A reference genome for pea provides insight into legume genome evolution.

Publication Overview
TitleA reference genome for pea provides insight into legume genome evolution.
AuthorsKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J
TypeJournal Article
Journal NameNature genetics
Volume51
Issue9
Year2019
Page(s)1411-1422
CitationKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J. A reference genome for pea provides insight into legume genome evolution.. Nature genetics. 2019 Sep; 51(9):1411-1422.

Abstract

We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.

Features
This publication contains information about 64,038 features:
Feature NameUniquenameType
Pisum_contig013621Pisum_contig013621genetic_marker
Pisum_contig013622Pisum_contig013622genetic_marker
Pisum_contig013655Pisum_contig013655genetic_marker
Pisum_contig013670Pisum_contig013670genetic_marker
Pisum_contig013684Pisum_contig013684genetic_marker
Pisum_contig013702Pisum_contig013702genetic_marker
Pisum_contig013704Pisum_contig013704genetic_marker
Pisum_contig013705Pisum_contig013705genetic_marker
Pisum_contig016460Pisum_contig016460genetic_marker
Pisum_contig016461Pisum_contig016461genetic_marker
Pisum_contig016462Pisum_contig016462genetic_marker
Pisum_contig016463Pisum_contig016463genetic_marker
Pisum_contig016465Pisum_contig016465genetic_marker
Pisum_contig056402Pisum_contig056402genetic_marker
Pisum_contig056412Pisum_contig056412genetic_marker
Pisum_contig056430Pisum_contig056430genetic_marker
Pisum_contig084258Pisum_contig084258genetic_marker
Pisum_contig104712Pisum_contig104712genetic_marker
Pisum_contig104713Pisum_contig104713genetic_marker
Pisum_contig104716Pisum_contig104716genetic_marker
Pisum_contig104721Pisum_contig104721genetic_marker
Pisum_contig104726Pisum_contig104726genetic_marker
Pisum_contig104740Pisum_contig104740genetic_marker
Pisum_contig111515Pisum_contig111515genetic_marker
Pisum_contig141809Pisum_contig141809genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Pea-Cameor/Melrose-RIL-2019
Stocks
This publication contains information about 2 stocks:
Stock NameUniquenameType
MelroseMelroseaccession
Cameor/Melrose-RILCameor/Melrose-RILpopulation
Properties
Additional details for this publication include:
Property NameValue
Publication ModelPrint-Electronic
ISSN1546-1718
eISSN1546-1718
Publication Date2019 Sep
Journal AbbreviationNat. Genet.
DOI10.1038/s41588-019-0480-1
Elocation10.1038/s41588-019-0480-1
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountryUnited States