Cicer_arietinum_v1_Contig1119

Contig Overview


Name	Cicer_arietinum_v1_Contig1119
Unique Name	Cicer_arietinum_v1_Contig1119
Type	contig
Organism	Cicer arietinum (chickpea)
Sequence length	769

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
GR402673	EST	GR402673:41..354 +	Cicer arietinum unigene v1	n/a
GR912493	EST	GR912493:18..472 +	Cicer arietinum unigene v1	n/a
GR917434	EST	GR917434:1..486 +	Cicer arietinum unigene v1	n/a
GR916984	EST	GR916984:18..482 +	Cicer arietinum unigene v1	n/a
GR915287	EST	GR915287:18..498 +	Cicer arietinum unigene v1	n/a
GR913913	EST	GR913913:113..573 +	Cicer arietinum unigene v1	n/a
GR913873	EST	GR913873:113..571 +	Cicer arietinum unigene v1	n/a
GR396465	EST	GR396465:41..738 +	Cicer arietinum unigene v1	n/a
GR403672	EST	GR403672:41..746 +	Cicer arietinum unigene v1	n/a
GR403618	EST	GR403618:153..770 -	Cicer arietinum unigene v1	n/a

Unigenes

This contig is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	contig

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
KEGG analysis for Cicer arietinum unigene v1	2011-01-05
Homology Analysis: Cicer arietinum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide	2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Relationships

The following EST feature(s) are a part of this contig:


Feature Name	Unique Name	Species	Type
GR402673	GR402673	Cicer arietinum	EST
GR912493	GR912493	Cicer arietinum	EST
GR917434	GR917434	Cicer arietinum	EST
GR916984	GR916984	Cicer arietinum	EST
GR915287	GR915287	Cicer arietinum	EST
GR913913	GR913913	Cicer arietinum	EST
GR913873	GR913873	Cicer arietinum	EST
GR396465	GR396465	Cicer arietinum	EST
GR403672	GR403672	Cicer arietinum	EST
GR403618	GR403618	Cicer arietinum	EST

Homology

[Close]

BLAST of Cicer_arietinum_v1_Contig1119 vs. SwissProt
Match: RS12_HORVU (40S ribosomal protein S12 OS=Hordeum vulgare GN=RPS12 PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.287e-50
Identity = 94/119 (78.99%), Postives = 108/119 (90.76%), Query Frame = 2

Query:  188 MDIMTAVQLVLRKSRAYGGLARGLHESAKVIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPNAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKS 544
            MD+MTA+QLV++KS A+ GL +GL E+AK IEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNV L+TVP+AKTLGEWAGLCKID+EGKARKV GCSC+VVKD+GEE E  N+V Q+VKS
Sbjct:   24 MDLMTALQLVMKKSSAHDGLVKGLREAAKSIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVHLVTVPSAKTLGEWAGLCKIDTEGKARKVVGCSCIVVKDYGEESEGLNIVQQYVKS 142

[Close]

BLAST of Cicer_arietinum_v1_Contig1119 vs. SwissProt
Match: RS122_ARATH (40S ribosomal protein S12-2 OS=Arabidopsis thaliana GN=RPS12C PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.090e-49
Identity = 91/120 (75.83%), Postives = 107/120 (89.17%), Query Frame = 2

Query:  188 MDIMTAVQLVLRKSRAYGGLARGLHESAKVIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPNAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKSN 547
            MD+ TA++L +RKSRAYGG+ RGLHESAK+IEK  AQLCVLAEDC+QPDYVKLVKALCA+H++ LLTVP+AKTLGEWAGLCKIDSEG ARKV GCSC+V+KDFGEE  A N+V +H+ SN
Sbjct:   25 MDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALNIVKKHLDSN 144

[Close]

BLAST of Cicer_arietinum_v1_Contig1119 vs. SwissProt
Match: RS121_ARATH (40S ribosomal protein S12-1 OS=Arabidopsis thaliana GN=RPS12A PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.332e-47
Identity = 90/119 (75.63%), Postives = 104/119 (87.39%), Query Frame = 2

Query:  188 MDIMTAVQLVLRKSRAYGGLARGLHESAKVIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPNAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKS 544
            MD+MTA++L LRK+RAYGG+ RGLHE AK+IEK  AQL VLAEDC+QPDYVKLVKALCA+H V LLTVP+AKTLGEWAGLCKIDSEG ARKV GCSC+VVKDFGEE  A ++V +H+ S
Sbjct:   25 MDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVAQLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVVKDFGEETTALSIVNKHIAS 143

[Close]

BLAST of Cicer_arietinum_v1_Contig1119 vs. SwissProt
Match: RS12_CYAPA (40S ribosomal protein S12 OS=Cyanophora paradoxa GN=RPS12 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.169e-35
Identity = 68/118 (57.63%), Postives = 91/118 (77.12%), Query Frame = 2

Query:  188 MDIMTAVQLVLRKSRAYGGLARGLHESAKVIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPNAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVK 541
            MD+MTA++ VL+K+    GL RGLHE AK +++ +AQLCVLA + ++P Y +LV+ALCAEH ++L+ VP  K LGEW GLCKID EGKARKV GCSC V+  FGEE EA  V+++++K
Sbjct:   17 MDVMTALKEVLKKAMVVDGLKRGLHECAKALDQRSAQLCVLAANVNEPAYTRLVEALCAEHGINLIKVPENKQLGEWVGLCKIDKEGKARKVVGCSCAVITKFGEESEARQVLMEYLK 134

[Close]

BLAST of Cicer_arietinum_v1_Contig1119 vs. SwissProt
Match: RS12_PIG (40S ribosomal protein S12 OS=Sus scrofa GN=RPS12 PE=2 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 1.527e-35
Identity = 69/118 (58.47%), Postives = 92/118 (77.97%), Query Frame = 2

Query:  188 MDIMTAVQLVLRKSRAYGGLARGLHESAKVIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPNAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVK 541
            MD+ TA+Q VL+ +  + GLARG+ E+AK ++K  A LCVLA +CD+P YVKLV+ALCAEH ++L+ V + K LGEW GLCKID EGK RKV GCSCVVVKD+G+E +A +V+ ++ K
Sbjct:   12 MDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129

[Close]

BLAST of Cicer_arietinum_v1_Contig1119 vs. SwissProt
Match: RS12_HUMAN (40S ribosomal protein S12 OS=Homo sapiens GN=RPS12 PE=1 SV=3)

HSP 1 Score: 149.828 bits (377), Expect = 1.527e-35
Identity = 69/118 (58.47%), Postives = 92/118 (77.97%), Query Frame = 2

Query:  188 MDIMTAVQLVLRKSRAYGGLARGLHESAKVIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPNAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVK 541
            MD+ TA+Q VL+ +  + GLARG+ E+AK ++K  A LCVLA +CD+P YVKLV+ALCAEH ++L+ V + K LGEW GLCKID EGK RKV GCSCVVVKD+G+E +A +V+ ++ K
Sbjct:   12 MDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129

[Close]

BLAST of Cicer_arietinum_v1_Contig1119 vs. SwissProt
Match: RS12_CHICK (40S ribosomal protein S12 OS=Gallus gallus GN=RPS12 PE=1 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 1.527e-35
Identity = 69/118 (58.47%), Postives = 92/118 (77.97%), Query Frame = 2

Query:  188 MDIMTAVQLVLRKSRAYGGLARGLHESAKVIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPNAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVK 541
            MD+ TA+Q VL+ +  + GLARG+ E+AK ++K  A LCVLA +CD+P YVKLV+ALCAEH ++L+ V + K LGEW GLCKID EGK RKV GCSCVVVKD+G+E +A +V+ ++ K
Sbjct:   12 MDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129

[Close]

BLAST of Cicer_arietinum_v1_Contig1119 vs. SwissProt
Match: RS12_BOVIN (40S ribosomal protein S12 OS=Bos taurus GN=RPS12 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.527e-35
Identity = 69/118 (58.47%), Postives = 92/118 (77.97%), Query Frame = 2

Query:  188 MDIMTAVQLVLRKSRAYGGLARGLHESAKVIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPNAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVK 541
            MD+ TA+Q VL+ +  + GLARG+ E+AK ++K  A LCVLA +CD+P YVKLV+ALCAEH ++L+ V + K LGEW GLCKID EGK RKV GCSCVVVKD+G+E +A +V+ ++ K
Sbjct:   12 MDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129

[Close]

BLAST of Cicer_arietinum_v1_Contig1119 vs. SwissProt
Match: RS12_XENLA (40S ribosomal protein S12 OS=Xenopus laevis GN=rps12 PE=2 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 2.206e-34
Identity = 68/118 (57.63%), Postives = 91/118 (77.12%), Query Frame = 2

Query:  188 MDIMTAVQLVLRKSRAYGGLARGLHESAKVIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPNAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVK 541
            MD+ TA+Q VL+ +  + GLARG+ E+AK ++K  A LCVLA +CD+P YVKLV+ALCAE  ++L+ V + K LGEW GLCKID EGK RKV GCSCVVVKD+G+E +A +V+ ++ K
Sbjct:   12 MDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAEPQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129

[Close]

BLAST of Cicer_arietinum_v1_Contig1119 vs. SwissProt
Match: RS12_RAT (40S ribosomal protein S12 OS=Rattus norvegicus GN=Rps12 PE=1 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 2.206e-34
Identity = 68/118 (57.63%), Postives = 91/118 (77.12%), Query Frame = 2

Query:  188 MDIMTAVQLVLRKSRAYGGLARGLHESAKVIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPNAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVK 541
            MD+ TA+Q VL+ +  + GLARG+ E+AK ++K  A LCVLA +CD+P YVKLV+AL AEH ++L+ V + K LGEW GLCKID EGK RKV GCSCVVVKD+G+E +A +V+ ++ K
Sbjct:   12 MDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALLAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129

[Close]

BLAST of Cicer_arietinum_v1_Contig1119 vs. TrEMBL
Match: C6T064_SOYBN (40S ribosomal protein S12 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.901e-60
Identity = 115/120 (95.83%), Postives = 118/120 (98.33%), Query Frame = 2

Query:  188 MDIMTAVQLVLRKSRAYGGLARGLHESAKVIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPNAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKSN 547
            MDIMTA+QLVLRKS AYGGLARGLHE AKVIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVP+AKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVK+N
Sbjct:   22 MDIMTALQLVLRKSLAYGGLARGLHEGAKVIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKAN 141

[Close]

BLAST of Cicer_arietinum_v1_Contig1119 vs. TrEMBL
Match: C6SVV7_SOYBN (40S ribosomal protein S12 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.901e-60
Identity = 115/120 (95.83%), Postives = 118/120 (98.33%), Query Frame = 2

Query:  188 MDIMTAVQLVLRKSRAYGGLARGLHESAKVIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPNAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKSN 547
            MDIMTA+QLVLRKS AYGGLARGLHE AKVIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVP+AKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVK+N
Sbjct:   22 MDIMTALQLVLRKSLAYGGLARGLHEGAKVIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKAN 141

[Close]

BLAST of Cicer_arietinum_v1_Contig1119 vs. TrEMBL
Match: C6SW79_SOYBN (40S ribosomal protein S12 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 2.745e-59
Identity = 114/119 (95.80%), Postives = 116/119 (97.48%), Query Frame = 2

Query:  188 MDIMTAVQLVLRKSRAYGGLARGLHESAKVIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPNAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKS 544
            MDIMTA+QLVL KS AYGGLARGLHE AKVIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVP+AKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKS
Sbjct:   21 MDIMTALQLVLGKSLAYGGLARGLHEGAKVIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKS 139

[Close]

BLAST of Cicer_arietinum_v1_Contig1119 vs. TrEMBL
Match: B9GT02_POPTR (40S ribosomal protein S12 OS=Populus trichocarpa GN=POPTRDRAFT_551211 PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 3.472e-54
Identity = 103/120 (85.83%), Postives = 114/120 (95.00%), Query Frame = 2

Query:  188 MDIMTAVQLVLRKSRAYGGLARGLHESAKVIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPNAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKSN 547
            MD+MTA+QLVLRKS A+GGL+RGLHE AKVIEKHAAQLCVLAEDC+QPDYVKLVKALCA+HNV+LLTVP+AKTLGEWAGLCKIDSEGKARKV GCSCVVVKDFGE+ EA NV+ QHVK+N
Sbjct:   26 MDLMTALQLVLRKSLAHGGLSRGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVNLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDTEALNVIQQHVKAN 145

[Close]

BLAST of Cicer_arietinum_v1_Contig1119 vs. TrEMBL
Match: A9P9K3_POPTR (40S ribosomal protein S12 OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 3.472e-54
Identity = 103/120 (85.83%), Postives = 114/120 (95.00%), Query Frame = 2

Query:  188 MDIMTAVQLVLRKSRAYGGLARGLHESAKVIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPNAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKSN 547
            MD+MTA+QLVLRKS A+GGL+RGLHE AKVIEKHAAQLCVLAEDC+QPDYVKLVKALCA+HNV+LLTVP+AKTLGEWAGLCKIDSEGKARKV GCSCVVVKDFGE+ EA NV+ QHVK+N
Sbjct:   25 MDLMTALQLVLRKSLAHGGLSRGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVNLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDTEALNVIQQHVKAN 144

[Close]

BLAST of Cicer_arietinum_v1_Contig1119 vs. TrEMBL
Match: D7U865_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_70.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00034219001 PE=4 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 2.251e-53
Identity = 104/120 (86.67%), Postives = 112/120 (93.33%), Query Frame = 2

Query:  188 MDIMTAVQLVLRKSRAYGGLARGLHESAKVIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPNAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKSN 547
            MD+MTA+QLVLRKS A+GGLARGLHE AKVIEKHAA LCVLAEDC+QPDYVKLVKALCA+HNVSL+TVP+AKTLGEWAGLCKIDSEGKARKV GCSCVVVKDFGEE EA NVV Q VKS+
Sbjct:  109 MDLMTALQLVLRKSLAHGGLARGLHEGAKVIEKHAAHLCVLAEDCNQPDYVKLVKALCADHNVSLITVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEETEAMNVVQQQVKSH 228

[Close]

BLAST of Cicer_arietinum_v1_Contig1119 vs. TrEMBL
Match: A9PJY6_9ROSI (40S ribosomal protein S12 OS=Populus trichocarpa x Populus deltoides PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 2.489e-52
Identity = 99/120 (82.50%), Postives = 112/120 (93.33%), Query Frame = 2

Query:  188 MDIMTAVQLVLRKSRAYGGLARGLHESAKVIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPNAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKSN 547
            MD+MTA+QLVLRKS A+GGL+RGLHE AK+IEKH AQLCVLAEDC+QPDYVKLVKALCA+H V+LL+VP+AKTLGEWAGLCKIDSEGKARKV GCSCVVVKDFGE+ EA NVV QH+K+N
Sbjct:   29 MDLMTALQLVLRKSLAHGGLSRGLHEGAKMIEKHTAQLCVLAEDCNQPDYVKLVKALCADHKVNLLSVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDSEALNVVQQHIKAN 148

[Close]

BLAST of Cicer_arietinum_v1_Contig1119 vs. TrEMBL
Match: A9PDC2_POPTR (40S ribosomal protein S12 OS=Populus trichocarpa GN=POPTRDRAFT_714910 PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 2.489e-52
Identity = 99/120 (82.50%), Postives = 112/120 (93.33%), Query Frame = 2

Query:  188 MDIMTAVQLVLRKSRAYGGLARGLHESAKVIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPNAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKSN 547
            MD+MTA+QLVLRKS A+GGL+RGLHE AK+IEKH AQLCVLAEDC+QPDYVKLVKALCA+H V+LL+VP+AKTLGEWAGLCKIDSEGKARKV GCSCVVVKDFGE+ EA NVV QH+K+N
Sbjct:   27 MDLMTALQLVLRKSLAHGGLSRGLHEGAKMIEKHTAQLCVLAEDCNQPDYVKLVKALCADHKVNLLSVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDSEALNVVQQHIKAN 146

[Close]

BLAST of Cicer_arietinum_v1_Contig1119 vs. TrEMBL
Match: B9PB63_POPTR (40S ribosomal protein S12 (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_948722 PE=3 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 4.245e-52
Identity = 100/120 (83.33%), Postives = 110/120 (91.67%), Query Frame = 2

