Cicer_arietinum_v1_Contig1096

Contig Overview


Name	Cicer_arietinum_v1_Contig1096
Unique Name	Cicer_arietinum_v1_Contig1096
Type	contig
Organism	Cicer arietinum (chickpea)
Sequence length	382

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
GR917742	EST	GR917742:1..382 +	Cicer arietinum unigene v1	n/a
GR917089	EST	GR917089:1..363 +	Cicer arietinum unigene v1	n/a

Unigenes

This contig is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	contig

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide	2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Relationships

The following EST feature(s) are a part of this contig:


Feature Name	Unique Name	Species	Type
GR917742	GR917742	Cicer arietinum	EST
GR917089	GR917089	Cicer arietinum	EST

Homology

[Close]

BLAST of Cicer_arietinum_v1_Contig1096 vs. TrEMBL
Match: B9T7P5_RICCO (Microtubule associated protein xmap215, putative OS=Ricinus communis GN=RCOM_0214170 PE=4 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 3.009e-45
Identity = 90/113 (79.65%), Postives = 99/113 (87.61%), Query Frame = 1

Query:   28 KDSNKEDRERLVVRRFKFEDPRIEQIQDLENDMLRYFREDLHRRLLSADFKKQVDGLEMLQKALPSIAKEVIEILDILLRWFVLQFCKSNTTCXXXXXXXXXXXXDILKDDGY 366
            KDSNKEDRER+VVRRFKFE+ RIEQIQDLENDM++YFREDLHRRLLSADFKKQVDGLEMLQKALPSIAKE+IE+LDILLRWFVLQFCKSNTTC            D+L+D+ Y
Sbjct: 1111 KDSNKEDRERMVVRRFKFEELRIEQIQDLENDMMKYFREDLHRRLLSADFKKQVDGLEMLQKALPSIAKELIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDMLRDEAY 1223

[Close]

BLAST of Cicer_arietinum_v1_Contig1096 vs. TrEMBL
Match: B9GIF2_POPTR (Microtubule organization protein OS=Populus trichocarpa GN=MOR2 PE=4 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.070e-42
Identity = 84/113 (74.34%), Postives = 96/113 (84.96%), Query Frame = 1

Query:   28 KDSNKEDRERLVVRRFKFEDPRIEQIQDLENDMLRYFREDLHRRLLSADFKKQVDGLEMLQKALPSIAKEVIEILDILLRWFVLQFCKSNTTCXXXXXXXXXXXXDILKDDGY 366
            KDSNKEDRER+VVRRFKFE+PR+EQ+QDLE+DM++YFREDL+RRLLS DFKKQVDGLEML KALPSI KE+IE+LDILLRWFVLQFCKSNTTC            D L+D+ Y
Sbjct: 1155 KDSNKEDRERMVVRRFKFEEPRMEQVQDLESDMMKYFREDLNRRLLSPDFKKQVDGLEMLHKALPSIGKEIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPDLFDRLRDEAY 1267

[Close]

BLAST of Cicer_arietinum_v1_Contig1096 vs. TrEMBL
Match: B9I0T7_POPTR (Microtubule organization protein OS=Populus trichocarpa GN=MOR1 PE=4 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 3.114e-42
Identity = 83/113 (73.45%), Postives = 95/113 (84.07%), Query Frame = 1

Query:   28 KDSNKEDRERLVVRRFKFEDPRIEQIQDLENDMLRYFREDLHRRLLSADFKKQVDGLEMLQKALPSIAKEVIEILDILLRWFVLQFCKSNTTCXXXXXXXXXXXXDILKDDGY 366
            KDSNKEDRER+VVRRFKFE+PR+EQIQDLE DM++Y REDL+RRLLS DFKKQVDGLEMLQKALPSI  E+IE+LDILL+WFVLQFCKSNTTC            D+L+D+ Y
Sbjct: 1148 KDSNKEDRERMVVRRFKFEEPRMEQIQDLEGDMMKYLREDLNRRLLSLDFKKQVDGLEMLQKALPSIGNEIIEVLDILLKWFVLQFCKSNTTCLLKVLEFLPALFDLLRDEAY 1260

[Close]

