A reference genome for pea provides insight into legume genome evolution.

Publication Overview
TitleA reference genome for pea provides insight into legume genome evolution.
AuthorsKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J
TypeJournal Article
Journal NameNature genetics
Volume51
Issue9
Year2019
Page(s)1411-1422
CitationKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J. A reference genome for pea provides insight into legume genome evolution.. Nature genetics. 2019 Sep; 51(9):1411-1422.

Abstract

We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.

Features
This publication contains information about 64,038 features:
Feature NameUniquenameType
Pisum_contig140812Pisum_contig140812genetic_marker
Pisum_contig171609Pisum_contig171609genetic_marker
Pisum_contig178887Pisum_contig178887genetic_marker
Pisum_contig144771Pisum_contig144771genetic_marker
Pisum_contig026309Pisum_contig026309genetic_marker
Pisum_contig026312Pisum_contig026312genetic_marker
Pisum_contig028425Pisum_contig028425genetic_marker
Pisum_contig061003Pisum_contig061003genetic_marker
Pisum_contig067623Pisum_contig067623genetic_marker
Pisum_contig067633Pisum_contig067633genetic_marker
Pisum_contig091193Pisum_contig091193genetic_marker
Pisum_contig099492Pisum_contig099492genetic_marker
Pisum_contig099495Pisum_contig099495genetic_marker
Pisum_contig099498Pisum_contig099498genetic_marker
Pisum_contig099500Pisum_contig099500genetic_marker
Pisum_contig099504Pisum_contig099504genetic_marker
Pisum_contig102431Pisum_contig102431genetic_marker
Pisum_contig122702Pisum_contig122702genetic_marker
Pisum_contig122709Pisum_contig122709genetic_marker
Pisum_contig122712Pisum_contig122712genetic_marker
Pisum_contig122719Pisum_contig122719genetic_marker
Pisum_contig145514Pisum_contig145514genetic_marker
Pisum_contig146167Pisum_contig146167genetic_marker
Pisum_contig149952Pisum_contig149952genetic_marker
Pisum_contig171485Pisum_contig171485genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Pea-Cameor/Melrose-RIL-2019
Stocks
This publication contains information about 2 stocks:
Stock NameUniquenameType
MelroseMelroseaccession
Cameor/Melrose-RILCameor/Melrose-RILpopulation
Properties
Additional details for this publication include:
Property NameValue
Publication ModelPrint-Electronic
ISSN1546-1718
eISSN1546-1718
Publication Date2019 Sep
Journal AbbreviationNat. Genet.
DOI10.1038/s41588-019-0480-1
Elocation10.1038/s41588-019-0480-1
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountryUnited States