A reference genome for pea provides insight into legume genome evolution.

Publication Overview
TitleA reference genome for pea provides insight into legume genome evolution.
AuthorsKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J
TypeJournal Article
Journal NameNature genetics
Volume51
Issue9
Year2019
Page(s)1411-1422
CitationKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J. A reference genome for pea provides insight into legume genome evolution.. Nature genetics. 2019 Sep; 51(9):1411-1422.

Abstract

We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.

Features
This publication contains information about 64,038 features:
Feature NameUniquenameType
Pisum_contig016196Pisum_contig016196genetic_marker
Pisum_contig016201Pisum_contig016201genetic_marker
Pisum_contig070511Pisum_contig070511genetic_marker
Pisum_contig078427Pisum_contig078427genetic_marker
Pisum_contig093465Pisum_contig093465genetic_marker
Pisum_contig156785Pisum_contig156785genetic_marker
Pisum_contig154173Pisum_contig154173genetic_marker
Pisum_contig006335Pisum_contig006335genetic_marker
Pisum_contig006336Pisum_contig006336genetic_marker
Pisum_contig006356Pisum_contig006356genetic_marker
Pisum_contig006365Pisum_contig006365genetic_marker
Pisum_contig006381Pisum_contig006381genetic_marker
Pisum_contig016178Pisum_contig016178genetic_marker
Pisum_contig016183Pisum_contig016183genetic_marker
Pisum_contig016186Pisum_contig016186genetic_marker
Pisum_contig016188Pisum_contig016188genetic_marker
Pisum_contig016189Pisum_contig016189genetic_marker
Pisum_contig016194Pisum_contig016194genetic_marker
Pisum_contig016197Pisum_contig016197genetic_marker
Pisum_contig016199Pisum_contig016199genetic_marker
Pisum_contig016200Pisum_contig016200genetic_marker
Pisum_contig041606Pisum_contig041606genetic_marker
Pisum_contig060041Pisum_contig060041genetic_marker
Pisum_contig065297Pisum_contig065297genetic_marker
Pisum_contig065311Pisum_contig065311genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Pea-Cameor/Melrose-RIL-2019
Stocks
This publication contains information about 2 stocks:
Stock NameUniquenameType
MelroseMelroseaccession
Cameor/Melrose-RILCameor/Melrose-RILpopulation
Properties
Additional details for this publication include:
Property NameValue
Publication ModelPrint-Electronic
ISSN1546-1718
eISSN1546-1718
Publication Date2019 Sep
Journal AbbreviationNat. Genet.
DOI10.1038/s41588-019-0480-1
Elocation10.1038/s41588-019-0480-1
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountryUnited States