Cicer_arietinum_v1_Contig1229

Contig Overview


Name	Cicer_arietinum_v1_Contig1229
Unique Name	Cicer_arietinum_v1_Contig1229
Type	contig
Organism	Cicer arietinum (chickpea)
Sequence length	427

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
GR917320	EST	GR917320:1..290 +
GR398463	EST	GR398463:151..256 +
CD766044	EST	CD766044:49..350 +
GR396867	EST	GR396867:178..427 -

Unigenes

This contig is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	contig

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide	2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Relationships

The following EST feature(s) are a part of this contig:


Feature Name	Unique Name	Species	Type
GR917320	GR917320	Cicer arietinum	EST
GR398463	GR398463	Cicer arietinum	EST
CD766044	CD766044	Cicer arietinum	EST
GR396867	GR396867	Cicer arietinum	EST

Homology

[Close]

BLAST of Cicer_arietinum_v1_Contig1229 vs. SwissProt
Match: RS8_PRUAR (40S ribosomal protein S8 OS=Prunus armeniaca GN=RPS8 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 5.105e-34
Identity = 72/104 (69.23%), Postives = 77/104 (74.04%), Query Frame = 2

Query:   26 YLQHYGVEIGRXXXXXXXXXDSXXXXXXXXXXXKKSNHVQRKLENRQKDRQLDSHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFYTKKLQRKKGKGA 337
            YLQHYGVEIGR         D+           KKSNHV  KLE RQ+ R LD+HIEEQFGGG+LLACISSRPGQCG+ADG ILEGKELEFY KKLQRKKGKGA
Sbjct:  114 YLQHYGVEIGRKKKTAAAKKDTPEEGEATTEEAKKSNHVAIKLEKRQQGRTLDAHIEEQFGGGKLLACISSRPGQCGKADGDILEGKELEFYMKKLQRKKGKGA 217

[Close]

BLAST of Cicer_arietinum_v1_Contig1229 vs. SwissProt
Match: RS8_ORYSJ (40S ribosomal protein S8 OS=Oryza sativa subsp. japonica GN=RPS8 PE=2 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 1.137e-33
Identity = 73/106 (68.87%), Postives = 78/106 (73.58%), Query Frame = 2

Query:   26 YLQHYGVEIGRXXXXXXXXXDSXXXXXXXXXXX-KKSNHVQRKLENRQKDRQLDSHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFYTKKLQRKKGKGAA 340
            YL HYGV+IGR         D+            KKSNHV RKLE RQ+ R LD+HIEEQFG GRLLACISSRPGQCGRADGYILEGKELEFY KKLQRKKGKGA+
Sbjct:  114 YLTHYGVDIGRKKKAPAAKKDAEGQDAEATTEEAKKSNHVVRKLEKRQQGRTLDAHIEEQFGSGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAS 219

[Close]

BLAST of Cicer_arietinum_v1_Contig1229 vs. SwissProt
Match: RS82_ARATH (40S ribosomal protein S8-2 OS=Arabidopsis thaliana GN=RPS8B PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.145e-32
Identity = 70/104 (67.31%), Postives = 76/104 (73.08%), Query Frame = 2

Query:   26 YLQHYGVEIGRXXXXXXXXXDSXXXXXXXXXXXKKSNHVQRKLENRQKDRQLDSHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFYTKKLQRKKGKGA 337
            YLQHYGV+IGR         +            KKSNHVQRKLE RQ+ R LDSH+EEQF  GRLLACI+SRPGQCGRADGYILEGKELEFY KKLQ+KKGK A
Sbjct:  114 YLQHYGVDIGRKKKGEAVTTEEV----------KKSNHVQRKLEMRQEGRALDSHLEEQFSSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQKKKGKNA 207

[Close]

BLAST of Cicer_arietinum_v1_Contig1229 vs. SwissProt
Match: RS8_MAIZE (40S ribosomal protein S8 OS=Zea mays GN=RPS8 PE=2 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 3.659e-32
Identity = 71/106 (66.98%), Postives = 75/106 (70.75%), Query Frame = 2

Query:   26 YLQHYGVEIGRXXXXXXXXXDSXXXXXXXXXXX--KKSNHVQRKLENRQKDRQLDSHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFYTKKLQRKKGKGA 337
            YL HYGV+IGR         D+             KKSNHV RKLE R++ R LD HIEEQFG GRLLACISSRPGQCGRADGYILEGKELEFY KKLQRKKGK A
Sbjct:  114 YLTHYGVDIGRKKKTPAAKKDNAEGQEVEAAAEETKKSNHVTRKLEKRKEGRTLDPHIEEQFGSGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKSA 219

[Close]

BLAST of Cicer_arietinum_v1_Contig1229 vs. SwissProt
Match: RS81_ARATH (40S ribosomal protein S8-1 OS=Arabidopsis thaliana GN=RPS8A PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 5.283e-31
Identity = 67/109 (61.47%), Postives = 76/109 (69.72%), Query Frame = 2

Query:   26 YLQHYGVEIGRXXXXXXXXX----DSXXXXXXXXXXXKKSNHVQRKLENRQKDRQLDSHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFYTKKLQRKKGKGAA 340
            YL HYGVE+GR             +            KKSNH+ RK+ +RQ+ R LDSHIE+QF  GRLLACISSRPGQCGRADGYILEGKELEFY KK+Q+KKGKGAA
Sbjct:  114 YLSHYGVELGRKKKSASSTKKDGEEGEEAAVAAPEEVKKSNHLLRKIASRQEGRSLDSHIEDQFASGRLLACISSRPGQCGRADGYILEGKELEFYMKKIQKKKGKGAA 222

[Close]

BLAST of Cicer_arietinum_v1_Contig1229 vs. SwissProt
Match: RS8_RAT (40S ribosomal protein S8 OS=Rattus norvegicus GN=Rps8 PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 1.442e-20
Identity = 47/102 (46.08%), Postives = 66/102 (64.71%), Query Frame = 2

Query:   26 YLQHYGVEIGRXXXXXXXXXDSXXXXXXXXXXXKKSNHVQRKLENRQKDRQLDSHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFYTKKLQRKKGK 331
            Y  HY + +GR         +            K+S  +Q+K + R+K+ ++ S +EEQF  G+LLACI+SRPGQCGRADGY+LEGKELEFY +K++ +KGK
Sbjct:  113 YESHYALPLGRKKGAKLTPEEEEILNK------KRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK 208

[Close]

BLAST of Cicer_arietinum_v1_Contig1229 vs. SwissProt
Match: RS8_MOUSE (40S ribosomal protein S8 OS=Mus musculus GN=Rps8 PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 1.442e-20
Identity = 47/102 (46.08%), Postives = 66/102 (64.71%), Query Frame = 2

Query:   26 YLQHYGVEIGRXXXXXXXXXDSXXXXXXXXXXXKKSNHVQRKLENRQKDRQLDSHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFYTKKLQRKKGK 331
            Y  HY + +GR         +            K+S  +Q+K + R+K+ ++ S +EEQF  G+LLACI+SRPGQCGRADGY+LEGKELEFY +K++ +KGK
Sbjct:  113 YESHYALPLGRKKGAKLTPEEEEILNK------KRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK 208

[Close]

BLAST of Cicer_arietinum_v1_Contig1229 vs. SwissProt
Match: RS8_MACFA (40S ribosomal protein S8 OS=Macaca fascicularis GN=RPS8 PE=2 SV=3)

HSP 1 Score: 98.2117 bits (243), Expect = 1.442e-20
Identity = 47/102 (46.08%), Postives = 66/102 (64.71%), Query Frame = 2

Query:   26 YLQHYGVEIGRXXXXXXXXXDSXXXXXXXXXXXKKSNHVQRKLENRQKDRQLDSHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFYTKKLQRKKGK 331
            Y  HY + +GR         +            K+S  +Q+K + R+K+ ++ S +EEQF  G+LLACI+SRPGQCGRADGY+LEGKELEFY +K++ +KGK
Sbjct:  113 YESHYALPLGRKKGAKLTPEEEEILNK------KRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK 208

[Close]

BLAST of Cicer_arietinum_v1_Contig1229 vs. SwissProt
Match: RS8_ICTPU (40S ribosomal protein S8 OS=Ictalurus punctatus GN=rps8 PE=2 SV=3)

HSP 1 Score: 98.2117 bits (243), Expect = 1.442e-20
Identity = 48/102 (47.06%), Postives = 65/102 (63.73%), Query Frame = 2