Query:  188 MDIMTAVQLVLRKSRAYGGLARGLHESAKVIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPNAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKSN 547
            MD+MTA+QLVL+KS A+GGLARGLHE AKVIEKHAAQLCVLAEDC+QPDYVKLVKALCA+H V LL VP+AKTLGEWAGLCKIDSEGKARKV GCSCVVVKD+GE  E YNVV +HVKS+
Sbjct:   12 MDLMTALQLVLKKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHGVGLLMVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDYGETSEGYNVVQEHVKSH 131

[Close]

BLAST of Cicer_arietinum_v1_Contig1119 vs. TrEMBL
Match: B9GVJ7_POPTR (40S ribosomal protein S12 (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_853195 PE=3 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 4.245e-52
Identity = 100/120 (83.33%), Postives = 110/120 (91.67%), Query Frame = 2

Query:  188 MDIMTAVQLVLRKSRAYGGLARGLHESAKVIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPNAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKSN 547
            MD+MTA+QLVL+KS A+GGLARGLHE AKVIEKHAAQLCVLAEDC+QPDYVKLVKALCA+H V LL VP+AKTLGEWAGLCKIDSEGKARKV GCSCVVVKD+GE  E YNVV +HVKS+
Sbjct:   14 MDLMTALQLVLKKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHGVGLLMVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDYGETSEGYNVVQEHVKSH 133

[Close]

BLAST of Cicer_arietinum_v1_Contig1119 vs. TAIR peptide
Match: AT2G32060.2 (| Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | chr2:13639228-13640104 REVERSE LENGTH=144)

HSP 1 Score: 196.823 bits (499), Expect = 1.089e-50
Identity = 91/120 (75.83%), Postives = 107/120 (89.17%), Query Frame = 2

Query:  188 MDIMTAVQLVLRKSRAYGGLARGLHESAKVIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPNAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKSN 547
            MD+ TA++L +RKSRAYGG+ RGLHESAK+IEK  AQLCVLAEDC+QPDYVKLVKALCA+H++ LLTVP+AKTLGEWAGLCKIDSEG ARKV GCSC+V+KDFGEE  A N+V +H+ SN
Sbjct:   25 MDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALNIVKKHLDSN 144

[Close]

BLAST of Cicer_arietinum_v1_Contig1119 vs. TAIR peptide
Match: AT2G32060.3 (| Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | chr2:13639228-13640104 REVERSE LENGTH=144)

HSP 1 Score: 196.823 bits (499), Expect = 1.089e-50
Identity = 91/120 (75.83%), Postives = 107/120 (89.17%), Query Frame = 2

Query:  188 MDIMTAVQLVLRKSRAYGGLARGLHESAKVIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPNAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKSN 547
            MD+ TA++L +RKSRAYGG+ RGLHESAK+IEK  AQLCVLAEDC+QPDYVKLVKALCA+H++ LLTVP+AKTLGEWAGLCKIDSEG ARKV GCSC+V+KDFGEE  A N+V +H+ SN
Sbjct:   25 MDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALNIVKKHLDSN 144

[Close]

BLAST of Cicer_arietinum_v1_Contig1119 vs. TAIR peptide
Match: AT2G32060.1 (| Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | chr2:13639228-13640104 REVERSE LENGTH=144)

HSP 1 Score: 196.823 bits (499), Expect = 1.089e-50
Identity = 91/120 (75.83%), Postives = 107/120 (89.17%), Query Frame = 2

Query:  188 MDIMTAVQLVLRKSRAYGGLARGLHESAKVIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPNAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKSN 547
            MD+ TA++L +RKSRAYGG+ RGLHESAK+IEK  AQLCVLAEDC+QPDYVKLVKALCA+H++ LLTVP+AKTLGEWAGLCKIDSEG ARKV GCSC+V+KDFGEE  A N+V +H+ SN
Sbjct:   25 MDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALNIVKKHLDSN 144

[Close]

BLAST of Cicer_arietinum_v1_Contig1119 vs. TAIR peptide
Match: AT1G15930.1 (| Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | chr1:5471702-5472741 FORWARD LENGTH=144)

HSP 1 Score: 189.889 bits (481), Expect = 1.331e-48
Identity = 90/119 (75.63%), Postives = 104/119 (87.39%), Query Frame = 2

