Cicer_arietinum_v1_Contig1064

Contig Overview
NameCicer_arietinum_v1_Contig1064
Unique NameCicer_arietinum_v1_Contig1064
Typecontig
OrganismCicer arietinum (chickpea)
Sequence length426
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
GR911844ESTGR911844:1..263 +Cicer arietinum unigene v1n/a
GR913785ESTGR913785:3..426 +Cicer arietinum unigene v1n/a
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Cicer arietinum unigene v1Cicer arietinum unigene v1contig
Analyses
This contig is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum unigene v12010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Trembl2010-12-28
InterProScan analysis for Cicer arietinum unigene v12010-12-29
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
GR911844GR911844Cicer arietinumEST
GR913785GR913785Cicer arietinumEST


Homology
[Close]
BLAST of Cicer_arietinum_v1_Contig1064 vs. TrEMBL
Match: B9RA38_RICCO (Glutamyl-tRNA(Gln) amidotransferase subunit A, putative OS=Ricinus communis GN=RCOM_1503030 PE=4 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.738e-17
Identity = 42/69 (60.87%), Postives = 48/69 (69.57%), Query Frame = 3 
Query:   27 VSNPPXXXXXXXXXXXXXXYAPPNRDHIALALAMAYQEATNHHKQRPPINDLGPNDKIPDASIVAYPPR 233
            +SNPP              YA P++DHIALALAMAYQ  T+HHKQRPPI++LGPNDKIPD  IV  PPR
Sbjct:  509 ISNPPSEGSRRRTTITTGIYARPSQDHIALALAMAYQSVTDHHKQRPPIDNLGPNDKIPDPPIVVIPPR 577
[Close]
BLAST of Cicer_arietinum_v1_Contig1064 vs. TrEMBL
Match: D7UB65_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_24.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00019282001 PE=4 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.695e-14
Identity = 37/62 (59.68%), Postives = 42/62 (67.74%), Query Frame = 3 
Query:   24 QVSNPPXXXXXXXXXXXXXXYAPPNRDHIALALAMAYQEATNHHKQRPPINDLGPNDKIPDA 209
            ++SNPP              YAPPN DHIALALAMAYQ  T HH+QRPPI+DLGPND I D+
Sbjct:  498 KISNPPPDGSRRRSTITTGIYAPPNHDHIALALAMAYQSVTEHHRQRPPIDDLGPNDFIADS 559
[Close]
BLAST of Cicer_arietinum_v1_Contig1064 vs. TrEMBL
Match: Q8H0H8_TOBAC (Amidase-like protein OS=Nicotiana tabacum GN=A19 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.046e-13
Identity = 36/70 (51.43%), Postives = 43/70 (61.43%), Query Frame = 3 
Query:   24 QVSNPPXXXXXXXXXXXXXXYAPPNRDHIALALAMAYQEATNHHKQRPPINDLGPNDKIPDASIVAYPPR 233
            ++ N P              YAPP+ DH+ALALAMAYQ  TNHHKQRPPI+D+GPND IP+      P R
Sbjct:  468 KIPNAPTDDTRRRTTITTGIYAPPDHDHVALALAMAYQSVTNHHKQRPPIDDIGPNDSIPNPPTSMIPAR 537
[Close]
BLAST of Cicer_arietinum_v1_Contig1064 vs. TrEMBL
Match: D7UB66_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_24.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00019284001 PE=4 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.043e-13
Identity = 35/62 (56.45%), Postives = 42/62 (67.74%), Query Frame = 3 
Query:   24 QVSNPPXXXXXXXXXXXXXXYAPPNRDHIALALAMAYQEATNHHKQRPPINDLGPNDKIPDA 209
            ++S+PP              YAPPN DH+ALALAMAYQ  T HH+QRPPI+DLGPND I D+
Sbjct:  537 KISSPPPDGSRRRTTITTGIYAPPNHDHVALALAMAYQSVTEHHRQRPPIDDLGPNDFIVDS 598
[Close]
BLAST of Cicer_arietinum_v1_Contig1064 vs. TrEMBL
