144015Pisum_contig144015genetic_marker
Pisum_contig162079Pisum_contig162079genetic_marker
Pisum_contig162084Pisum_contig162084genetic_marker
Pisum_contig203118Pisum_contig203118genetic_marker
Pisum_contig084915Pisum_contig084915genetic_marker
Pisum_contig162080Pisum_contig162080genetic_marker
Pisum_contig073458Pisum_contig073458genetic_marker
Pisum_contig161736Pisum_contig161736genetic_marker
Pisum_contig127539Pisum_contig127539genetic_marker
Pisum_contig137025Pisum_contig137025genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Pea-Cameor/Melrose-RIL-2019
Stocks
This publication contains information about 2 stocks:
Stock NameUniquenameType
MelroseMelroseaccession
Cameor/Melrose-RILCameor/Melrose-RILpopulation
Properties
Additional details for this publication include:
Property NameValue
Publication ModelPrint-Electronic
ISSN1546-1718
eISSN1546-1718
Publication Date2019 Sep
Journal AbbreviationNat. Genet.
DOI10.1038/s41588-019-0480-1
Elocation10.1038/s41588-019-0480-1
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountryUnited States