Cicer_arietinum_v1_Contig1015

Contig Overview
NameCicer_arietinum_v1_Contig1015
Unique NameCicer_arietinum_v1_Contig1015
Typecontig
OrganismCicer arietinum (chickpea)
Sequence length583
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
GR917917ESTGR917917:1..377 +Cicer arietinum unigene v1n/a
FE671913ESTFE671913:99..495 +Cicer arietinum unigene v1n/a
FE672518ESTFE672518:106..583 +Cicer arietinum unigene v1n/a
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Cicer arietinum unigene v1Cicer arietinum unigene v1contig
Analyses
This contig is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum unigene v12010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs Trembl2010-12-28
InterProScan analysis for Cicer arietinum unigene v12010-12-29
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
GR917917GR917917Cicer arietinumEST
FE671913FE671913Cicer arietinumEST
FE672518FE672518Cicer arietinumEST


Homology
[Close]
BLAST of Cicer_arietinum_v1_Contig1015 vs. TrEMBL
Match: C6TMH9_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.339e-11
Identity = 51/116 (43.97%), Postives = 60/116 (51.72%), Query Frame = -2 
Query:  265 RDRSPIPEDISRSPQPSKSRKYSRSPE-GSPQK--STSPGNDRVVATQDGFDYSDGP*VK-------XXXXXXXXXXXPKANGXXXXXXXXXXXXXXXXXXPIEEDDDNRRHSPSP 582
            R+RSP+ ED S+S +PSK RK+S SP+  SP+K   TSPGNDR+   QDG DYSDGP  K                  PK NG                  PI+EDDDN R S SP
Sbjct:  187 RERSPVSEDRSQSREPSKIRKHSASPDQSSPRKRGDTSPGNDRLATHQDGSDYSDGPRGKSRSPASPARDRDEGGYDSPKVNG---HSRSPSRSPRDDDRSPIDEDDDNHRRSQSP 299
The following BLAST results are available for this feature:
BLAST of Cicer_arietinum_v1_Contig1015 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 1
Match NameE-valueIdentityDescription
C6TMH9_SOYBN4.339e-1143.97Putative uncharacterized protein OS=Glycine max PE... [more]
back to top
InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 1..44
score
NoneNo IPR availableSEGsegsegcoord: 3..14
score: NAcoord: 19..37
score
NoneNo IPR availableSEGsegsegcoord: 44..53
score

Sequences
The following sequences are available for this feature:

contig sequence

>Cicer_arietinum_v1_Contig1015 ID=Cicer_arietinum_v1_Contig1015; Name=Cicer_arietinum_v1_Contig1015; organism=Cicer arietinum; type=contig; length=583bp
CTCACAAAATCACTTTCATTTTAAATTACGACAACACTAGAAACAATGGT
CACATATATTCTAGCAGAAATAACAAATGTAGCAACCATCAGAGGTTTAA
AATTAAAAATAAACATACAACAAAACCGTTGTTCATAACCATAAGCATCA
ATTCCCAGTTTTTTAAAATAATTGTGCAGTAATTAAGATATTGTGCATTT
AAAAAACAAAGCATATAAATATCCTGGCCACGTCCTGAGTGATTTATAAG
AAAAATACTTCTTAAGGTGATGGTGAGTGACGGCGGTTGTCATCATCTTC
CTCTATGGGGCTCCTATCATCCCTGGGGCTGCGGCTGCGGCTACGGCTAC
GGCTGCGGCTGCGGCCATTAGCCTTAGGGCTATCATCGTTGTCCCTTGAG
GGGCTCCTACTCTTCACTCAAGGACCATCGCTATAATCAAACCCATCTTG
GGTTGCGACAACCCTATCATTACCAGGAGATGTGCTCTTTTGAGGACTGC
CTTCAGGAGATCGACTATACTTCCTTGACTTGGAGGGCTGAGGACTCCGT
GATATATCTTCAGGAATTGGGCTTCGGTCTCTT
back to top