BLAST of Cicer_arietinum_v1_Contig1096 vs. TrEMBL
Match: Q8S912_TOBAC (Microtubule bundling polypeptide TMBP200 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 7.669e-41
Identity = 78/114 (68.42%), Postives = 100/114 (87.72%), Query Frame = 1

Query:   28 KDSNKEDRERLVVRRFKFEDPRIEQIQDLENDMLRYFREDLHRRLLSADFKKQVDGLEMLQKALPSIAKEVIEILDILLRWFVLQFCKSNTTCXXXXXXXXXXXXDILKDDGYL 369
            KDS+K +RER+VVRRFKFE+PR+EQIQDLE+D+++YFREDLHRRLLS DFKKQVDG+EMLQKALPSIAKE+IE+LDI+LRWFVL+FC+SNT+C            ++L+++GY+
Sbjct: 1146 KDSHKGERERIVVRRFKFEEPRLEQIQDLESDLMKYFREDLHRRLLSTDFKKQVDGIEMLQKALPSIAKELIEVLDIVLRWFVLRFCESNTSCLLKVLEFLPELFEMLRNEGYM 1259

[Close]

BLAST of Cicer_arietinum_v1_Contig1096 vs. TrEMBL
Match: Q9ZQN6_ARATH (Similar to ch-TOG protein from Homo sapiens OS=Arabidopsis thaliana GN=At2g35630 PE=2 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 4.971e-40
Identity = 80/114 (70.18%), Postives = 95/114 (83.33%), Query Frame = 1

Query:   25 TKDSNKEDRERLVVRRFKFEDPRIEQIQDLENDMLRYFREDLHRRLLSADFKKQVDGLEMLQKALPSIAKEVIEILDILLRWFVLQFCKSNTTCXXXXXXXXXXXXDILKDDGY 366
            TKDSNKEDRER+VVRR KFE+ R EQIQDLENDM+++FREDL +RLLS DFKKQVDGLE+LQKALPS++KE+IE+LD+LLRWFVLQFCKSNTTC            + L+D+ Y
Sbjct:  768 TKDSNKEDRERVVVRRIKFEELRPEQIQDLENDMMKFFREDLQKRLLSPDFKKQVDGLEILQKALPSVSKEIIEVLDVLLRWFVLQFCKSNTTCLLKVLEFLPELFNTLRDEEY 881

[Close]

BLAST of Cicer_arietinum_v1_Contig1096 vs. TrEMBL
Match: Q94FN2_ARATH (MOR1/GEM1 OS=Arabidopsis thaliana GN=At2g35630 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 4.971e-40
Identity = 80/114 (70.18%), Postives = 95/114 (83.33%), Query Frame = 1

Query:   25 TKDSNKEDRERLVVRRFKFEDPRIEQIQDLENDMLRYFREDLHRRLLSADFKKQVDGLEMLQKALPSIAKEVIEILDILLRWFVLQFCKSNTTCXXXXXXXXXXXXDILKDDGY 366
            TKDSNKEDRER+VVRR KFE+ R EQIQDLENDM+++FREDL +RLLS DFKKQVDGLE+LQKALPS++KE+IE+LD+LLRWFVLQFCKSNTTC            + L+D+ Y
Sbjct: 1135 TKDSNKEDRERVVVRRIKFEELRPEQIQDLENDMMKFFREDLQKRLLSPDFKKQVDGLEILQKALPSVSKEIIEVLDVLLRWFVLQFCKSNTTCLLKVLEFLPELFNTLRDEEY 1248

[Close]

BLAST of Cicer_arietinum_v1_Contig1096 vs. TrEMBL
Match: D7TGA8_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_652.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00002244001 PE=4 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 4.971e-40
Identity = 82/113 (72.57%), Postives = 92/113 (81.42%), Query Frame = 1

Query:   28 KDSNKEDRERLVVRRFKFEDPRIEQIQDLENDMLRYFREDLHRRLLSADFKKQVDGLEMLQKALPSIAKEVIEILDILLRWFVLQFCKSNTTCXXXXXXXXXXXXDILKDDGY 366
            KDSNKEDRER+VVRRFKFE+ RIEQIQDLE D+++Y REDL RRLLS DFKKQVDGLEMLQKALPSI KE+IEILDILLRWFVL+FC+SNTTC              L+D+ Y
Sbjct:  105 KDSNKEDRERMVVRRFKFEELRIEQIQDLETDLMKYLREDLQRRLLSTDFKKQVDGLEMLQKALPSIGKEIIEILDILLRWFVLRFCESNTTCLLKVLEFLPELFGTLRDESY 217

[Close]

BLAST of Cicer_arietinum_v1_Contig1096 vs. TrEMBL
Match: D7LII7_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_482523 PE=4 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 2.467e-39
Identity = 80/114 (70.18%), Postives = 94/114 (82.46%), Query Frame = 1

Query:   25 TKDSNKEDRERLVVRRFKFEDPRIEQIQDLENDMLRYFREDLHRRLLSADFKKQVDGLEMLQKALPSIAKEVIEILDILLRWFVLQFCKSNTTCXXXXXXXXXXXXDILKDDGY 366
            TKDSNKEDRER+VVRR KFE+ R EQI DLENDM+++FREDL +RLLS DFKKQVDGLE+LQKALPS++KE+IE+LDILLRWFVLQFCKSNTTC            + L+D+ Y
Sbjct: 1134 TKDSNKEDRERVVVRRIKFEELRPEQILDLENDMMKFFREDLQKRLLSPDFKKQVDGLEILQKALPSVSKEIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFNTLRDEEY 1247

[Close]

BLAST of Cicer_arietinum_v1_Contig1096 vs. TrEMBL
Match: Q5N749_ORYSJ (Os01g0816400 protein OS=Oryza sativa subsp. japonica GN=OSJNBa0085D07.49-1 PE=4 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 4.507e-33
Identity = 70/115 (60.87%), Postives = 90/115 (78.26%), Query Frame = 1

Query:   28 KDSNKEDRERLV-VRRFKFEDPRIEQIQDLENDMLRYFREDLHRRLLSADFKKQVDGLEMLQKALPSIAKEVIEILDILLRWFVLQFCKSNTTCXXXXXXXXXXXXDILKDDGYL 369
            KDSNKE+RER V VR+FKFE+PR EQI +L+ ++ R+FRED+  RL ++DFK+Q+DG+E+LQKALPS  KEVIE+LDILLRWFVL+FC+SNTTC            D+LKD  Y+
Sbjct: 1142 KDSNKEERERRVLVRKFKFEEPRREQIDELKIELFRHFREDVSLRLWNSDFKRQIDGIELLQKALPSSRKEVIELLDILLRWFVLRFCESNTTCLLKVLDFLPELFDVLKDQSYM 1256

[Close]

BLAST of Cicer_arietinum_v1_Contig1096 vs. TrEMBL
Match: B8ABA5_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_04204 PE=4 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 4.507e-33
Identity = 70/115 (60.87%), Postives = 90/115 (78.26%), Query Frame = 1

Query:   28 KDSNKEDRERLV-VRRFKFEDPRIEQIQDLENDMLRYFREDLHRRLLSADFKKQVDGLEMLQKALPSIAKEVIEILDILLRWFVLQFCKSNTTCXXXXXXXXXXXXDILKDDGYL 369
            KDSNKE+RER V VR+FKFE+PR EQI +L+ ++ R+FRED+  RL ++DFK+Q+DG+E+LQKALPS  KEVIE+LDILLRWFVL+FC+SNTTC            D+LKD  Y+
Sbjct: 1143 KDSNKEERERRVLVRKFKFEEPRREQIDELKIELFRHFREDVSLRLWNSDFKRQIDGIELLQKALPSSRKEVIELLDILLRWFVLRFCESNTTCLLKVLDFLPELFDVLKDQSYM 1257

[Close]

BLAST of Cicer_arietinum_v1_Contig1096 vs. TAIR peptide
Match: AT2G35630.1 (| Symbols: MOR1, GEM1 | ARM repeat superfamily protein | chr2:14966828-14980361 FORWARD LENGTH=1978)

HSP 1 Score: 167.162 bits (422), Expect = 2.353e-42
Identity = 80/114 (70.18%), Postives = 95/114 (83.33%), Query Frame = 1

