Cicer_arietinum_v1_Contig1069

Contig Overview
NameCicer_arietinum_v1_Contig1069
Unique NameCicer_arietinum_v1_Contig1069
Typecontig
OrganismCicer arietinum (chickpea)
Sequence length534
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
GR917996ESTGR917996:1..336 +Cicer arietinum unigene v1n/a
GR915248ESTGR915248:1..336 +Cicer arietinum unigene v1n/a
GR917296ESTGR917296:128..534 -Cicer arietinum unigene v1n/a
GR912687ESTGR912687:151..534 -Cicer arietinum unigene v1n/a
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Cicer arietinum unigene v1Cicer arietinum unigene v1contig
Analyses
This contig is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum unigene v12010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide2011-02-03
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
GR917996GR917996Cicer arietinumEST
GR915248GR915248Cicer arietinumEST
GR917296GR917296Cicer arietinumEST
GR912687GR912687Cicer arietinumEST


Homology
[Close]
BLAST of Cicer_arietinum_v1_Contig1069 vs. TAIR peptide
Match: AT3G59540.1 (| Symbols: | Ribosomal L38e protein family | chr3:21995897-21996742 REVERSE LENGTH=69)

HSP 1 Score: 51.9878 bits (123), Expect = 2.304e-7
Identity = 23/34 (67.65%), Postives = 27/34 (79.41%), Query Frame = 3 
Query:  297 IKAQNNQYPLCVFDTDKADKLKQSLPPGLTVQDL 398
            ++     Y LCVFD +KADKLKQSLPPGL+VQDL
Sbjct:   36 VRCSRYLYTLCVFDQEKADKLKQSLPPGLSVQDL 69
[Close]
BLAST of Cicer_arietinum_v1_Contig1069 vs. TAIR peptide
Match: AT2G43460.1 (| Symbols: | Ribosomal L38e protein family | chr2:18046285-18047292 REVERSE LENGTH=69)

HSP 1 Score: 51.9878 bits (123), Expect = 2.304e-7
Identity = 23/34 (67.65%), Postives = 27/34 (79.41%), Query Frame = 3 
Query:  297 IKAQNNQYPLCVFDTDKADKLKQSLPPGLTVQDL 398
            ++     Y LCVFD +KADKLKQSLPPGL+VQDL
Sbjct:   36 VRCSRYLYTLCVFDQEKADKLKQSLPPGLSVQDL 69
The following BLAST results are available for this feature:
BLAST of Cicer_arietinum_v1_Contig1069 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 2
Match NameE-valueIdentityDescription
AT3G59540.12.304e-767.65| Symbols: | Ribosomal L38e protein family | chr3... [more]
AT2G43460.12.304e-767.65| Symbols: | Ribosomal L38e protein family | chr2... [more]
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Sequences
The following sequences are available for this feature:

contig sequence

>Cicer_arietinum_v1_Contig1069 ID=Cicer_arietinum_v1_Contig1069; Name=Cicer_arietinum_v1_Contig1069; organism=Cicer arietinum; type=contig; length=534bp
GATTAGCGTGGTCGCGGCCGAGGTACCATTATTAATGCAATGAAGAAAAA
ATGTTCAAATACATTGAATTAAATTTAGGGGACGCTGAATTATTTGGCAC
ATTGCAAGTTACAACAAAGAAAAACTAAACTTTTTCTCTCCCCTTAAATT
CCTTGTTTGAACTTCCAAAGCAAACCACTCTTAATTTATTGGCAAACAAA
TTTATTAACCACAAAAAGAATCTAGTCACTCCTTGCAAATTCCTTTGTTT
ACATGTTTCCTCCGTATAACATGCACTGTTTGCGACTTGGTGTTCAATTA
AAGCACAGAACAATCAGTACCCACTCTGTGTTTTCGACACCGACAAAGCT
GATAAGTTGAAGCAATCTCTTCCTCCTGGTTTGACTGTTCAAGATCTGTA
GAACAAACGCCAACTGTTTACTTCTTTGAAAAATATTGAAACTCTAGGTT
TTGTGACTGTGTCCTCTCTTTTCGTAATTGCTACTGTAATATCATTTTGT
TTTGTTGCTGTTAAATTTGAAGAAGTTTGGTTTT
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