Cicer_arietinum_v1_Contig1155

Contig Overview


Name	Cicer_arietinum_v1_Contig1155
Unique Name	Cicer_arietinum_v1_Contig1155
Type	contig
Organism	Cicer arietinum (chickpea)
Sequence length	470

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
GR917263	EST	GR917263:1..469 +
GR917945	EST	GR917945:13..469 +
HO067620	EST	HO067620:35..436 +
GR913558	EST	GR913558:15..470 +

Unigenes

This contig is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	contig

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide	2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Relationships

The following EST feature(s) are a part of this contig:


Feature Name	Unique Name	Species	Type
GR917263	GR917263	Cicer arietinum	EST
GR917945	GR917945	Cicer arietinum	EST
HO067620	HO067620	Cicer arietinum	EST
GR913558	GR913558	Cicer arietinum	EST

Homology

[Close]

BLAST of Cicer_arietinum_v1_Contig1155 vs. SwissProt
Match: Y1089_ARATH (Uncharacterized protein At1g10890 OS=Arabidopsis thaliana GN=At1g10890 PE=1 SV=1)

HSP 1 Score: 53.1434 bits (126), Expect = 6.989e-7
Identity = 30/76 (39.47%), Postives = 44/76 (57.89%), Query Frame = 3

Query:  159 IRKNVEEKLNSEEVKLEIERRVAEGVKNLFDDVEVQLEKEKQDALNXXXXXXXXXXXXXXXLDKMLEENRRRVEES 386
            IRK VEE L SE++K+EI   + EG K L ++V  QLE+EK+ +L                 +++ EEN +RVEE+
Sbjct:  141 IRKKVEESLQSEKIKMEILTLLEEGRKRLNEEVAAQLEEEKEASLIEAKEKEEREQQEKEERERIAEENLKRVEEA 216

[Close]

BLAST of Cicer_arietinum_v1_Contig1155 vs. TrEMBL
Match: C6TLL8_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.222e-22
Identity = 67/116 (57.76%), Postives = 71/116 (61.21%), Query Frame = 3

Query:   39 TPILKHKKDHQITLNKTSKRQHXXXXXXXXXXXXXXXXXXIRKNVEEKLNSEEVKLEIERRVAEGVKNLFDDVEVQLEKEKQDALNXXXXXXXXXXXXXXXLDKMLEENRRRVEES 386
            +P  K KKD     NK SKRQH                  IRKNVEEKLN+EEVKLEIE+RVAEGVK LFDDVE QLEKEK+DAL                LDKMLEENRRRVEES
Sbjct:   44 SPTPKPKKDQ----NK-SKRQHEEELKLLEEETARRLEEAIRKNVEEKLNTEEVKLEIEKRVAEGVKKLFDDVEAQLEKEKEDALTEARRKEEQARKEREELDKMLEENRRRVEES 154

[Close]

BLAST of Cicer_arietinum_v1_Contig1155 vs. TrEMBL
Match: B9GH98_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_752957 PE=4 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.018e-17
Identity = 50/76 (65.79%), Postives = 54/76 (71.05%), Query Frame = 3

Query:  159 IRKNVEEKLNSEEVKLEIERRVAEGVKNLFDDVEVQLEKEKQDALNXXXXXXXXXXXXXXXLDKMLEENRRRVEES 386
            IRKNVEEKLNSEEV+LEIERR+ EG K LFDDVE QL KEK+ AL                LDKMLEENRRRVEE+
Sbjct:  110 IRKNVEEKLNSEEVQLEIERRIEEGRKKLFDDVEAQLHKEKEAALAEERRKEEQARKEREELDKMLEENRRRVEEA 185

[Close]

BLAST of Cicer_arietinum_v1_Contig1155 vs. TrEMBL
Match: C5XY36_SORBI (Putative uncharacterized protein Sb04g007690 OS=Sorghum bicolor GN=Sb04g007690 PE=4 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.232e-16
Identity = 44/76 (57.89%), Postives = 57/76 (75.00%), Query Frame = 3