Query:   26 YLQHYGVEIGRXXXXXXXXXDSXXXXXXXXXXXKKSNHVQRKLENRQKDRQLDSHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFYTKKLQRKKGK 331
            Y  HY + +GR         +            K+S  VQ+K + R+K+ ++   ++EQF  G+LLACISSRPGQCGRADGY+LEGKELEFY +K++ KKGK
Sbjct:  113 YESHYALPLGRKKGAKLTPEEEDILNK------KRSKKVQKKFDKRRKNSKISPLLDEQFQQGKLLACISSRPGQCGRADGYVLEGKELEFYLRKIKAKKGK 208

[Close]

BLAST of Cicer_arietinum_v1_Contig1229 vs. SwissProt
Match: RS8_HUMAN (40S ribosomal protein S8 OS=Homo sapiens GN=RPS8 PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 1.442e-20
Identity = 47/102 (46.08%), Postives = 66/102 (64.71%), Query Frame = 2

Query:   26 YLQHYGVEIGRXXXXXXXXXDSXXXXXXXXXXXKKSNHVQRKLENRQKDRQLDSHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFYTKKLQRKKGK 331
            Y  HY + +GR         +            K+S  +Q+K + R+K+ ++ S +EEQF  G+LLACI+SRPGQCGRADGY+LEGKELEFY +K++ +KGK
Sbjct:  113 YESHYALPLGRKKGAKLTPEEEEILNK------KRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK 208

[Close]

BLAST of Cicer_arietinum_v1_Contig1229 vs. TrEMBL
Match: C6T0G7_SOYBN (Ribosomal protein S8 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.350e-37
Identity = 82/105 (78.10%), Postives = 83/105 (79.05%), Query Frame = 2

Query:   26 YLQHYGVEIGRXXXXXXXXXDSXXXXXXXXXXXKKSNHVQRKLENRQKDRQLDSHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFYTKKLQRKKGKGAA 340
            YLQHYGVEIGR         DS           KKSNHVQRKLE RQKDR+LDSHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFY KKLQRKKGKGAA
Sbjct:  114 YLQHYGVEIGRKKKVASKK-DSTEEGEAAAEETKKSNHVQRKLEKRQKDRKLDSHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAA 217

[Close]

BLAST of Cicer_arietinum_v1_Contig1229 vs. TrEMBL
Match: C6T968_SOYBN (Ribosomal protein S8 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.763e-37
Identity = 82/105 (78.10%), Postives = 82/105 (78.10%), Query Frame = 2

Query:   26 YLQHYGVEIGRXXXXXXXXXDSXXXXXXXXXXXKKSNHVQRKLENRQKDRQLDSHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFYTKKLQRKKGKGAA 340
            YLQHYGVEIGR         DS           KKSNHVQRKLE RQKDR LDSHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFY KKLQRKKGKGAA
Sbjct:  114 YLQHYGVEIGRKKKVAAKK-DSTEEGEAAAEETKKSNHVQRKLEKRQKDRNLDSHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAA 217

[Close]

BLAST of Cicer_arietinum_v1_Contig1229 vs. TrEMBL
Match: B7FMW0_MEDTR (Ribosomal protein S8 OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.546e-36
Identity = 79/105 (75.24%), Postives = 82/105 (78.10%), Query Frame = 2

Query:   26 YLQHYGVEIGRXXXXXXXXXDSXXXXXXXXXXXKKSNHVQRKLENRQKDRQLDSHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFYTKKLQRKKGKGAA 340
            YLQHYGVE+GR         DS           KKS+HVQRKLE RQKDRQLDSHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFY KKLQ+KKGK AA
Sbjct:  114 YLQHYGVEVGRKKKTAAKK-DSAEEAEVVAEEVKKSSHVQRKLEQRQKDRQLDSHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQKKKGKSAA 217

[Close]

BLAST of Cicer_arietinum_v1_Contig1229 vs. TrEMBL
Match: B7FGL5_MEDTR (Ribosomal protein S8 OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.546e-36
Identity = 79/105 (75.24%), Postives = 82/105 (78.10%), Query Frame = 2

Query:   26 YLQHYGVEIGRXXXXXXXXXDSXXXXXXXXXXXKKSNHVQRKLENRQKDRQLDSHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFYTKKLQRKKGKGAA 340
            YLQHYGVE+GR         DS           KKS+HVQRKLE RQKDRQLDSHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFY KKLQ+KKGK AA
Sbjct:  113 YLQHYGVEVGRKKKTAAKK-DSAEEAEVVAEEVKKSSHVQRKLEQRQKDRQLDSHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQKKKGKSAA 216

[Close]

