Cicer_arietinum_v1_Contig1258

Contig Overview
NameCicer_arietinum_v1_Contig1258
Unique NameCicer_arietinum_v1_Contig1258
Typecontig
OrganismCicer arietinum (chickpea)
Sequence length546
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
GR914929ESTGR914929:1..307 -
FE668993ESTFE668993:19..464 +
GR916249ESTGR916249:256..519 +
FD449498ESTFD449498:282..517 +
GR917618ESTGR917618:256..518 +
FD449548ESTFD449548:282..507 +
HO067073ESTHO067073:340..488 -
GR912836ESTGR912836:258..547 -
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Cicer arietinum unigene v1Cicer arietinum unigene v1contig
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
GR914929GR914929Cicer arietinumEST
FE668993FE668993Cicer arietinumEST
GR916249GR916249Cicer arietinumEST
FD449498FD449498Cicer arietinumEST
GR917618GR917618Cicer arietinumEST
FD449548FD449548Cicer arietinumEST
HO067073HO067073Cicer arietinumEST
GR912836GR912836Cicer arietinumEST


Homology
BLAST of Cicer_arietinum_v1_Contig1258 vs. SwissProt
Match: AGP16_ARATH (Arabinogalactan peptide 16 OS=Arabidopsis thaliana GN=AGP16 PE=1 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 2.852e-9
Identity = 33/75 (44.00%), Postives = 46/75 (61.33%), Query Frame = 1
Query:  100 MAAPKHSFGFGVVAMLATLIFALSLPAAVHSQSLAPAPAPTSDGSSVDQGIAYXXXXXXXXXTYIIHSADISSTF 324
            MA+     GF + + +  +I +L+      +QSLAPAPAPTSDG+S+DQGIAY         TY+IH  D SS++
Sbjct:    1 MASRNSVTGFALFSFVFAVILSLA-----GAQSLAPAPAPTSDGTSIDQGIAYLLMVVALVLTYLIHPLDASSSY 70          
BLAST of Cicer_arietinum_v1_Contig1258 vs. SwissProt
Match: AGP20_ARATH (Arabinogalactan peptide 20 OS=Arabidopsis thaliana GN=AGP20 PE=3 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 8.298e-9
Identity = 33/63 (52.38%), Postives = 43/63 (68.25%), Query Frame = 1
Query:  133 VVAMLATLIFALSLPAAVHSQSLAPAPAPTSDGSSVDQGIAYXXXXXXXXXTYIIHSADISST 321
            V+A+ A  +FA+  P A  +QSLAPAP+PTSDG+S+DQGIAY         TY+IH  D SS+
Sbjct:    9 VIALFA-FVFAVISPFA-GAQSLAPAPSPTSDGTSIDQGIAYLLMVVALVLTYLIHPLDASSS 69          
BLAST of Cicer_arietinum_v1_Contig1258 vs. TrEMBL
Match: C6SV73_SOYBN (Putative uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.222e-15
Identity = 43/70 (61.43%), Postives = 54/70 (77.14%), Query Frame = 1
Query:  100 MAAPKHSFGFGVVA-MLATLIFALSLPAAVHSQSLAPAPAPTSDGSSVDQGIAYXXXXXXXXXTYIIHSA 306
            MA+ + SFGFGVVA ++ +LIF L +P AVH+QSLAPAPAPTSDG+S+DQGIAY         TY+IHS+
Sbjct:    1 MASFRFSFGFGVVAAVVLSLIFTLYMPVAVHAQSLAPAPAPTSDGTSIDQGIAYVLMMLALALTYLIHSS 70          
BLAST of Cicer_arietinum_v1_Contig1258 vs. TrEMBL
Match: B9RCN6_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1691010 PE=4 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.341e-10
Identity = 33/61 (54.10%), Postives = 45/61 (73.77%), Query Frame = 1
Query:  142 MLATLIFALSLPAAVHSQSLAPAPAPTSDGSSVDQGIAYXXXXXXXXXTYIIHSADISSTF 324
            ++  LIFA++LP  V +QS APAPAPTSDG+S+DQGIAY         TY+IH+AD++ +F
Sbjct:   10 VVVALIFAIALP--VQAQSSAPAPAPTSDGTSIDQGIAYVLMLVALVLTYLIHAADLTCSF 68          
BLAST of Cicer_arietinum_v1_Contig1258 vs. TrEMBL
Match: C5YUS6_SORBI (Putative uncharacterized protein Sb09g007150 OS=Sorghum bicolor GN=Sb09g007150 PE=4 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 3.462e-9
Identity = 32/63 (50.79%), Postives = 43/63 (68.25%), Query Frame = 1
Query:  136 VAMLATLIFALSLPAAVHSQSLAPAPAPTSDGSSVDQGIAYXXXXXXXXXTYIIHSADISSTF 324
            +A+ A L+FA+++PA   +Q  APAPAPTSDG+S+DQGIAY         TY+IH  D SS +
Sbjct:   34 LAIAAALVFAVAMPAVADAQ--APAPAPTSDGTSIDQGIAYLLMIVALVLTYLIHPLDASSPY 94          
BLAST of Cicer_arietinum_v1_Contig1258 vs. TrEMBL
