Cicer_arietinum_v1_Contig1046

Contig Overview
NameCicer_arietinum_v1_Contig1046
Unique NameCicer_arietinum_v1_Contig1046
Typecontig
OrganismCicer arietinum (chickpea)
Sequence length574
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
GR911817ESTGR911817:1..295 +Cicer arietinum unigene v1n/a
GR914763ESTGR914763:1..461 +Cicer arietinum unigene v1n/a
GR409438ESTGR409438:122..446 +Cicer arietinum unigene v1n/a
GR914698ESTGR914698:1..454 +Cicer arietinum unigene v1n/a
GR911810ESTGR911810:123..474 -Cicer arietinum unigene v1n/a
GR394750ESTGR394750:122..574 +Cicer arietinum unigene v1n/a
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Cicer arietinum unigene v1Cicer arietinum unigene v1contig
Analyses
This contig is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum unigene v12010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs Trembl2010-12-28
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
GR911817GR911817Cicer arietinumEST
GR914763GR914763Cicer arietinumEST
GR409438GR409438Cicer arietinumEST
GR914698GR914698Cicer arietinumEST
GR911810GR911810Cicer arietinumEST
GR394750GR394750Cicer arietinumEST


Homology
[Close]
BLAST of Cicer_arietinum_v1_Contig1046 vs. TrEMBL
Match: B7FKH5_MEDTR (Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.658e-15
Identity = 41/50 (82.00%), Postives = 44/50 (88.00%), Query Frame = 1 
Query:   19 RGTSPRKSPLAGSPDNRSQDGRSLTPRSVSPQGRPKASRSPSPRNSNGDE 168
            +  SPRKSPL  SPDNRS+ GRSLTPRSVSP+GRP ASRSPSPRNSNGDE
Sbjct:  231 KSVSPRKSPLRESPDNRSRGGRSLTPRSVSPRGRPGASRSPSPRNSNGDE 280
[Close]
BLAST of Cicer_arietinum_v1_Contig1046 vs. TrEMBL
Match: B7FJQ5_MEDTR (Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.207e-11
Identity = 34/47 (72.34%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:   28 SPRKSPLAGSPDNRSQDGRSLTPRSVSPQGRPKASRSPSPRNSNGDE 168
            SP  SP   SPD RS+DGRS T RSVSP+GRP+AS+SPSPRNS+GDE
Sbjct:  221 SPSPSPRRESPDTRSRDGRSPTSRSVSPRGRPEASQSPSPRNSDGDE 267
[Close]
BLAST of Cicer_arietinum_v1_Contig1046 vs. TrEMBL
Match: O82021_MEDSA (Putative arginine/serine-rich splicing factor OS=Medicago sativa GN=sclp PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 2.318e-9
Identity = 34/50 (68.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:   19 RGTSPRKSPLAGSPDNRSQDGRSLTPRSVSPQGRPKASRSPSPRNSNGDE 168
            +  SPRKSPL  SPD+RS+ GRS TPRS      P ASRSPSPRNSNGDE
Sbjct:  243 KSVSPRKSPLRESPDSRSRGGRSFTPRS------PGASRSPSPRNSNGDE 286
[Close]
BLAST of Cicer_arietinum_v1_Contig1046 vs. TrEMBL
Match: B9SZR9_RICCO (Serine/arginine rich splicing factor, putative OS=Ricinus communis GN=RCOM_0460560 PE=4 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 3.955e-9
Identity = 35/58 (60.34%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:   19 RGTSPRKS--------PLAGSPDNRSQDGRSLTPRSVSPQGRPKASRSPSPRNSNGDE 168
            R  SPR+S        P   SPD RS+DGRS TPRS SP GR  ASRSPSPRNS+ DE
Sbjct:  200 RSPSPRRSRSPLKNSPPKGASPDRRSRDGRSPTPRSASPHGRAPASRSPSPRNSDVDE 257
The following BLAST results are available for this feature:
BLAST of Cicer_arietinum_v1_Contig1046 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 4
Match NameE-valueIdentityDescription
B7FKH5_MEDTR1.658e-1582.00Putative uncharacterized protein OS=Medicago trunc... [more]
B7FJQ5_MEDTR7.207e-1172.34Putative uncharacterized protein OS=Medicago trunc... [more]
O82021_MEDSA2.318e-968.00Putative arginine/serine-rich splicing factor OS=M... [more]
B9SZR9_RICCO3.955e-960.34Serine/arginine rich splicing factor, putative OS=... [more]
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Sequences
The following sequences are available for this feature:

contig sequence

>Cicer_arietinum_v1_Contig1046 ID=Cicer_arietinum_v1_Contig1046; Name=Cicer_arietinum_v1_Contig1046; organism=Cicer arietinum; type=contig; length=574bp
GATTAGCGTGGTCGCGGCCGAGGTACTTCCCCCAGGAAAAGTCCACTTGC
TGGAAGTCCTGATAATCGTAGCCAGGATGGAAGGTCTCTTACCCCTCGCA
GTGTCTCACCGCAAGGTCGCCCTAAAGCTTCCCGAAGCCCATCTCCCCGA
AATTCAAATGGCGATGAATAAGTGATTTTTCAGAAGTATTCCAGAGACAC
CTTGACTAGTGCACCCGTTGCTGCTGTCTTGATAATATTCCGTGATTTGG
TCAATGTGAATGAATGGTCTTGTCAAAGTCATTGAAGGATTTTATTATCT
AAGTGCAGTTGGTAGGGTCAGACTTCCTTGGTGTTTGAATGTTTCTATAT
TTTGATTATGTCGTCTACTTCAGAATTGGGTAACTTTTGGATCTCGTAGT
TGCTAGGTTAATATTTCAGTATGAGAGATTTTTCCATTTTAGCTCTATTC
TATTGTGTTTGCCTTTATCTCTCTCTGTTTCTGCATTTTCATTTCCGTTG
ATATAGTCTGGATGGTTGTGATCTAGTTAAAAGCGCAGTTAATTAGTAAT
TGAAAAACAGAAAATCTGAAGATG
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