Query:  188 MDIMTAVQLVLRKSRAYGGLARGLHESAKVIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPNAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKS 544
            MD+MTA++L LRK+RAYGG+ RGLHE AK+IEK  AQL VLAEDC+QPDYVKLVKALCA+H V LLTVP+AKTLGEWAGLCKIDSEG ARKV GCSC+VVKDFGEE  A ++V +H+ S
Sbjct:   25 MDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVAQLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVVKDFGEETTALSIVNKHIAS 143

[Close]

BLAST of Cicer_arietinum_v1_Contig1119 vs. TAIR peptide
Match: AT1G15930.2 (| Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | chr1:5471702-5472741 FORWARD LENGTH=144)

HSP 1 Score: 189.889 bits (481), Expect = 1.331e-48
Identity = 90/119 (75.63%), Postives = 104/119 (87.39%), Query Frame = 2

Query:  188 MDIMTAVQLVLRKSRAYGGLARGLHESAKVIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPNAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKS 544
            MD+MTA++L LRK+RAYGG+ RGLHE AK+IEK  AQL VLAEDC+QPDYVKLVKALCA+H V LLTVP+AKTLGEWAGLCKIDSEG ARKV GCSC+VVKDFGEE  A ++V +H+ S
Sbjct:   25 MDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVAQLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVVKDFGEETTALSIVNKHIAS 143

The following BLAST results are available for this feature:

BLAST of Cicer_arietinum_v1_Contig1119 vs. SwissProt
BLAST of Cicer_arietinum_v1_Contig1119 vs. TrEMBL
BLAST of Cicer_arietinum_v1_Contig1119 vs. TAIR peptide

BLAST of Cicer_arietinum_v1_Contig1119 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 10


Match Name	E-value	Identity	Description
RS12_HORVU	1.287e-50	78.99	40S ribosomal protein S12 OS=Hordeum vulgare GN=RP...	[more]
RS122_ARATH	1.090e-49	75.83	40S ribosomal protein S12-2 OS=Arabidopsis thalian...	[more]
RS121_ARATH	1.332e-47	75.63	40S ribosomal protein S12-1 OS=Arabidopsis thalian...	[more]
RS12_CYAPA	1.169e-35	57.63	40S ribosomal protein S12 OS=Cyanophora paradoxa G...	[more]
RS12_PIG	1.527e-35	58.47	40S ribosomal protein S12 OS=Sus scrofa GN=RPS12 P...	[more]
RS12_HUMAN	1.527e-35	58.47	40S ribosomal protein S12 OS=Homo sapiens GN=RPS12...	[more]
RS12_CHICK	1.527e-35	58.47	40S ribosomal protein S12 OS=Gallus gallus GN=RPS1...	[more]
RS12_BOVIN	1.527e-35	58.47	40S ribosomal protein S12 OS=Bos taurus GN=RPS12 P...	[more]
RS12_XENLA	2.206e-34	57.63	40S ribosomal protein S12 OS=Xenopus laevis GN=rps...	[more]
RS12_RAT	2.206e-34	57.63	40S ribosomal protein S12 OS=Rattus norvegicus GN=...	[more]

BLAST of Cicer_arietinum_v1_Contig1119 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
C6T064_SOYBN	1.901e-60	95.83	40S ribosomal protein S12 OS=Glycine max PE=2 SV=1	[more]
C6SVV7_SOYBN	1.901e-60	95.83	40S ribosomal protein S12 OS=Glycine max PE=2 SV=1	[more]
C6SW79_SOYBN	2.745e-59	95.80	40S ribosomal protein S12 OS=Glycine max PE=2 SV=1	[more]
B9GT02_POPTR	3.472e-54	85.83	40S ribosomal protein S12 OS=Populus trichocarpa G...	[more]
A9P9K3_POPTR	3.472e-54	85.83	40S ribosomal protein S12 OS=Populus trichocarpa P...	[more]
D7U865_VITVI	2.251e-53	86.67	Whole genome shotgun sequence of line PN40024, sca...	[more]
A9PJY6_9ROSI	2.489e-52	82.50	40S ribosomal protein S12 OS=Populus trichocarpa x...	[more]
A9PDC2_POPTR	2.489e-52	82.50	40S ribosomal protein S12 OS=Populus trichocarpa G...	[more]
B9PB63_POPTR	4.245e-52	83.33	40S ribosomal protein S12 (Fragment) OS=Populus tr...	[more]
B9GVJ7_POPTR	4.245e-52	83.33	40S ribosomal protein S12 (Fragment) OS=Populus tr...	[more]