Match: A9PA79_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_646717 PE=4 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 3.462e-9
Identity = 35/64 (54.69%), Postives = 46/64 (71.88%), Query Frame = 1
Query:  133 VVAMLATLIFALSLPAAVHSQSLAPAPAPTSDGSSVDQGIAYXXXXXXXXXTYIIHSADISSTF 324
            VVA+L  ++FA+ LP A   Q+ APAPAPTSDG+S+DQGIAY         TY+IH+AD+S +F
Sbjct:   11 VVALL--VVFAIVLPIA---QAQAPAPAPTSDGTSIDQGIAYVLMMVALALTYLIHAADLSHSF 69          
BLAST of Cicer_arietinum_v1_Contig1258 vs. TrEMBL
Match: B6SMF8_MAIZE (AGP16 OS=Zea mays PE=4 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 7.713e-9
Identity = 35/66 (53.03%), Postives = 44/66 (66.67%), Query Frame = 1
Query:  130 GVVAM-LATLIFALSLPAAVHSQSLAPAPAPTSDGSSVDQGIAYXXXXXXXXXTYIIHSADISSTF 324
            G VAM +A L+FA+ +PAA  +Q  APAPAPTSDG+S+D GIAY         TY+IH  D SS +
Sbjct:    9 GAVAMAVAALVFAILMPAAAAAQ--APAPAPTSDGTSIDLGIAYILMLVALVLTYLIHPLDASSPY 72          
BLAST of Cicer_arietinum_v1_Contig1258 vs. TrEMBL
Match: D7TVC5_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_25.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00019489001 PE=4 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 1.007e-8
Identity = 32/56 (57.14%), Postives = 40/56 (71.43%), Query Frame = 1
Query:  133 VVAMLATLIFALSLPAAVHSQSLAPAPAPTSDGSSVDQGIAYXXXXXXXXXTYIIH 300
            V+  LA L+F ++LPA V +QS+APAPAPTSDG ++DQGIAY         TYIIH
Sbjct:    7 VLMALAVLVFVIALPA-VRAQSIAPAPAPTSDGITIDQGIAYVLMLLALVLTYIIH 61          
BLAST of Cicer_arietinum_v1_Contig1258 vs. TrEMBL
Match: B9I537_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_569476 PE=4 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 1.007e-8
Identity = 30/61 (49.18%), Postives = 41/61 (67.21%), Query Frame = 1
Query:  118 SFGFGVVAMLATLIFALSLPAAVHSQSLAPAPAPTSDGSSVDQGIAYXXXXXXXXXTYIIH 300
            +  FGV A +  +IFA+S+P A H QS APAP+PTSDG+++DQG+A          TY+IH
Sbjct:    5 NISFGVFAAIVAIIFAISMPLA-HGQSSAPAPSPTSDGAAIDQGVACILMLVALVLTYLIH 64          
BLAST of Cicer_arietinum_v1_Contig1258 vs. TrEMBL
Match: Q8L9T8_ARATH (At5g24105 OS=Arabidopsis thaliana GN=At5g24105 PE=4 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 2.244e-8
Identity = 30/55 (54.55%), Postives = 40/55 (72.73%), Query Frame = 1
Query:  136 VAMLATLIFALSLPAAVHSQSLAPAPAPTSDGSSVDQGIAYXXXXXXXXXTYIIH 300
            V+ + ++IFA+ LP A H+QS APAPAPTSDG+++DQGIAY         TY+IH
Sbjct:   10 VSTIVSIIFAILLPMA-HAQSAAPAPAPTSDGTTIDQGIAYVLMLVALVLTYLIH 63          
BLAST of Cicer_arietinum_v1_Contig1258 vs. TrEMBL
Match: B9GL90_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_548369 PE=4 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 2.931e-8
Identity = 32/66 (48.48%), Postives = 45/66 (68.18%), Query Frame = 1
Query:  136 VAMLATLIFALSLPAAVH---SQSLAPAPAPTSDGSSVDQGIAYXXXXXXXXXTYIIHSADISSTF 324
            V+ +A  + AL+L +A     +Q+ APAPAPTSDG+S+DQGIAY         TY+IH+AD+S +F
Sbjct:    4 VSRIAVAVVALALASAFVLPVAQAQAPAPAPTSDGTSIDQGIAYVLMLVALVLTYLIHAADLSHSF 69          
BLAST of Cicer_arietinum_v1_Contig1258 vs. TrEMBL
Match: A5AM00_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_012134 PE=4 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 2.931e-8
Identity = 31/59 (52.54%), Postives = 41/59 (69.49%), Query Frame = 1
Query:  133 VVAMLATLIFALSLPAAVHSQSLAPAPAPTSDGSSVDQGIAYXXXXXXXXXTYIIHSAD 309
            VV  +  L++A+ LP+A H+QSLAPAPAPTSDG+++DQGIA          TY+IH  D
Sbjct:    9 VVVAIIALLYAVVLPSA-HAQSLAPAPAPTSDGTAIDQGIACVLMLVALVLTYLIHPLD 66          
BLAST of Cicer_arietinum_v1_Contig1258 vs. TAIR peptide
Match: AT5G24105.1 (| Symbols: AGP41 | arabinogalactan protein 41 | chr5:8152097-8152656 FORWARD LENGTH=63)