Query:  159 IRKNVEEKLNSEEVKLEIERRVAEGVKNLFDDVEVQLEKEKQDALNXXXXXXXXXXXXXXXLDKMLEENRRRVEES 386
            IRKNVEE+LNSEEVKL+IERR+ EG++ LFD+V+ QL+KEK+ AL+               LD+MLEENRR+VEE+
Sbjct:  131 IRKNVEERLNSEEVKLDIERRIEEGIRKLFDEVDSQLQKEKEAALHEARKKAEQERREREELDRMLEENRRKVEEA 206

[Close]

BLAST of Cicer_arietinum_v1_Contig1155 vs. TrEMBL
Match: Q8S5D8_ORYSA (Putative uncharacterized protein OSJNBb0047B19.26 OS=Oryza sativa GN=OSJNBb0047B19.26 PE=4 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.446e-15
Identity = 46/103 (44.66%), Postives = 61/103 (59.22%), Query Frame = 3

Query:   78 LNKTSKRQHXXXXXXXXXXXXXXXXXXIRKNVEEKLNSEEVKLEIERRVAEGVKNLFDDVEVQLEKEKQDALNXXXXXXXXXXXXXXXLDKMLEENRRRVEES 386
            LN  ++RQ                   IRKNVE++LNSE++K EI+RRV EG+K LFD+V+ QL+KEK+ AL                LD+MLEENRR+VEE+
Sbjct:  175 LNLVNRRQKEAELKLLEEELARRVEESIRKNVEDRLNSEDIKNEIKRRVEEGIKQLFDEVDAQLQKEKETALREARHKAEQERREREELDRMLEENRRKVEEA 277

[Close]

BLAST of Cicer_arietinum_v1_Contig1155 vs. TrEMBL
Match: Q33A42_ORYSJ (Expressed protein OS=Oryza sativa subsp. japonica GN=LOC_Os10g15390 PE=4 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 2.467e-15
Identity = 42/76 (55.26%), Postives = 55/76 (72.37%), Query Frame = 3

Query:  159 IRKNVEEKLNSEEVKLEIERRVAEGVKNLFDDVEVQLEKEKQDALNXXXXXXXXXXXXXXXLDKMLEENRRRVEES 386
            IRKNVE++LNSE++K EI+RRV EG+K LFD+V+ QL+KEK+ AL                LD+MLEENRR+VEE+
Sbjct:  129 IRKNVEDRLNSEDIKNEIKRRVEEGIKQLFDEVDAQLQKEKETALREARHKAEQERREREELDRMLEENRRKVEEA 204

[Close]

BLAST of Cicer_arietinum_v1_Contig1155 vs. TrEMBL
Match: B9G7Z3_ORYSJ (Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_31035 PE=4 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.467e-15
Identity = 42/76 (55.26%), Postives = 55/76 (72.37%), Query Frame = 3

Query:  159 IRKNVEEKLNSEEVKLEIERRVAEGVKNLFDDVEVQLEKEKQDALNXXXXXXXXXXXXXXXLDKMLEENRRRVEES 386
            IRKNVE++LNSE++K EI+RRV EG+K LFD+V+ QL+KEK+ AL                LD+MLEENRR+VEE+
Sbjct:  131 IRKNVEDRLNSEDIKNEIKRRVEEGIKQLFDEVDAQLQKEKETALREARHKAEQERREREELDRMLEENRRKVEEA 206

[Close]

BLAST of Cicer_arietinum_v1_Contig1155 vs. TrEMBL
Match: D7SZY7_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_34.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00022926001 PE=4 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 9.376e-15
Identity = 45/76 (59.21%), Postives = 52/76 (68.42%), Query Frame = 3

