Cicer_arietinum_v1_Contig1068

Contig Overview
NameCicer_arietinum_v1_Contig1068
Unique NameCicer_arietinum_v1_Contig1068
Typecontig
OrganismCicer arietinum (chickpea)
Sequence length721
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
GR911808ESTGR911808:1..328 +Cicer arietinum unigene v1n/a
GR914479ESTGR914479:1..388 +Cicer arietinum unigene v1n/a
HO064609ESTHO064609:7..376 +Cicer arietinum unigene v1n/a
GR914831ESTGR914831:39..397 -Cicer arietinum unigene v1n/a
GR398866ESTGR398866:132..721 +Cicer arietinum unigene v1n/a
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Cicer arietinum unigene v1Cicer arietinum unigene v1contig
Analyses
This contig is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum unigene v12010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Trembl2010-12-28
InterProScan analysis for Cicer arietinum unigene v12010-12-29
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
GR911808GR911808Cicer arietinumEST
GR914479GR914479Cicer arietinumEST
HO064609HO064609Cicer arietinumEST
GR914831GR914831Cicer arietinumEST
GR398866GR398866Cicer arietinumEST


Homology
BLAST of Cicer_arietinum_v1_Contig1068 vs. TrEMBL
Match: D7SWJ4_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_31.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00022400001 PE=4 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.700e-12
Identity = 45/88 (51.14%), Postives = 56/88 (63.64%), Query Frame = 1
Query:   37 LTTDEQIMLKDVSNRIRVRGISKSLDFDNVKMGLTDNKRMIKXXXXXXXXRNKELS-FNRICSKLPVIDFGIDKNRALDVIDRVAVAR 297
            LT  +Q ML+++S + R   ISKSLDFD+VK GL  + R+ K         +KEL+   R  S LPVIDFGIDK +ALDVIDRV   R
Sbjct:  481 LTEKDQEMLQNMSKKKRASRISKSLDFDSVKTGLRKHNRLSKSGSYSPTRGSKELAPVTRFSSGLPVIDFGIDKKKALDVIDRVDTVR 568          
BLAST of Cicer_arietinum_v1_Contig1068 vs. TrEMBL
Match: D7SSB0_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_76.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00034887001 PE=4 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 5.117e-9
Identity = 41/95 (43.16%), Postives = 53/95 (55.79%), Query Frame = 1
Query:   16 PGQVPQSLTTDEQIMLKDVSNRIRVRGISKSLDFDNVKMGLTDNKRMIKXXXXXXXXRNKELSFN-RICSKLPVIDFGIDKNRALDVIDRVAVAR 297
            P      LT ++Q ML+DVS R    GISKS +FD  K  L+ + R+ K          K+  F+ R  S +PVIDF ID+ +ALDVIDRV   R
Sbjct:  557 PNSPSPMLTIEDQEMLRDVSKRKLTPGISKSQEFDTAKTRLSKHHRLSKSSSHSPTSETKKELFSIRRPSSVPVIDFDIDRIKALDVIDRVDTIR 651          
BLAST of Cicer_arietinum_v1_Contig1068 vs. TrEMBL
Match: B9T700_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0956920 PE=4 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 1.489e-8
Identity = 41/97 (42.27%), Postives = 54/97 (55.67%), Query Frame = 1
Query:   10 RPPGQVPQSLTTDEQIMLKDVSNRIRVRGISKSLDFDNVKMGLTDNKRMIKXXXXXXXXRNKELSFN-RICSKLPVIDFGIDKNRALDVIDRVAVAR 297
            +P   +P  LT ++Q ML+DV  R +  GISKS +FD  K  L  + R+ K          K+  F  R  S +PVIDF ID+ +ALDVIDRV   R
Sbjct:  540 KPSSPLPM-LTVEDQEMLRDVPKRKKTPGISKSQEFDTAKTRLCKHHRLSKSSSHSPMTETKKDPFPIRRPSSVPVIDFDIDRIKALDVIDRVDTIR 635          
BLAST of Cicer_arietinum_v1_Contig1068 vs. TrEMBL
Match: Q9XID5_ARATH (F23M19.3 OS=Arabidopsis thaliana GN=F23M19.3 PE=4 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 9.651e-8
Identity = 41/93 (44.09%), Postives = 57/93 (61.29%), Query Frame = 1
Query:   37 LTTDEQIMLKDVSNRIRVRGISKSLDFDNV-KMGLTDNKRMIK----XXXXXXXXRNKELSFN-RICSKLPVIDFGIDKNRALDVIDRVAVAR 297
            LTT++Q ML+DVS R +  GISKS +F+ V K  L  + R+ K            +NK+ +F+ R  S +P+IDF ID+ +ALDVIDRV   R
Sbjct:  515 LTTEDQEMLRDVSKRRKTPGISKSQEFETVAKARLCKHHRLSKSSSHSPMMGEMMKNKKDTFSTRRPSSVPIIDFDIDRMKALDVIDRVDTIR 607          
BLAST of Cicer_arietinum_v1_Contig1068 vs. TrEMBL
Match: Q6NQ48_ARATH (At1g34320 OS=Arabidopsis thaliana GN=At1g34320 PE=1 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 9.651e-8
Identity = 41/93 (44.09%), Postives = 57/93 (61.29%), Query Frame = 1
Query:   37 LTTDEQIMLKDVSNRIRVRGISKSLDFDNV-KMGLTDNKRMIK----XXXXXXXXRNKELSFN-RICSKLPVIDFGIDKNRALDVIDRVAVAR 297
            LTT++Q ML+DVS R +  GISKS +F+ V K  L  + R+ K            +NK+ +F+ R  S +P+IDF ID+ +ALDVIDRV   R
Sbjct:  563 LTTEDQEMLRDVSKRRKTPGISKSQEFETVAKARLCKHHRLSKSSSHSPMMGEMMKNKKDTFSTRRPSSVPIIDFDIDRMKALDVIDRVDTIR 655          
BLAST of Cicer_arietinum_v1_Contig1068 vs. TrEMBL
Match: B9MW59_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_1110725 PE=4 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 9.651e-8
Identity = 39/97 (40.21%), Postives = 54/97 (55.67%), Query Frame = 1
Query:   16 PGQVPQSLTTDEQIMLKDVSNRIRVRGISKSLDFDNVKMGLTDNKRMIKXXXXXXXXRNKELSFN-RICSKLPVIDFGIDKNRALDVIDRVAVAR*F 303
            P     +LT ++Q ML+DVS R +  GISKS +FD  K  L+ + R+ K          ++  F  R  S +PV++F ID  +ALDVIDRV   R F
Sbjct:  553 PSSPSPTLTIEDQEMLRDVSKRKKTPGISKSQEFDTAKTRLSKHHRLSKSSSHSPMGETRKDPFPIRRPSSVPVMNFDIDWIKALDVIDRVDTIRSF 649          
BLAST of Cicer_arietinum_v1_Contig1068 vs. TrEMBL
Match: D7KK56_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_473586 PE=4 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 1.260e-7
Identity = 41/93 (44.09%), Postives = 57/93 (61.29%), Query Frame = 1
Query:   37 LTTDEQIMLKDVSNRIRVRGISKSLDFDNV-KMGLTDNKRMIK----XXXXXXXXRNKELSFN-RICSKLPVIDFGIDKNRALDVIDRVAVAR 297
            LTT++Q ML+DVS R +  GISKS +F+ V K  L  + R+ K            +NK+ +F+ R  S +P+IDF ID+ +ALDVIDRV   R
Sbjct:  568 LTTEDQEMLRDVSKRRKTPGISKSQEFETVAKTRLCKHHRLSKSSSHSPMMGEMMKNKKDTFSTRRPSSVPIIDFDIDRVKALDVIDRVDTIR 660          
BLAST of Cicer_arietinum_v1_Contig1068 vs. TrEMBL
Match: C5YYC8_SORBI (Putative uncharacterized protein Sb09g021280 OS=Sorghum bicolor GN=Sb09g021280 PE=4 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 6.256e-7
Identity = 42/98 (42.86%), Postives = 56/98 (57.14%), Query Frame = 1
Query:   16 PGQV---PQSLTTDEQIMLKDVSNRIRVRGISKSLDFDNVKMGLTDNKRMIKXXXXXXXXRN-KELSFNRICSKLPVIDFGIDKNRALDVIDRVAVAR 297
            PG++   P  LT ++Q ML+DV  R  V GISKS +FD  K   +   R+ K         N KEL   R  S LPVIDF ID+ +ALD+IDR+ + +
Sbjct:  550 PGKMNNSPPVLTQEDQDMLRDVKYRKFVPGISKSQEFDT-KSSHSKQSRLSKSNSHSPASGNRKELLPVRRPSMLPVIDFEIDRTKALDLIDRLDILK 646          
BLAST of Cicer_arietinum_v1_Contig1068 vs. TAIR peptide
Match: AT1G34320.1 (| Symbols: | Protein of unknown function (DUF668) | chr1:12520713-12524046 FORWARD LENGTH=657)

HSP 1 Score: 61.2326 bits (147), Expect = 6.481e-10
Identity = 41/93 (44.09%), Postives = 57/93 (61.29%), Query Frame = 1
Query:   37 LTTDEQIMLKDVSNRIRVRGISKSLDFDNV-KMGLTDNKRMIK----XXXXXXXXRNKELSFN-RICSKLPVIDFGIDKNRALDVIDRVAVAR 297
            LTT++Q ML+DVS R +  GISKS +F+ V K  L  + R+ K            +NK+ +F+ R  S +P+IDF ID+ +ALDVIDRV   R
Sbjct:  563 LTTEDQEMLRDVSKRRKTPGISKSQEFETVAKARLCKHHRLSKSSSHSPMMGEMMKNKKDTFSTRRPSSVPIIDFDIDRMKALDVIDRVDTIR 655          
BLAST of Cicer_arietinum_v1_Contig1068 vs. TAIR peptide
Match: AT5G08660.1 (| Symbols: | Protein of unknown function (DUF668) | chr5:2814526-2817845 FORWARD LENGTH=649)

HSP 1 Score: 53.5286 bits (127), Expect = 1.351e-7
Identity = 34/88 (38.64%), Postives = 46/88 (52.27%), Query Frame = 1
Query:   37 LTTDEQIMLKDVSNRIRVRGISKSLDFDNVKMGLTDNKRMIKXXXXXXXXR-NKELSFNRICSKLPVIDFGIDKNRALDVIDRVAVAR 297
            +T +EQ ML++ S R R   +SKS DFD+          + K        R +K  +  R  S  P++DF IDK + LDVIDRV V R
Sbjct:  549 VTDEEQKMLQEASKRKRTPCVSKSQDFDSEYSRARKCDPLSKSSEYFRGVRRSKSAAVKRYSSGFPLLDFAIDKEKVLDVIDRVDVPR 636          
The following BLAST results are available for this feature:
BLAST of Cicer_arietinum_v1_Contig1068 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 8
Match NameE-valueIdentityDescription
D7SWJ4_VITVI1.700e-1251.14Whole genome shotgun sequence of line PN40024, sca... [more]
D7SSB0_VITVI5.117e-943.16Whole genome shotgun sequence of line PN40024, sca... [more]
B9T700_RICCO1.489e-842.27Putative uncharacterized protein OS=Ricinus commun... [more]
Q9XID5_ARATH9.651e-844.09F23M19.3 OS=Arabidopsis thaliana GN=F23M19.3 PE=4 ... [more]
Q6NQ48_ARATH9.651e-844.09At1g34320 OS=Arabidopsis thaliana GN=At1g34320 PE=... [more]
B9MW59_POPTR9.651e-840.21Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
D7KK56_ARALY1.260e-744.09Putative uncharacterized protein OS=Arabidopsis ly... [more]
C5YYC8_SORBI6.256e-742.86Putative uncharacterized protein Sb09g021280 OS=So... [more]
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BLAST of Cicer_arietinum_v1_Contig1068 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 2
Match NameE-valueIdentityDescription
AT1G34320.16.481e-1044.09| Symbols: | Protein of unknown function (DUF668)... [more]
AT5G08660.11.351e-738.64| Symbols: | Protein of unknown function (DUF668)... [more]
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InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 55..62
score
NoneNo IPR availableSEGsegsegcoord: 70..83
score
NoneNo IPR availableSEGsegsegcoord: 1..9
score: NAcoord: 22..34
score

Sequences
The following sequences are available for this feature:

contig sequence

>Cicer_arietinum_v1_Contig1068 ID=Cicer_arietinum_v1_Contig1068; Name=Cicer_arietinum_v1_Contig1068; organism=Cicer arietinum; type=contig; length=721bp
GATTTCGAGCGGCCGCCCGGGCAGGTACCGCAATCACTAACAACCGACGA
GCAGATCATGCTGAAGGATGTAAGTAACAGAATTCGTGTTAGAGGGATCA
GTAAAAGCTTGGACTTCGACAATGTGAAGATGGGGTTGACAGATAACAAA
AGAATGATCAAAAGTAGCAGTTACTCATCAGCTAGTAGAAACAAGGAATT
ATCTTTTAACAGAATTTGCTCTAAGCTTCCTGTGATTGATTTTGGTATCG
ACAAAAATAGAGCACTGGATGTGATTGACAGAGTGGCTGTGGCCAGATAA
TTTGCGCAGACTATTCTTAAGCGCCTTTGATGAAACGATGGTAGGAATAA
GTGAACAGAAGAATGGTACTTTTTTGTGTAAATATTTTACAACCATATTC
ATGCAGCAAGTGTTGGATGCCAGATTTTGGAAGATCTTCTGGCACCCTGG
ATTCTTGATTGATTTTGGTTTTGGCGAAATGTTGTATCGCATTCGCATCA
TGATGTACATATTGCTTTTACCACGGAAGTTGTTGAGATCATAGGTTTTC
TTGGCTGTATCAATGTGACTACAGTGTACACTTTTGTTGGAGCAGGGTGG
ATTCTGTGTTTTTTTAATTCTTTAGTGTATATAGACAATGAGGATTTGGT
ACCTATAGTAGTAAAGCATTGCATGTATTATATGATTATAATTATTTGTT
TGATTTGGTTATCTTTACCTC
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