Cicer_arietinum_v1_Contig101

Contig Overview
NameCicer_arietinum_v1_Contig101
Unique NameCicer_arietinum_v1_Contig101
Typecontig
OrganismCicer arietinum (chickpea)
Sequence length546
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
GR395660ESTGR395660:3..160 +Cicer arietinum unigene v1n/a
GR915772ESTGR915772:1..222 +Cicer arietinum unigene v1n/a
HO062819ESTHO062819:1..365 +Cicer arietinum unigene v1n/a
GR917703ESTGR917703:2..318 +Cicer arietinum unigene v1n/a
HO064119ESTHO064119:2..360 +Cicer arietinum unigene v1n/a
GR400266ESTGR400266:2..366 -Cicer arietinum unigene v1n/a
HO062716ESTHO062716:364..499 -Cicer arietinum unigene v1n/a
HO062764ESTHO062764:2..546 -Cicer arietinum unigene v1n/a
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Cicer arietinum unigene v1Cicer arietinum unigene v1contig
Analyses
This contig is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum unigene v12010-12-27
InterProScan analysis for Cicer arietinum unigene v12010-12-29
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
GR395660GR395660Cicer arietinumEST
GR915772GR915772Cicer arietinumEST
HO062819HO062819Cicer arietinumEST
GR917703GR917703Cicer arietinumEST
HO064119HO064119Cicer arietinumEST
GR400266GR400266Cicer arietinumEST
HO062716HO062716Cicer arietinumEST
HO062764HO062764Cicer arietinumEST


InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 13..70
score
NoneNo IPR availableSEGsegsegcoord: 1..24
score: NAcoord: 30..45
score: NAcoord: 50..61
score
NoneNo IPR availableSEGsegsegcoord: 4..14
score
NoneNo IPR availableSEGsegsegcoord: 5..78
score
NoneNo IPR availableSEGsegsegcoord: 24..47
score
IPR006706Extensin repeatPFAMPF04554Extensin_2coord: 21..75
score: 0.0

Sequences
The following sequences are available for this feature:

contig sequence

>Cicer_arietinum_v1_Contig101 ID=Cicer_arietinum_v1_Contig101; Name=Cicer_arietinum_v1_Contig101; organism=Cicer arietinum; type=contig; length=546bp
GACTAGAACAGGGGAATATATTTATTTGGTTTGTCAGTCAACTTGATAAA
CCAAACTTTGAAAATTACAACGCATGCACGCCACTGCAGACACGTGGATG
CTGGGGCAGTGCCTTATAGCTGTGCTAATACAACAAAAAACAAAAATTAA
ATAAATAAACGCAGCTCTCTTAACAATATTAATCAAACACTGACGAAATA
TATGTGAGAAGAATCCCCTCAATCTTCTTTTTGCAACGTCCACGGCTTTC
TTTGCTTTCACACTTTCTGTTTAGATCCATATAGTGTGATGCCCAAGTAT
CAGCTATCTAGTAATGGTAAGGCGGAGGAGGTGATTTATAATAACAGTGT
GGTGGAGGTGGGGAATGGACTGGAGGAGGAGAGTGGTACTTATAAGGCTT
CTTGTAGGGTGGGGGAGGAGAATGGTAAACTGGGTGAGGAATGTGAGGGG
GGTAGGTGTGCACTGGTGGTGGGGGAGAATGGTAAATAGGATGAGGATGA
GGGTACTTGTGGACCGGTGGTGGTGGAGAGTGGTAAATAGGGTGAG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: Molecular Function
TermDefinition
GO:0005199structural constituent of cell wall
Vocabulary: Biological Process
TermDefinition
GO:0009664plant-type cell wall organization
Vocabulary: INTERPRO
TermDefinition
IPR006706Extensin_dom