GWAS0000349 | PulseDB

Genome Location

GWAS Overview


GWAS Label	GWAS0000349 [ MapViewer ]
Published Symbol	ss715647803
Trait Name	Bacterial wilt resistance
Trait Alias	N/A
GWAS Marker	BARC-PV_1.0_Chr02_3915879_G_T
GWAS Study	Bean-Bacterial_Wilt_Resistance-Zia-2022
Genome Assembly	Phaseolus vulgaris G19833 genome v2.1
Statistical Mothod	Tassel_MLM
Experimental Model	N/A
GWAS Panel	N/A
LOD	2.77
P Value	N/A
R2	7.86
Unique key	4791-BWR.ss715647803
MAF	7.2
Allele	G/T
Comments	Allele order is resistant/susceptible

Terms

The following terms have been associated with this GWAS:

Vocabulary: **Pulse Trait Ontology**
Term	Definition
156:Bacterial wilt resistance	Bacterial wilt resistance

Genome Location


Name	Type	Location	Analysis	MapViewer
Chr02	supercontig	Chr02:3915879..3915879	Phaseolus vulgaris G19833 genome v2.1	View

Publications


Year	Publication
2022	Zia B, Shi A, Olaoye D, Xiong H, Ravelombola W, Gepts P, Schwartz HF, Brick MA, Otto K, Ogg B, Chen S. Genome-Wide Association Study and Genomic Prediction for Bacterial Wilt Resistance in Common Bean (Phaseolus vulgaris) Core Collection.. Frontiers in genetics. 2022; 13:853114.

Properties


Property Name	Value
Unique key	4791-BWR.ss715647803
Published symbol	ss715647803
MAF	7.2
Allele	G/T
R2	7.86
LOD	2.77
Statistical method	Tassel_MLM
Comments	Allele order is resistant/susceptible