BLAST of Cicer_arietinum_v1_Contig1229 vs. TrEMBL
Match: C6T514_SOYBN (Ribosomal protein S8 (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 4.343e-36
Identity = 83/132 (62.88%), Postives = 92/132 (69.70%), Query Frame = 2

Query:   26 YLQHYGVEIGRXXXXXXXXXDSXXXXXXXXXXX-KKSNHVQRKLENRQKDRQLDSHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFYTKKLQRKKGKGAA*L*CFPSYI*LHLFLIVQQYLVPFKL 418
            YLQHYGVEIGR          +            KKSNH+QRKLE RQKDR+LD+HIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFY KKLQ+KKGKG   +  FP +  L+ F      LV FK+
Sbjct:  114 YLQHYGVEIGRKKKTAAKKETAEEGAAAVAVEEAKKSNHLQRKLEKRQKDRKLDAHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQKKKGKGCCLILVFPIF--LYGFSCFYMLLVQFKV 243

[Close]

BLAST of Cicer_arietinum_v1_Contig1229 vs. TrEMBL
Match: C6TBA9_SOYBN (Ribosomal protein S8 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 9.676e-36
Identity = 78/107 (72.90%), Postives = 82/107 (76.64%), Query Frame = 2

Query:   26 YLQHYGVEIGRXXXXXXXXX--DSXXXXXXXXXXXKKSNHVQRKLENRQKDRQLDSHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFYTKKLQRKKGKGAA 340
            YLQHYGVEIGR           +            KKSNHVQRKLE RQKDR+LD+HIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFY KKLQ+KKGKGAA
Sbjct:  114 YLQHYGVEIGRKKKTAAKKETAEEGGDAVAATEEAKKSNHVQRKLEKRQKDRKLDAHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQKKKGKGAA 220

[Close]

BLAST of Cicer_arietinum_v1_Contig1229 vs. TrEMBL
Match: B9T7X5_RICCO (Ribosomal protein S8 OS=Ricinus communis GN=RCOM_0438180 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.545e-33
Identity = 75/105 (71.43%), Postives = 79/105 (75.24%), Query Frame = 2

Query:   26 YLQHYGVEIGRXXXXXXXXX-DSXXXXXXXXXXXKKSNHVQRKLENRQKDRQLDSHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFYTKKLQRKKGKGA 337
            YLQHYGV+IGR          +            KKSNHV RKLE RQKDR+LD+HIEEQF GGRLLACISSRPGQCGRADGYILEGKELEFY KKLQRKKGKGA
Sbjct:  114 YLQHYGVDIGRKKKTVAKKETEEGEGEGAAAEESKKSNHVIRKLEKRQKDRKLDAHIEEQFWGGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGA 218

[Close]

BLAST of Cicer_arietinum_v1_Contig1229 vs. TrEMBL
Match: B6DMH1_9LAMI (Ribosomal protein S8 OS=Picrorhiza kurrooa PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.018e-33
Identity = 75/105 (71.43%), Postives = 79/105 (75.24%), Query Frame = 2

Query:   26 YLQHYGVEIGRXXXXXXXXXDSXXXXXXXXXXXKKSNHVQRKLENRQKDRQLDSHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFYTKKLQRKKGKGAA 340
            YLQHYGVEIGR                      KKSNHVQRKLE RQ++R++DSHIEEQF GGRLLA ISSRPGQCGRADGYILEGKELEFY KKLQRKKGKGAA
Sbjct:  114 YLQHYGVEIGRKKKTAAKKEGEEAEVVAEEV--KKSNHVQRKLEKRQEERKIDSHIEEQFSGGRLLAAISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAA 216

[Close]

BLAST of Cicer_arietinum_v1_Contig1229 vs. TrEMBL
Match: B4FGG1_MAIZE (Ribosomal protein S8 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 3.442e-33
Identity = 73/107 (68.22%), Postives = 79/107 (73.83%), Query Frame = 2

Query:   26 YLQHYGVEIGRXXXXXXXXXDSXXXXXXXXXXX--KKSNHVQRKLENRQKDRQLDSHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFYTKKLQRKKGKGAA 340
            YL HYGV+IGR         D+             KKSNHVQRK+E RQ+DR LD+HIEEQFG GRLLACIS+RPGQCGRADGYILEGKELEFY KKLQRKKGKG A
Sbjct:  114 YLTHYGVDIGRKKKVPVAKKDATEGQEGEAIAEETKKSNHVQRKIEKRQQDRALDTHIEEQFGSGRLLACISARPGQCGRADGYILEGKELEFYMKKLQRKKGKGVA 220

[Close]

BLAST of Cicer_arietinum_v1_Contig1229 vs. TrEMBL
Match: Q676W6_HYAOR (Ribosomal protein S8 (Fragment) OS=Hyacinthus orientalis GN=RPS8 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 4.495e-33
Identity = 74/106 (69.81%), Postives = 78/106 (73.58%), Query Frame = 2

Query:   26 YLQHYGVEIGRXXXXXXXXXD--SXXXXXXXXXXXKKSNHVQRKLENRQKDRQLDSHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFYTKKLQRKKGKGA 337
            YLQHYGVEIGR         +              KKSNHV RK+ENRQK+R LD HIEEQFGGGRLLA ISSRPGQCGR+DGYILEGKELEFY KKLQRKKGKGA
Sbjct:   10 YLQHYGVEIGRKKKAPAAKKELSEGDAAAAAAEEAKKSNHVLRKIENRQKERTLDQHIEEQFGGGRLLAAISSRPGQCGRSDGYILEGKELEFYMKKLQRKKGKGA 115

[Close]

BLAST of Cicer_arietinum_v1_Contig1229 vs. TAIR peptide
Match: AT5G59240.1 (| Symbols: | Ribosomal protein S8e family protein | chr5:23902626-23903670 REVERSE LENGTH=210)

HSP 1 Score: 137.502 bits (345), Expect = 2.646e-33
Identity = 70/104 (67.31%), Postives = 76/104 (73.08%), Query Frame = 2

Query:   26 YLQHYGVEIGRXXXXXXXXXDSXXXXXXXXXXXKKSNHVQRKLENRQKDRQLDSHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFYTKKLQRKKGKGA 337
            YLQHYGV+IGR         +            KKSNHVQRKLE RQ+ R LDSH+EEQF  GRLLACI+SRPGQCGRADGYILEGKELEFY KKLQ+KKGK A
Sbjct:  114 YLQHYGVDIGRKKKGEAVTTEEV----------KKSNHVQRKLEMRQEGRALDSHLEEQFSSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQKKKGKNA 207

[Close]

BLAST of Cicer_arietinum_v1_Contig1229 vs. TAIR peptide
Match: AT5G20290.1 (| Symbols: | Ribosomal protein S8e family protein | chr5:6851695-6853012 REVERSE LENGTH=222)

HSP 1 Score: 132.88 bits (333), Expect = 6.516e-32
Identity = 67/109 (61.47%), Postives = 76/109 (69.72%), Query Frame = 2

Query:   26 YLQHYGVEIGRXXXXXXXXX----DSXXXXXXXXXXXKKSNHVQRKLENRQKDRQLDSHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFYTKKLQRKKGKGAA 340
            YL HYGVE+GR             +            KKSNH+ RK+ +RQ+ R LDSHIE+QF  GRLLACISSRPGQCGRADGYILEGKELEFY KK+Q+KKGKGAA
Sbjct:  114 YLSHYGVELGRKKKSASSTKKDGEEGEEAAVAAPEEVKKSNHLLRKIASRQEGRSLDSHIEDQFASGRLLACISSRPGQCGRADGYILEGKELEFYMKKIQKKKGKGAA 222

The following BLAST results are available for this feature:

BLAST of Cicer_arietinum_v1_Contig1229 vs. SwissProt
BLAST of Cicer_arietinum_v1_Contig1229 vs. TrEMBL
BLAST of Cicer_arietinum_v1_Contig1229 vs. TAIR peptide

BLAST of Cicer_arietinum_v1_Contig1229 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 10


Match Name	E-value	Identity	Description
RS8_PRUAR	5.105e-34	69.23	40S ribosomal protein S8 OS=Prunus armeniaca GN=RP...	[more]
RS8_ORYSJ	1.137e-33	68.87	40S ribosomal protein S8 OS=Oryza sativa subsp. ja...	[more]
RS82_ARATH	2.145e-32	67.31	40S ribosomal protein S8-2 OS=Arabidopsis thaliana...	[more]
RS8_MAIZE	3.659e-32	66.98	40S ribosomal protein S8 OS=Zea mays GN=RPS8 PE=2 ...	[more]
RS81_ARATH	5.283e-31	61.47	40S ribosomal protein S8-1 OS=Arabidopsis thaliana...	[more]
RS8_RAT	1.442e-20	46.08	40S ribosomal protein S8 OS=Rattus norvegicus GN=R...	[more]
RS8_MOUSE	1.442e-20	46.08	40S ribosomal protein S8 OS=Mus musculus GN=Rps8 P...	[more]
RS8_MACFA	1.442e-20	46.08	40S ribosomal protein S8 OS=Macaca fascicularis GN...	[more]
RS8_ICTPU	1.442e-20	47.06	40S ribosomal protein S8 OS=Ictalurus punctatus GN...	[more]
RS8_HUMAN	1.442e-20	46.08	40S ribosomal protein S8 OS=Homo sapiens GN=RPS8 P...	[more]

BLAST of Cicer_arietinum_v1_Contig1229 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
C6T0G7_SOYBN	1.350e-37	78.10	Ribosomal protein S8 OS=Glycine max PE=2 SV=1	[more]
C6T968_SOYBN	1.763e-37	78.10	Ribosomal protein S8 OS=Glycine max PE=2 SV=1	[more]
B7FMW0_MEDTR	2.546e-36	75.24	Ribosomal protein S8 OS=Medicago truncatula PE=2 S...	[more]
B7FGL5_MEDTR	2.546e-36	75.24	Ribosomal protein S8 OS=Medicago truncatula PE=2 S...	[more]
C6T514_SOYBN	4.343e-36	62.88	Ribosomal protein S8 (Fragment) OS=Glycine max PE=...	[more]
C6TBA9_SOYBN	9.676e-36	72.90	Ribosomal protein S8 OS=Glycine max PE=2 SV=1	[more]
B9T7X5_RICCO	1.545e-33	71.43	Ribosomal protein S8 OS=Ricinus communis GN=RCOM_0...	[more]
B6DMH1_9LAMI	2.018e-33	71.43	Ribosomal protein S8 OS=Picrorhiza kurrooa PE=2 SV...	[more]
B4FGG1_MAIZE	3.442e-33	68.22	Ribosomal protein S8 OS=Zea mays PE=2 SV=1	[more]
Q676W6_HYAOR	4.495e-33	69.81	Ribosomal protein S8 (Fragment) OS=Hyacinthus orie...	[more]

BLAST of Cicer_arietinum_v1_Contig1229 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 2


Match Name	E-value	Identity	Description
AT5G59240.1	2.646e-33	67.31	\| Symbols: \| Ribosomal protein S8e family protein...	[more]
AT5G20290.1	6.516e-32	61.47	\| Symbols: \| Ribosomal protein S8e family protein...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022309	Ribosomal protein S8e/ribosomal biogenesis NSA2	PFAM	PF01201	Ribosomal_S8e	coord: 45..92 score: 6.2
None	No IPR available	PANTHER	PTHR10394	40S RIBOSOMAL PROTEIN S8	coord: 9..110 score: 9.5
None	No IPR available	PANTHER	PTHR10394:SF1	40S RIBOSOMAL PROTEIN S8	coord: 9..110 score: 9.5
None	No IPR available	SEG	seg	seg	coord: 20..28 score: NAcoord: 31..41 score
None	No IPR available	SEG	seg	seg	coord: 96..107 score

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>Cicer_arietinum_v1_Contig1229 ID=Cicer_arietinum_v1_Contig1229; Name=Cicer_arietinum_v1_Contig1229; organism=Cicer arietinum; type=contig; length=427bp
GATTTCGAGCGGCCGCCCGGGCAGGTACCTTCAGCACTATGGTGTTGAAA
TTGGTAGAAAAAAGAAATCAGCTGCAGCCAAGAAGGATTCTGTAGAGGAG
GTTGAAGCCGCCACTGAAGAAGCCAAGAAAAGTAATCATGTGCAGAGGAA
ACTTGAGAACCGTCAAAAAGATCGTCAGCTAGATTCCCACATTGAAGAGC
AGTTTGGTGGTGGTCGTTTGCTGGCCTGTATTTCATCTCGTCCTGGTCAA
TGTGGCAGGGCTGATGGGTACATCCTTGAAGGTAAGGAACTGGAATTTTA
CACGAAGAAGTTACAGAGGAAGAAGGGAAAGGGTGCTGCTTAATTGTAGT
GTTTTCCGTCTTATATATGACTTCATTTGTTTTTAATAGTGCAACAATAT
TTGGTACCTTTCAAGTTGATGTCATTT

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR022309	Ribosomal_Se8/biogenesis_NSA2

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Cicer_arietinum_v1_Contig1229