A reference genome for pea provides insight into legume genome evolution.

Publication Overview
TitleA reference genome for pea provides insight into legume genome evolution.
AuthorsKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J
TypeJournal Article
Journal NameNature genetics
Volume51
Issue9
Year2019
Page(s)1411-1422
CitationKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J. A reference genome for pea provides insight into legume genome evolution.. Nature genetics. 2019 Sep; 51(9):1411-1422.

Abstract

We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.

Features
This publication contains information about 64,038 features:
Feature NameUniquenameType
Pisum_contig182199Pisum_contig182199genetic_marker
Pisum_contig185995Pisum_contig185995genetic_marker
Pisum_contig188879Pisum_contig188879genetic_marker
Pisum_contig189475Pisum_contig189475genetic_marker
Pisum_contig192438Pisum_contig192438genetic_marker
Pisum_contig192440Pisum_contig192440genetic_marker
Pisum_contig192833Pisum_contig192833genetic_marker
Pisum_contig199195Pisum_contig199195genetic_marker
Pisum_contig201491Pisum_contig201491genetic_marker
Pisum_contig056426Pisum_contig056426genetic_marker
Pisum_contig104732Pisum_contig104732genetic_marker
Pisum_contig104734Pisum_contig104734genetic_marker
Pisum_contig118341Pisum_contig118341genetic_marker
Pisum_contig148692Pisum_contig148692genetic_marker
Pisum_contig156672Pisum_contig156672genetic_marker
Pisum_contig182186Pisum_contig182186genetic_marker
Pisum_contig182195Pisum_contig182195genetic_marker
Pisum_contig192439Pisum_contig192439genetic_marker
Pisum_contig198278Pisum_contig198278genetic_marker
Pisum_contig013701Pisum_contig013701genetic_marker
Pisum_contig084281Pisum_contig084281genetic_marker
Pisum_contig104720Pisum_contig104720genetic_marker
Pisum_contig104725Pisum_contig104725genetic_marker
Pisum_contig156679Pisum_contig156679genetic_marker
Pisum_contig163053Pisum_contig163053genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Pea-Cameor/Melrose-RIL-2019
Stocks
This publication contains information about 2 stocks:
Stock NameUniquenameType
MelroseMelroseaccession
Cameor/Melrose-RILCameor/Melrose-RILpopulation
Properties
Additional details for this publication include:
Property NameValue
Publication ModelPrint-Electronic
ISSN1546-1718
eISSN1546-1718
Publication Date2019 Sep
Journal AbbreviationNat. Genet.
DOI10.1038/s41588-019-0480-1
Elocation10.1038/s41588-019-0480-1
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountryUnited States