Cicer_arietinum_v1_Contig1022

Contig Overview


Name	Cicer_arietinum_v1_Contig1022
Unique Name	Cicer_arietinum_v1_Contig1022
Type	contig
Organism	Cicer arietinum (chickpea)
Sequence length	360

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
GR917802	EST	GR917802:1..360 +	Cicer arietinum unigene v1	n/a
GR917968	EST	GR917968:31..360 -	Cicer arietinum unigene v1	n/a
GR915017	EST	GR915017:1..352 +	Cicer arietinum unigene v1	n/a
GR913360	EST	GR913360:4..360 +	Cicer arietinum unigene v1	n/a

Unigenes

This contig is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	contig

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs Swissprot	2010-12-28
KEGG analysis for Cicer arietinum unigene v1	2011-01-05
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide	2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Relationships

The following EST feature(s) are a part of this contig:


Feature Name	Unique Name	Species	Type
GR917802	GR917802	Cicer arietinum	EST
GR917968	GR917968	Cicer arietinum	EST
GR915017	GR915017	Cicer arietinum	EST
GR913360	GR913360	Cicer arietinum	EST

Homology

[Close]

BLAST of Cicer_arietinum_v1_Contig1022 vs. SwissProt
Match: ETFD_RAT (Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial OS=Rattus norvegicus GN=Etfdh PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.530e-14
Identity = 31/46 (67.39%), Postives = 37/46 (80.43%), Query Frame = 3

Query:   36 DEQNQLKLQINAQNCLHCKACDIKDPKQNIEWTVPEGGGGPGYSVM 173
            ++ +  +LQINAQNC+HCK CDIKDP QNI W VPEGGGGP Y+ M
Sbjct:  571 EQGDGFRLQINAQNCVHCKTCDIKDPSQNINWVVPEGGGGPAYNGM 616

[Close]

BLAST of Cicer_arietinum_v1_Contig1022 vs. SwissProt
Match: ETFD_PONAB (Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial OS=Pongo abelii GN=ETFDH PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.530e-14
Identity = 31/46 (67.39%), Postives = 37/46 (80.43%), Query Frame = 3

Query:   36 DEQNQLKLQINAQNCLHCKACDIKDPKQNIEWTVPEGGGGPGYSVM 173
            ++ +  +LQINAQNC+HCK CDIKDP QNI W VPEGGGGP Y+ M
Sbjct:  572 EQGDGFRLQINAQNCVHCKTCDIKDPSQNINWVVPEGGGGPAYNGM 617

[Close]

BLAST of Cicer_arietinum_v1_Contig1022 vs. SwissProt
Match: ETFD_PIG (Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial OS=Sus scrofa GN=ETFDH PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 2.530e-14
Identity = 31/46 (67.39%), Postives = 37/46 (80.43%), Query Frame = 3

Query:   36 DEQNQLKLQINAQNCLHCKACDIKDPKQNIEWTVPEGGGGPGYSVM 173
            ++ +  +LQINAQNC+HCK CDIKDP QNI W VPEGGGGP Y+ M
Sbjct:  572 EQGDGFRLQINAQNCVHCKTCDIKDPSQNINWVVPEGGGGPAYNGM 617

[Close]

BLAST of Cicer_arietinum_v1_Contig1022 vs. SwissProt
Match: ETFD_MOUSE (Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial OS=Mus musculus GN=Etfdh PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.530e-14
Identity = 31/46 (67.39%), Postives = 37/46 (80.43%), Query Frame = 3

Query:   36 DEQNQLKLQINAQNCLHCKACDIKDPKQNIEWTVPEGGGGPGYSVM 173
            ++ +  +LQINAQNC+HCK CDIKDP QNI W VPEGGGGP Y+ M
Sbjct:  571 EQGDGFRLQINAQNCVHCKTCDIKDPSQNINWVVPEGGGGPAYNGM 616

[Close]

BLAST of Cicer_arietinum_v1_Contig1022 vs. SwissProt
Match: ETFD_HUMAN (Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial OS=Homo sapiens GN=ETFDH PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 2.530e-14
Identity = 31/46 (67.39%), Postives = 37/46 (80.43%), Query Frame = 3

Query:   36 DEQNQLKLQINAQNCLHCKACDIKDPKQNIEWTVPEGGGGPGYSVM 173
            ++ +  +LQINAQNC+HCK CDIKDP QNI W VPEGGGGP Y+ M
Sbjct:  572 EQGDGFRLQINAQNCVHCKTCDIKDPSQNINWVVPEGGGGPAYNGM 617

[Close]

BLAST of Cicer_arietinum_v1_Contig1022 vs. SwissProt
Match: ETFD_BOVIN (Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial OS=Bos taurus GN=ETFDH PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.530e-14
Identity = 31/46 (67.39%), Postives = 37/46 (80.43%), Query Frame = 3

Query:   36 DEQNQLKLQINAQNCLHCKACDIKDPKQNIEWTVPEGGGGPGYSVM 173
            ++ +  +LQINAQNC+HCK CDIKDP QNI W VPEGGGGP Y+ M
Sbjct:  572 EQGDGFRLQINAQNCVHCKTCDIKDPSQNINWVVPEGGGGPAYNGM 617

[Close]

BLAST of Cicer_arietinum_v1_Contig1022 vs. SwissProt
Match: ETFD_CAEEL (Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial OS=Caenorhabditis elegans GN=let-721 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 4.315e-14
Identity = 30/45 (66.67%), Postives = 37/45 (82.22%), Query Frame = 3

Query:   39 EQNQLKLQINAQNCLHCKACDIKDPKQNIEWTVPEGGGGPGYSVM 173
            ++++ +LQINAQNC+HCK CDIKDP+QNI W  PEGGGGP Y  M
Sbjct:  553 DESKKRLQINAQNCIHCKTCDIKDPQQNINWVTPEGGGGPKYEGM 597

[Close]

BLAST of Cicer_arietinum_v1_Contig1022 vs. SwissProt
Match: ETFD_PSEAE (Electron transfer flavoprotein-ubiquinone oxidoreductase OS=Pseudomonas aeruginosa GN=PA2953 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.231e-13
Identity = 30/48 (62.50%), Postives = 34/48 (70.83%), Query Frame = 3

Query:   30 VADEQNQLKLQINAQNCLHCKACDIKDPKQNIEWTVPEGGGGPGYSVM 173
            VA++    + QINAQNC+HCK CDIKDP QNI W  PEG GGP Y  M
Sbjct:  504 VANDDGSKRFQINAQNCVHCKTCDIKDPAQNITWVAPEGTGGPNYPNM 551

[Close]

BLAST of Cicer_arietinum_v1_Contig1022 vs. SwissProt
Match: ETFD_ACIAD (Probable electron transfer flavoprotein-ubiquinone oxidoreductase OS=Acinetobacter sp. (strain ADP1) GN=etfD PE=4 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.813e-12
Identity = 29/48 (60.42%), Postives = 33/48 (68.75%), Query Frame = 3

Query:   30 VADEQNQLKLQINAQNCLHCKACDIKDPKQNIEWTVPEGGGGPGYSVM 173
            V + +   + QINA NC+HCK CDIKDP QNI W  PEGGGGP Y  M
Sbjct:  523 VDEGEGNKRFQINAANCVHCKTCDIKDPSQNITWVTPEGGGGPNYPNM 570

[Close]

BLAST of Cicer_arietinum_v1_Contig1022 vs. SwissProt
Match: ETFD_YEAST (Probable electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial OS=Saccharomyces cerevisiae GN=YOR356W PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.274e-12
Identity = 29/50 (58.00%), Postives = 40/50 (80.00%), Query Frame = 3

Query:   27 YVADEQNQL--KLQINAQNCLHCKACDIKDPKQNIEWTVPEGGGGPGYSV 170
            +V DE++ +  +LQIN+QNC+HCK CDIK P+Q+I W VPEGG GP Y++
Sbjct:  581 FVKDEKSPVGTRLQINSQNCIHCKTCDIKAPRQDITWKVPEGGDGPKYTL 630

[Close]

BLAST of Cicer_arietinum_v1_Contig1022 vs. TrEMBL
Match: B9MY62_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_741497 PE=4 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.322e-21
Identity = 45/49 (91.84%), Postives = 48/49 (97.96%), Query Frame = 3

Query:   27 YVADEQNQLKLQINAQNCLHCKACDIKDPKQNIEWTVPEGGGGPGYSVM 173
            Y++DE +QLKLQINAQNCLHCKACDIKDPKQNIEWTVPEGGGGPGYSVM
Sbjct:  376 YISDENSQLKLQINAQNCLHCKACDIKDPKQNIEWTVPEGGGGPGYSVM 424

[Close]

BLAST of Cicer_arietinum_v1_Contig1022 vs. TrEMBL
Match: D7U1V3_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_102.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00010835001 PE=4 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.505e-20
Identity = 44/49 (89.80%), Postives = 47/49 (95.92%), Query Frame = 3

Query:   27 YVADEQNQLKLQINAQNCLHCKACDIKDPKQNIEWTVPEGGGGPGYSVM 173
            YV DE+ +L+LQINAQNCLHCKACDIKDPKQNIEWTVPEGGGGPGYSVM
Sbjct:  488 YVPDEKGELRLQINAQNCLHCKACDIKDPKQNIEWTVPEGGGGPGYSVM 536

[Close]

BLAST of Cicer_arietinum_v1_Contig1022 vs. TrEMBL
Match: B9SU11_RICCO (Electron transfer flavoprotein-ubiquinone oxidoreductase, putative OS=Ricinus communis GN=RCOM_0454620 PE=4 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.966e-20
Identity = 43/49 (87.76%), Postives = 47/49 (95.92%), Query Frame = 3

Query:   27 YVADEQNQLKLQINAQNCLHCKACDIKDPKQNIEWTVPEGGGGPGYSVM 173
            YV+DE+ QLKL INAQNCLHCKACDIKDPKQNIEWTVPEGGGGPGY++M
Sbjct:  561 YVSDERGQLKLHINAQNCLHCKACDIKDPKQNIEWTVPEGGGGPGYTIM 609

[Close]

BLAST of Cicer_arietinum_v1_Contig1022 vs. TrEMBL
Match: C5WVE6_SORBI (Putative uncharacterized protein Sb01g017140 OS=Sorghum bicolor GN=Sb01g017140 PE=4 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 9.756e-20
Identity = 43/49 (87.76%), Postives = 46/49 (93.88%), Query Frame = 3

Query:   27 YVADEQNQLKLQINAQNCLHCKACDIKDPKQNIEWTVPEGGGGPGYSVM 173
            YV+DE+   KLQINAQNCLHCKACDIKDPKQNIEWTVPEGGGGPGY+VM
Sbjct:  538 YVSDEKGDPKLQINAQNCLHCKACDIKDPKQNIEWTVPEGGGGPGYTVM 586

[Close]

BLAST of Cicer_arietinum_v1_Contig1022 vs. TrEMBL
Match: Q94HZ6_ORYSA (Putative electron transfer oxidoreductase OS=Oryza sativa GN=OSJNBa0076F20.3 PE=4 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.707e-19
Identity = 42/49 (85.71%), Postives = 44/49 (89.80%), Query Frame = 3

Query:   27 YVADEQNQLKLQINAQNCLHCKACDIKDPKQNIEWTVPEGGGGPGYSVM 173
            YV DE+   KL INAQNCLHCKACDIKDPKQNIEWTVPEGGGGPGY+VM
Sbjct:  488 YVTDEKGDQKLHINAQNCLHCKACDIKDPKQNIEWTVPEGGGGPGYTVM 536

[Close]

BLAST of Cicer_arietinum_v1_Contig1022 vs. TrEMBL
Match: Q337B8_ORYSJ (Electron transfer flavoprotein-ubiquinone oxidoreductase,mitochondrial, putative, expressed OS=Oryza sativa subsp. japonica GN=LOC_Os10g37210 PE=4 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.707e-19
Identity = 42/49 (85.71%), Postives = 44/49 (89.80%), Query Frame = 3

Query:   27 YVADEQNQLKLQINAQNCLHCKACDIKDPKQNIEWTVPEGGGGPGYSVM 173
            YV DE+   KL INAQNCLHCKACDIKDPKQNIEWTVPEGGGGPGY+VM
Sbjct:  527 YVTDEKGDQKLHINAQNCLHCKACDIKDPKQNIEWTVPEGGGGPGYTVM 575

[Close]

BLAST of Cicer_arietinum_v1_Contig1022 vs. TrEMBL
Match: Q337B7_ORYSJ (Electron transfer flavoprotein-ubiquinone oxidoreductase,mitochondrial, putative, expressed OS=Oryza sativa subsp. japonica GN=LOC_Os10g37210 PE=4 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.707e-19
Identity = 42/49 (85.71%), Postives = 44/49 (89.80%), Query Frame = 3

Query:   27 YVADEQNQLKLQINAQNCLHCKACDIKDPKQNIEWTVPEGGGGPGYSVM 173
            YV DE+   KL INAQNCLHCKACDIKDPKQNIEWTVPEGGGGPGY+VM
Sbjct:  524 YVTDEKGDQKLHINAQNCLHCKACDIKDPKQNIEWTVPEGGGGPGYTVM 572

[Close]

BLAST of Cicer_arietinum_v1_Contig1022 vs. TrEMBL
Match: Q0IWD9_ORYSJ (Os10g0516300 protein (Fragment) OS=Oryza sativa subsp. japonica GN=Os10g0516300 PE=4 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.707e-19
Identity = 42/49 (85.71%), Postives = 44/49 (89.80%), Query Frame = 3

Query:   27 YVADEQNQLKLQINAQNCLHCKACDIKDPKQNIEWTVPEGGGGPGYSVM 173
            YV DE+   KL INAQNCLHCKACDIKDPKQNIEWTVPEGGGGPGY+VM
Sbjct:  328 YVTDEKGDQKLHINAQNCLHCKACDIKDPKQNIEWTVPEGGGGPGYTVM 376

[Close]

BLAST of Cicer_arietinum_v1_Contig1022 vs. TrEMBL
Match: B9G6M0_ORYSJ (Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_32159 PE=4 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.707e-19
Identity = 42/49 (85.71%), Postives = 44/49 (89.80%), Query Frame = 3

Query:   27 YVADEQNQLKLQINAQNCLHCKACDIKDPKQNIEWTVPEGGGGPGYSVM 173
            YV DE+   KL INAQNCLHCKACDIKDPKQNIEWTVPEGGGGPGY+VM
Sbjct:  534 YVTDEKGDQKLHINAQNCLHCKACDIKDPKQNIEWTVPEGGGGPGYTVM 582

[Close]

BLAST of Cicer_arietinum_v1_Contig1022 vs. TrEMBL
Match: B8BHV8_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_34318 PE=4 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.707e-19
Identity = 42/49 (85.71%), Postives = 44/49 (89.80%), Query Frame = 3

Query:   27 YVADEQNQLKLQINAQNCLHCKACDIKDPKQNIEWTVPEGGGGPGYSVM 173
            YV DE+   KL INAQNCLHCKACDIKDPKQNIEWTVPEGGGGPGY+VM
Sbjct:  534 YVTDEKGDQKLHINAQNCLHCKACDIKDPKQNIEWTVPEGGGGPGYTVM 582

[Close]

BLAST of Cicer_arietinum_v1_Contig1022 vs. TAIR peptide
Match: AT2G43400.1 (| Symbols: ETFQO | electron-transfer flavoprotein:ubiquinone oxidoreductase | chr2:18021304-18025041 FORWARD LENGTH=633)

HSP 1 Score: 97.0561 bits (240), Expect = 2.461e-21
Identity = 41/49 (83.67%), Postives = 45/49 (91.84%), Query Frame = 3

Query:   27 YVADEQNQLKLQINAQNCLHCKACDIKDPKQNIEWTVPEGGGGPGYSVM 173
            Y+ DE+ + KLQINAQNCLHCKACDIKDPKQNIEWTVPEGGGGP YS+M
Sbjct:  585 YIEDEEGKPKLQINAQNCLHCKACDIKDPKQNIEWTVPEGGGGPAYSLM 633

The following BLAST results are available for this feature:

BLAST of Cicer_arietinum_v1_Contig1022 vs. SwissProt
BLAST of Cicer_arietinum_v1_Contig1022 vs. TrEMBL
BLAST of Cicer_arietinum_v1_Contig1022 vs. TAIR peptide

BLAST of Cicer_arietinum_v1_Contig1022 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 10


Match Name	E-value	Identity	Description
ETFD_RAT	2.530e-14	67.39	Electron transfer flavoprotein-ubiquinone oxidored...	[more]
ETFD_PONAB	2.530e-14	67.39	Electron transfer flavoprotein-ubiquinone oxidored...	[more]
ETFD_PIG	2.530e-14	67.39	Electron transfer flavoprotein-ubiquinone oxidored...	[more]
ETFD_MOUSE	2.530e-14	67.39	Electron transfer flavoprotein-ubiquinone oxidored...	[more]
ETFD_HUMAN	2.530e-14	67.39	Electron transfer flavoprotein-ubiquinone oxidored...	[more]
ETFD_BOVIN	2.530e-14	67.39	Electron transfer flavoprotein-ubiquinone oxidored...	[more]
ETFD_CAEEL	4.315e-14	66.67	Electron transfer flavoprotein-ubiquinone oxidored...	[more]
ETFD_PSEAE	6.231e-13	62.50	Electron transfer flavoprotein-ubiquinone oxidored...	[more]
ETFD_ACIAD	1.813e-12	60.42	Probable electron transfer flavoprotein-ubiquinone...	[more]
ETFD_YEAST	5.274e-12	58.00	Probable electron transfer flavoprotein-ubiquinone...	[more]

BLAST of Cicer_arietinum_v1_Contig1022 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
B9MY62_POPTR	2.322e-21	91.84	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
D7U1V3_VITVI	1.505e-20	89.80	Whole genome shotgun sequence of line PN40024, sca...	[more]
B9SU11_RICCO	1.966e-20	87.76	Electron transfer flavoprotein-ubiquinone oxidored...	[more]
C5WVE6_SORBI	9.756e-20	87.76	Putative uncharacterized protein Sb01g017140 OS=So...	[more]
Q94HZ6_ORYSA	3.707e-19	85.71	Putative electron transfer oxidoreductase OS=Oryza...	[more]
Q337B8_ORYSJ	3.707e-19	85.71	Electron transfer flavoprotein-ubiquinone oxidored...	[more]
Q337B7_ORYSJ	3.707e-19	85.71	Electron transfer flavoprotein-ubiquinone oxidored...	[more]
Q0IWD9_ORYSJ	3.707e-19	85.71	Os10g0516300 protein (Fragment) OS=Oryza sativa su...	[more]
B9G6M0_ORYSJ	3.707e-19	85.71	Putative uncharacterized protein OS=Oryza sativa s...	[more]
B8BHV8_ORYSI	3.707e-19	85.71	Putative uncharacterized protein OS=Oryza sativa s...	[more]

BLAST of Cicer_arietinum_v1_Contig1022 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 1


Match Name	E-value	Identity	Description
AT2G43400.1	2.461e-21	83.67	\| Symbols: ETFQO \| electron-transfer flavoprotein:...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR10617	FLAVOPROTEIN-UBIQUINONE OXIDOREDUCTASE	coord: 9..57 score: 4.4
None	No IPR available	PANTHER	PTHR10617:SF1	ELECTRON TRANSFER FLAVOPROTEIN-UBIQUINONE OXIDOREDUCTASE	coord: 9..57 score: 4.4
None	No IPR available	SUPERFAMILY	54862	4Fe-4S ferredoxins	coord: 17..57 score: 2.5

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>Cicer_arietinum_v1_Contig1022 ID=Cicer_arietinum_v1_Contig1022; Name=Cicer_arietinum_v1_Contig1022; organism=Cicer arietinum; type=contig; length=360bp
GATTTCGAGGCGGCCGCCCGGGCAGGTACGTTGCAGATGAGCAAAATCAA
CTAAAGTTGCAGATTAATGCTCAAAATTGTTTACATTGCAAGGCTTGTGA
TATCAAAGATCCAAAGCAAAATATTGAGTGGACAGTGCCGGAAGGAGGTG
GAGGTCCGGGATACTCAGTCATGTAGATCCAGGAATCAGTCATACTGTGG
TCCCTGAAGTTACGACTTCCGGAATGTAAAATAAGTTGCTAAGGTTCCTC
ATCTTAAACAACAACAAGCATCTTACACTGTTCTGTTAGAAATTATGTCT
GTTCAGTGTTTTTCGCATTTTAAATATTCTGTGTCATGTACCTTGGGCCC
GGGCGGCCGC

Search form

Cicer_arietinum_v1_Contig1022