Query:  159 IRKNVEEKLNSEEVKLEIERRVAEGVKNLFDDVEVQLEKEKQDALNXXXXXXXXXXXXXXXLDKMLEENRRRVEES 386
            IRK VEE LNSEE+KLEI+RR+ EG K L D+V +QLEKEK+ AL                L+KMLEENRRRVEES
Sbjct:  139 IRKKVEESLNSEEIKLEIQRRLEEGRKRLLDEVAIQLEKEKEAALIEARQKEEQARREKEELEKMLEENRRRVEES 214

[Close]

BLAST of Cicer_arietinum_v1_Contig1155 vs. TrEMBL
Match: B9N2J3_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_579985 PE=4 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 9.376e-15
Identity = 47/76 (61.84%), Postives = 51/76 (67.11%), Query Frame = 3

Query:  159 IRKNVEEKLNSEEVKLEIERRVAEGVKNLFDDVEVQLEKEKQDALNXXXXXXXXXXXXXXXLDKMLEENRRRVEES 386
            IRKNVEEKLNSEEV+ EIERR+ EG K LFDDV  QL KEK+ AL                LDKML+EN RRVEES
Sbjct:  143 IRKNVEEKLNSEEVQSEIERRIEEGQKKLFDDVVAQLLKEKEAALVEERRKEAQARKEREELDKMLKENSRRVEES 218

[Close]

BLAST of Cicer_arietinum_v1_Contig1155 vs. TrEMBL
Match: Q9LYU2_ARATH (Putative uncharacterized protein T31B5_160 OS=Arabidopsis thaliana GN=T31B5_160 PE=4 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.037e-13
Identity = 42/76 (55.26%), Postives = 51/76 (67.11%), Query Frame = 3

Query:  159 IRKNVEEKLNSEEVKLEIERRVAEGVKNLFDDVEVQLEKEKQDALNXXXXXXXXXXXXXXXLDKMLEENRRRVEES 386
            +RKNVEE++ +EEVK EIERR  E  + +F DVE+QL+KEK+ ALN               LDKMLEEN RRVEES
Sbjct:  104 VRKNVEERMKTEEVKEEIERRTKEAYEKMFLDVEIQLKKEKEAALNEARRKEEQARREREELDKMLEENSRRVEES 179

[Close]

BLAST of Cicer_arietinum_v1_Contig1155 vs. TrEMBL
Match: D7M594_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_488152 PE=4 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.037e-13
Identity = 42/76 (55.26%), Postives = 51/76 (67.11%), Query Frame = 3

Query:  159 IRKNVEEKLNSEEVKLEIERRVAEGVKNLFDDVEVQLEKEKQDALNXXXXXXXXXXXXXXXLDKMLEENRRRVEES 386
            +RKNVEE++ +EEVK EIERR  E  + +F DVE+QL+KEK+ ALN               LDKMLEEN RRVEES
Sbjct:  104 VRKNVEERMKTEEVKEEIERRTKEAYEKMFLDVEIQLKKEKEAALNEARRKEEQARREREELDKMLEENSRRVEES 179

[Close]

BLAST of Cicer_arietinum_v1_Contig1155 vs. TAIR peptide
Match: AT5G13340.1 (| Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10890.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:4277939-4279397 REVERSE LENGTH=242)

HSP 1 Score: 79.7221 bits (195), Expect = 8.007e-16
Identity = 42/76 (55.26%), Postives = 51/76 (67.11%), Query Frame = 3

Query:  159 IRKNVEEKLNSEEVKLEIERRVAEGVKNLFDDVEVQLEKEKQDALNXXXXXXXXXXXXXXXLDKMLEENRRRVEES 386
            +RKNVEE++ +EEVK EIERR  E  + +F DVE+QL+KEK+ ALN               LDKMLEEN RRVEES
Sbjct:  104 VRKNVEERMKTEEVKEEIERRTKEAYEKMFLDVEIQLKKEKEAALNEARRKEEQARREREELDKMLEENSRRVEES 179

The following BLAST results are available for this feature:

BLAST of Cicer_arietinum_v1_Contig1155 vs. SwissProt
BLAST of Cicer_arietinum_v1_Contig1155 vs. TrEMBL
BLAST of Cicer_arietinum_v1_Contig1155 vs. TAIR peptide

BLAST of Cicer_arietinum_v1_Contig1155 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 1


Match Name	E-value	Identity	Description
Y1089_ARATH	6.989e-7	39.47	Uncharacterized protein At1g10890 OS=Arabidopsis t...	[more]

BLAST of Cicer_arietinum_v1_Contig1155 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
C6TLL8_SOYBN	1.222e-22	57.76	Putative uncharacterized protein OS=Glycine max PE...	[more]
B9GH98_POPTR	2.018e-17	65.79	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
C5XY36_SORBI	2.232e-16	57.89	Putative uncharacterized protein Sb04g007690 OS=So...	[more]
Q8S5D8_ORYSA	1.446e-15	44.66	Putative uncharacterized protein OSJNBb0047B19.26 ...	[more]
Q33A42_ORYSJ	2.467e-15	55.26	Expressed protein OS=Oryza sativa subsp. japonica ...	[more]
B9G7Z3_ORYSJ	2.467e-15	55.26	Putative uncharacterized protein OS=Oryza sativa s...	[more]
D7SZY7_VITVI	9.376e-15	59.21	Whole genome shotgun sequence of line PN40024, sca...	[more]
B9N2J3_POPTR	9.376e-15	61.84	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
Q9LYU2_ARATH	1.037e-13	55.26	Putative uncharacterized protein T31B5_160 OS=Arab...	[more]
D7M594_ARALY	1.037e-13	55.26	Putative uncharacterized protein OS=Arabidopsis ly...	[more]

BLAST of Cicer_arietinum_v1_Contig1155 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 1


Match Name	E-value	Identity	Description
AT5G13340.1	8.007e-16	55.26	\| Symbols: \| unknown protein; FUNCTIONS IN: molec...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 4..35 score
None	No IPR available	SEG	seg	seg	coord: 4..11 score: NAcoord: 35..52 score: NAcoord: 99..113 score: NAcoord: 129..153 score
None	No IPR available	SEG	seg	seg	coord: 44..55 score
None	No IPR available	SEG	seg	seg	coord: 16..53 score
None	No IPR available	SEG	seg	seg	coord: 21..52 score

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>Cicer_arietinum_v1_Contig1155 ID=Cicer_arietinum_v1_Contig1155; Name=Cicer_arietinum_v1_Contig1155; organism=Cicer arietinum; type=contig; length=470bp
CCGCGGGAATTCGATTTCGAGCGGCCGCCCGGGCAGGTACTCCCATTCTC
AAACACAAAAAAGACCATCAAATCACTCTTAACAAAACCAGCAAGCGTCA
ACACGAGGAAGAATTAAAACTGCTGGAAGAAGAGACTGCGAGAAGACTGG
AAGAAGCTATCAGGAAGAATGTTGAGGAGAAGCTTAATTCAGAGGAAGTC
AAATTAGAAATAGAAAGGCGTGTAGCAGAGGGCGTAAAGAATTTATTTGA
TGATGTTGAAGTTCAACTTGAAAAAGAAAAGCAAGATGCTCTTAATGAAG
CTAGGAGGAAAGAAGAACAAGCTCGAAAAGAGAGAGAAGAGTTGGATAAG
ATGCTTGAAGAGAATAGGAGGAGAGTGGAAGAGTCTCAGAGAAGAGAAGC
CCTAGAGCTGCAACGGAAGGAGGAGGAACGGCAAAGGGAATTAGAGATGA
TTCGGCGACAGAAAGAAGAG

Search form

Cicer_arietinum_v1_Contig1155