Query:   25 TKDSNKEDRERLVVRRFKFEDPRIEQIQDLENDMLRYFREDLHRRLLSADFKKQVDGLEMLQKALPSIAKEVIEILDILLRWFVLQFCKSNTTCXXXXXXXXXXXXDILKDDGY 366
            TKDSNKEDRER+VVRR KFE+ R EQIQDLENDM+++FREDL +RLLS DFKKQVDGLE+LQKALPS++KE+IE+LD+LLRWFVLQFCKSNTTC            + L+D+ Y
Sbjct: 1135 TKDSNKEDRERVVVRRIKFEELRPEQIQDLENDMMKFFREDLQKRLLSPDFKKQVDGLEILQKALPSVSKEIIEVLDVLLRWFVLQFCKSNTTCLLKVLEFLPELFNTLRDEEY 1248

The following BLAST results are available for this feature:

BLAST of Cicer_arietinum_v1_Contig1096 vs. TrEMBL
BLAST of Cicer_arietinum_v1_Contig1096 vs. TAIR peptide

BLAST of Cicer_arietinum_v1_Contig1096 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
B9T7P5_RICCO	3.009e-45	79.65	Microtubule associated protein xmap215, putative O...	[more]
B9GIF2_POPTR	1.070e-42	74.34	Microtubule organization protein OS=Populus tricho...	[more]
B9I0T7_POPTR	3.114e-42	73.45	Microtubule organization protein OS=Populus tricho...	[more]
Q8S912_TOBAC	7.669e-41	68.42	Microtubule bundling polypeptide TMBP200 OS=Nicoti...	[more]
Q9ZQN6_ARATH	4.971e-40	70.18	Similar to ch-TOG protein from Homo sapiens OS=Ara...	[more]
Q94FN2_ARATH	4.971e-40	70.18	MOR1/GEM1 OS=Arabidopsis thaliana GN=At2g35630 PE=...	[more]
D7TGA8_VITVI	4.971e-40	72.57	Whole genome shotgun sequence of line PN40024, sca...	[more]
D7LII7_ARALY	2.467e-39	70.18	Putative uncharacterized protein OS=Arabidopsis ly...	[more]
Q5N749_ORYSJ	4.507e-33	60.87	Os01g0816400 protein OS=Oryza sativa subsp. japoni...	[more]
B8ABA5_ORYSI	4.507e-33	60.87	Putative uncharacterized protein OS=Oryza sativa s...	[more]

BLAST of Cicer_arietinum_v1_Contig1096 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 1


Match Name	E-value	Identity	Description
AT2G35630.1	2.353e-42	70.18	\| Symbols: MOR1, GEM1 \| ARM repeat superfamily pro...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR12609	MICROTUBULE ASSOCIATED PROTEIN XMAP215	coord: 8..121 score: 4
None	No IPR available	SEG	seg	seg	coord: 101..112 score
None	No IPR available	SEG	seg	seg	coord: 68..87 score

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>Cicer_arietinum_v1_Contig1096 ID=Cicer_arietinum_v1_Contig1096; Name=Cicer_arietinum_v1_Contig1096; organism=Cicer arietinum; type=contig; length=382bp
GATTAGCGTGGTCGCGGCCGAGGTACCAAGGATTCAAATAAGGAAGATAG
AGAGAGATTGGTTGTTCGAAGGTTTAAGTTTGAGGACCCACGAATTGAGC
AAATTCAGGATCTTGAGAATGATATGCTGAGGTATTTCAGAGAGGATTTA
CATAGGAGACTCTTAAGTGCAGATTTTAAGAAGCAAGTTGATGGACTTGA
AATGCTGCAGAAGGCACTTCCATCCATTGCTAAGGAAGTTATAGAAATTT
TGGACATTCTTTTGAGGTGGTTTGTGTTGCAGTTCTGCAAATCAAACACA
ACATGTCTATTAAAGGTGCTAGAATTTCTTCCTGAGTTACTTGACATTTT
GAAGGATGATGGGTACCTGCCCGGGCGGCCGC

Search form

Cicer_arietinum_v1_Contig1096