Match: B9I436_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_570389 PE=4 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.156e-12
Identity = 34/69 (49.28%), Postives = 42/69 (60.87%), Query Frame = 3 
Query:   27 VSNPPXXXXXXXXXXXXXXYAPPNRDHIALALAMAYQEATNHHKQRPPINDLGPNDKIPDASIVAYPPR 233
            ++NPP              YA PN +H+ALAL MAYQ  T+HHKQ PPI++LGPND IPD   +   PR
Sbjct:   83 IANPPSEGTQRRTTITTGIYARPNHEHVALALVMAYQSVTDHHKQHPPIDNLGPNDSIPDPPTLIIRPR 151
[Close]
BLAST of Cicer_arietinum_v1_Contig1064 vs. TrEMBL
Match: Q9LY24_ARATH (Putative amidase OS=Arabidopsis thaliana GN=T2I1_70 PE=4 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.576e-12
Identity = 34/69 (49.28%), Postives = 43/69 (62.32%), Query Frame = 3 
Query:   27 VSNPPXXXXXXXXXXXXXXYAPPNRDHIALALAMAYQEATNHHKQRPPINDLGPNDKIPDASIVAYPPR 233
            +++PP              YAPP RDHIALAL MAYQ  T+ H++RPPI+DLGP+D IP+      PPR
Sbjct:  585 ITDPPTNSCRRRTTINAGIYAPPERDHIALALGMAYQSVTDAHRKRPPIDDLGPDDSIPNPPRALIPPR 653
[Close]
BLAST of Cicer_arietinum_v1_Contig1064 vs. TrEMBL
Match: D7M0I1_ARALY (Amidase family protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_350003 PE=4 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.394e-12
Identity = 34/69 (49.28%), Postives = 42/69 (60.87%), Query Frame = 3 
Query:   27 VSNPPXXXXXXXXXXXXXXYAPPNRDHIALALAMAYQEATNHHKQRPPINDLGPNDKIPDASIVAYPPR 233
            +S+PP              YAPP  DHIALAL MAYQ  T+ H++RPPI+DLGP+D IP+      PPR
Sbjct:  550 ISDPPTNSCRRRTTINAGIYAPPEHDHIALALGMAYQSVTDAHRKRPPIDDLGPDDSIPNPPRALIPPR 618
[Close]
BLAST of Cicer_arietinum_v1_Contig1064 vs. TrEMBL
Match: C5Y3R5_SORBI (Putative uncharacterized protein Sb05g020350 OS=Sorghum bicolor GN=Sb05g020350 PE=4 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.739e-12
Identity = 34/58 (58.62%), Postives = 39/58 (67.24%), Query Frame = 3 
Query:   27 VSNPPXXXXXXXXXXXXXXYAPPNRDHIALALAMAYQEATNHHKQRPPINDLGPNDKI 200
            + +PP              YAPP+ DHIALALAMAYQ  TNH+KQRPPI+DLGPND I
Sbjct:  561 IEDPPKGGTKRRTTVTTGIYAPPDHDHIALALAMAYQSVTNHNKQRPPIDDLGPNDGI 618
[Close]
BLAST of Cicer_arietinum_v1_Contig1064 vs. TrEMBL
Match: B9ICC9_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_575492 PE=4 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.739e-12
Identity = 37/68 (54.41%), Postives = 41/68 (60.29%), Query Frame = 3 
Query:   27 VSNPPXXXXXXXXXXXXXXYAPPNRDHIALALAMAYQEATNHHKQRPPINDLGPNDKIPDASIVAYPP 230
            +SNPP              YA PN DHIALALAMAYQ  T HHKQRPPI++LGP D +P      YPP
Sbjct:  469 ISNPPSEGTRRRTTITTGIYARPNHDHIALALAMAYQSVTYHHKQRPPIDNLGPGDIMP------YPP 530
[Close]
BLAST of Cicer_arietinum_v1_Contig1064 vs. TrEMBL
Match: B6UHK5_MAIZE (Putative uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.739e-12
Identity = 34/58 (58.62%), Postives = 39/58 (67.24%), Query Frame = 3 
Query:   27 VSNPPXXXXXXXXXXXXXXYAPPNRDHIALALAMAYQEATNHHKQRPPINDLGPNDKI 200
            + NPP              YAPP+ DHIALALAMAYQ  T+H+KQRPPI+DLGPND I
Sbjct:  530 IENPPKGGTKRRTTVTTGIYAPPDHDHIALALAMAYQSVTDHNKQRPPIDDLGPNDVI 587
[Close]
BLAST of Cicer_arietinum_v1_Contig1064 vs. TAIR peptide
Match: AT5G07360.2 (| Symbols: | Amidase family protein | chr5:2326925-2330011 REVERSE LENGTH=652)

