A reference genome for pea provides insight into legume genome evolution.

Publication Overview
TitleA reference genome for pea provides insight into legume genome evolution.
AuthorsKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J
TypeJournal Article
Journal NameNature genetics
Volume51
Issue9
Year2019
Page(s)1411-1422
CitationKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J. A reference genome for pea provides insight into legume genome evolution.. Nature genetics. 2019 Sep; 51(9):1411-1422.

Abstract

We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.

Features
This publication contains information about 64,038 features:
Feature NameUniquenameType
Pisum_contig136319Pisum_contig136319genetic_marker
Pisum_contig137100Pisum_contig137100genetic_marker
Pisum_contig137102Pisum_contig137102genetic_marker
Pisum_contig137106Pisum_contig137106genetic_marker
Pisum_contig137108Pisum_contig137108genetic_marker
Pisum_contig137111Pisum_contig137111genetic_marker
Pisum_contig140532Pisum_contig140532genetic_marker
Pisum_contig148831Pisum_contig148831genetic_marker
Pisum_contig148836Pisum_contig148836genetic_marker
Pisum_contig156899Pisum_contig156899genetic_marker
Pisum_contig156908Pisum_contig156908genetic_marker
Pisum_contig157738Pisum_contig157738genetic_marker
Pisum_contig166694Pisum_contig166694genetic_marker
Pisum_contig166695Pisum_contig166695genetic_marker
Pisum_contig192064Pisum_contig192064genetic_marker
Pisum_contig197512Pisum_contig197512genetic_marker
Pisum_contig073471Pisum_contig073471genetic_marker
Pisum_contig073478Pisum_contig073478genetic_marker
Pisum_contig073480Pisum_contig073480genetic_marker
Pisum_contig023270Pisum_contig023270genetic_marker
Pisum_contig156903Pisum_contig156903genetic_marker
Pisum_contig142926Pisum_contig142926genetic_marker
Pisum_contig023261Pisum_contig023261genetic_marker
Pisum_contig066166Pisum_contig066166genetic_marker
Pisum_contig124850Pisum_contig124850genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Pea-Cameor/Melrose-RIL-2019
Stocks
This publication contains information about 2 stocks:
Stock NameUniquenameType
MelroseMelroseaccession
Cameor/Melrose-RILCameor/Melrose-RILpopulation
Properties
Additional details for this publication include:
Property NameValue
Publication ModelPrint-Electronic
ISSN1546-1718
eISSN1546-1718
Publication Date2019 Sep
Journal AbbreviationNat. Genet.
DOI10.1038/s41588-019-0480-1
Elocation10.1038/s41588-019-0480-1
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountryUnited States