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Marker Overview
| Name | BARC-PV_1.0_Chr02_3915879_G_T |
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| dbSNP ID | 715647803 |
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| SNP Array ID | | BARCBean6K_1: | BARC-PV_1.0_Chr02_3915879_G_T | | BARCBean6K_3: | BARC-PV_1.0_Chr02_3915879_G_T |
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| Type | SNP |
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| SNP Alleles | G/T |
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| 5' Flanking Sequence | TTtGTCTAGAAAAGATAAAGAATATAATGTACAGAACAGAAGAGACACGTTGTGGAACAT |
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| 3' Flanking Sequence | AGTGAAGCATGATCCAGTTGACAATGGTGTTAGACTTCTTGAATTGGCAGAGTAGCGTCT |
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| Species | Phaseolus vulgaris |
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| Publication | [view all] |
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| Contact | Qijian Song
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| Associated With | GWAS0000349 |
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Libraries
| Library Name | Type |
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| BARCBean6K_1 | SNP_chip |
| BARCBean6K_3 | SNP_chip |
References
External references for this genetic_marker
Alignments
The following features are aligned
| Feature Name | Type | Location | Analysis | Reference |
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| Chr02 | supercontig | Chr02:3915879..3915879 . | Phaseolus vulgaris G19833 genome v2.1 | Zia B, Shi A, Olaoye D, Xiong H, Ravelombola W, Gepts P, Schwartz HF, Brick MA, Otto K, Ogg B, Chen S. Genome-Wide Association Study and Genomic Prediction for Bacterial Wilt Resistance in Common Bean (Phaseolus vulgaris) Core Collection.. Frontiers in genetics. 2022; 13:853114. |
Publications
| Year | Publication |
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| 2015 | Song Q, Jia G, Hyten DL, Jenkins J, Hwang EY, Schroeder SG, Osorno JM, Schmutz J, Jackson SA, McClean PE, Cregan PB. SNP Assay Development for Linkage Map Construction, Anchoring Whole-Genome Sequence, and Other Genetic and Genomic Applications in Common Bean. G3 (Bethesda, Md.). 2015 Aug 28; 5(11):2285-90. |
Sequence
>BARC-PV_1.0_Chr02_3915879_G_T ID=BARC-PV_1.0_Chr02_3915879_G_T; Name=BARC-PV_1.0_Chr02_3915879_G_T; organism=Phaseolus vulgaris; type=genetic_marker; length=121bp
TTtGTCTAGAAAAGATAAAGAATATAATGTACAGAACAGAAGAGACACGT
TGTGGAACATKAGTGAAGCATGATCCAGTTGACAATGGTGTTAGACTTCT
TGAATTGGCAGAGTAGCGTCT
Annotated Terms
The
following terms have been associated with
this genetic_marker:
Vocabulary: Pulse Trait Ontology
| Term | Definition |
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| 156:Bacterial wilt resistance | Bacterial wilt resistance |
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