BLAST of Cicer_arietinum_v1_Contig1119 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 5


Match Name	E-value	Identity	Description
AT2G32060.2	1.089e-50	75.83	\| Symbols: \| Ribosomal protein L7Ae/L30e/S12e/Gad...	[more]
AT2G32060.3	1.089e-50	75.83	\| Symbols: \| Ribosomal protein L7Ae/L30e/S12e/Gad...	[more]
AT2G32060.1	1.089e-50	75.83	\| Symbols: \| Ribosomal protein L7Ae/L30e/S12e/Gad...	[more]
AT1G15930.1	1.331e-48	75.63	\| Symbols: \| Ribosomal protein L7Ae/L30e/S12e/Gad...	[more]
AT1G15930.2	1.331e-48	75.63	\| Symbols: \| Ribosomal protein L7Ae/L30e/S12e/Gad...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000530	Ribosomal protein S12e	PRINTS	PR00972	RIBSOMALS12E	coord: 39..52 score: 5.8e-24coord: 53..69 score: 5.8e-24coord: 94..115 score: 5.8e-24coord: 119..132 score: 5.8
IPR000530	Ribosomal protein S12e	PANTHER	PTHR11843	40S RIBOSOMAL PROTEIN S12	coord: 3..149 score: 2.1
IPR004038	Ribosomal protein L7Ae/L30e/S12e/Gadd45	PFAM	PF01248	Ribosomal_L7Ae	coord: 35..128 score: 1.2
None	No IPR available	GENE3D	3.30.1330.30	no description	coord: 28..148 score: 9.4
None	No IPR available	SEG	seg	seg	coord: 8..29 score
None	No IPR available	SUPERFAMILY	55315	L30e-like	coord: 29..149 score: 3.1
None	No IPR available	SEG	seg	seg	coord: 40..62 score

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>Cicer_arietinum_v1_Contig1119 ID=Cicer_arietinum_v1_Contig1119; Name=Cicer_arietinum_v1_Contig1119; organism=Cicer arietinum; type=contig; length=769bp
GATTTCGAGCGGCCGCCCGGGCAGGTATCATACCTAGGGATTTTTCGGCG
GCACCATCTTCTTCAACAAGGAACACAAAAAGTAGAGTCTTTTTTATTGA
AATCCACAATCAAATATGTCTGGTGAAGAAGGTGTTGTTGCAGTCGAACC
AGTTGTTGCTGCTGCGGCTGCTATTCCTGGTGAGCCAATGGATATCATGA
CTGCTGTTCAGCTTGTGCTGAGAAAGTCCCGGGCTTATGGTGGCCTTGCA
CGAGGTCTTCATGAAAGCGCAAAGGTGATTGAGAAGCACGCTGCTCAACT
CTGTGTTCTAGCTGAAGACTGTGACCAACCTGATTATGTCAAGTTGGTGA
AAGCCCTTTGCGCAGAGCACAATGTTAGCTTATTGACTGTTCCAAATGCA
AAGACCCTTGGAGAGTGGGCTGGTTTGTGTAAGATTGATTCAGAGGGTAA
AGCTAGGAAGGTAACTGGCTGCTCCTGCGTGGTTGTCAAGGATTTTGGTG
AAGAGCACGAAGCATACAATGTTGTTTTGCAGCACGTGAAATCTAACTGA
GTTGCAATATGCATCAGTTTGAAGTTTTTGTAAAAGTACTGTGATTTTTT
CTTTTATGGAGTTTCACCCTAGGGATTTTGATGGTTTAATACTGTACCCA
TTCTCATTCTCCTTCTCGTTGTTACTCAAATTTGTTTAGATTGATAACAT
GTTTGTTACCCATTTTCTATTTTATACTTATGACATTTGAAATTTACTAT
GGCTTGATGCCAATTTTCG

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular anatomical structure
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **INTERPRO**
Term	Definition
IPR000530	Ribosomal_eS12
IPR004038	Ribosomal_eL8/eL30/eS12/Gad45

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Cicer_arietinum_v1_Contig1119