HSP 1 Score: 75.0998 bits (183), Expect = 1.581e-14
Identity = 34/69 (49.28%), Postives = 43/69 (62.32%), Query Frame = 3 
Query:   27 VSNPPXXXXXXXXXXXXXXYAPPNRDHIALALAMAYQEATNHHKQRPPINDLGPNDKIPDASIVAYPPR 233
            +++PP              YAPP RDHIALAL MAYQ  T+ H++RPPI+DLGP+D IP+      PPR
Sbjct:  580 ITDPPTNSCRRRTTINAGIYAPPERDHIALALGMAYQSVTDAHRKRPPIDDLGPDDSIPNPPRALIPPR 648
[Close]
BLAST of Cicer_arietinum_v1_Contig1064 vs. TAIR peptide
Match: AT5G07360.1 (| Symbols: | Amidase family protein | chr5:2326925-2330011 REVERSE LENGTH=659)

HSP 1 Score: 75.0998 bits (183), Expect = 1.581e-14
Identity = 34/69 (49.28%), Postives = 43/69 (62.32%), Query Frame = 3 
Query:   27 VSNPPXXXXXXXXXXXXXXYAPPNRDHIALALAMAYQEATNHHKQRPPINDLGPNDKIPDASIVAYPPR 233
            +++PP              YAPP RDHIALAL MAYQ  T+ H++RPPI+DLGP+D IP+      PPR
Sbjct:  587 ITDPPTNSCRRRTTINAGIYAPPERDHIALALGMAYQSVTDAHRKRPPIDDLGPDDSIPNPPRALIPPR 655
The following BLAST results are available for this feature:
BLAST of Cicer_arietinum_v1_Contig1064 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
B9RA38_RICCO7.738e-1760.87Glutamyl-tRNA(Gln) amidotransferase subunit A, put... [more]
D7UB65_VITVI4.695e-1459.68Whole genome shotgun sequence of line PN40024, sca... [more]
Q8H0H8_TOBAC1.046e-1351.43Amidase-like protein OS=Nicotiana tabacum GN=A19 P... [more]
D7UB66_VITVI3.043e-1356.45Whole genome shotgun sequence of line PN40024, sca... [more]
B9I436_POPTR1.156e-1249.28Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
Q9LY24_ARATH2.576e-1249.28Putative amidase OS=Arabidopsis thaliana GN=T2I1_7... [more]
D7M0I1_ARALY4.394e-1249.28Amidase family protein OS=Arabidopsis lyrata subsp... [more]
C5Y3R5_SORBI5.739e-1258.62Putative uncharacterized protein Sb05g020350 OS=So... [more]
B9ICC9_POPTR5.739e-1254.41Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
B6UHK5_MAIZE5.739e-1258.62Putative uncharacterized protein OS=Zea mays PE=2 ... [more]
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BLAST of Cicer_arietinum_v1_Contig1064 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 2
Match NameE-valueIdentityDescription
AT5G07360.21.581e-1449.28| Symbols: | Amidase family protein | chr5:232692... [more]
AT5G07360.11.581e-1449.28| Symbols: | Amidase family protein | chr5:232692... [more]
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InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 27..41
score
NoneNo IPR availablePANTHERPTHR11895:SF3AMIDASE-RELATEDcoord: 9..80
score: 7.6
NoneNo IPR availableSEGsegsegcoord: 14..27
score
IPR000120AmidasePANTHERPTHR11895AMIDASEcoord: 9..80
score: 7.6

Sequences
The following sequences are available for this feature:

contig sequence

>Cicer_arietinum_v1_Contig1064 ID=Cicer_arietinum_v1_Contig1064; Name=Cicer_arietinum_v1_Contig1064; organism=Cicer arietinum; type=contig; length=426bp
GATTTCGGGAGCGGCCGCCCGGGCAGGTCTCTAATCCCCCATCTGGTGGC
AGCAGAAGAAGAACCACCATCACCACCGGCATTTATGCTCCCCCTAACCG
TGATCACATTGCGCTGGCATTAGCAATGGCTTATCAGGAAGCCACTAATC
ACCATAAACAGCGACCGCCTATTAATGACCTCGGTCCAAATGATAAGATA
CCTGATGCATCTATTGTTGCTTATCCTCCCAGGGTTTTTGGTCCTTGAGC
AACTGGGTGCAACAGCTTCAGCACTGAGTTTTACTTGTAAAAAATGTGTT
CCACTGCTACCAATTACAGCTAGGAGCATTGGTAATTTCTGCTGCGTATC
ATATGTATAGATAATAATCATTTTAGAGACTAAAACTGGGCAAACTATAG
CATGTACCTCGGCCGCGACCACGCTA
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR000120Amidase