HSP 1 Score: 62.3882 bits (150), Expect = 1.807e-10
Identity = 30/55 (54.55%), Postives = 40/55 (72.73%), Query Frame = 1
Query:  136 VAMLATLIFALSLPAAVHSQSLAPAPAPTSDGSSVDQGIAYXXXXXXXXXTYIIH 300
            V+ + ++IFA+ LP A H+QS APAPAPTSDG+++DQGIAY         TY+IH
Sbjct:   10 VSTIVSIIFAILLPMA-HAQSAAPAPAPTSDGTTIDQGIAYVLMLVALVLTYLIH 63          
BLAST of Cicer_arietinum_v1_Contig1258 vs. TAIR peptide
Match: AT2G46330.1 (| Symbols: AGP16, ATAGP16 | arabinogalactan protein 16 | chr2:19018730-19019108 REVERSE LENGTH=73)

HSP 1 Score: 61.6178 bits (148), Expect = 3.083e-10
Identity = 33/75 (44.00%), Postives = 46/75 (61.33%), Query Frame = 1
Query:  100 MAAPKHSFGFGVVAMLATLIFALSLPAAVHSQSLAPAPAPTSDGSSVDQGIAYXXXXXXXXXTYIIHSADISSTF 324
            MA+     GF + + +  +I +L+      +QSLAPAPAPTSDG+S+DQGIAY         TY+IH  D SS++
Sbjct:    1 MASRNSVTGFALFSFVFAVILSLA-----GAQSLAPAPAPTSDGTSIDQGIAYLLMVVALVLTYLIHPLDASSSY 70          
BLAST of Cicer_arietinum_v1_Contig1258 vs. TAIR peptide
Match: AT3G61640.1 (| Symbols: AGP20, AtAGP20 | arabinogalactan protein 20 | chr3:22810283-22810629 REVERSE LENGTH=74)

HSP 1 Score: 60.077 bits (144), Expect = 8.970e-10
Identity = 33/63 (52.38%), Postives = 43/63 (68.25%), Query Frame = 1
Query:  133 VVAMLATLIFALSLPAAVHSQSLAPAPAPTSDGSSVDQGIAYXXXXXXXXXTYIIHSADISST 321
            V+A+ A  +FA+  P A  +QSLAPAP+PTSDG+S+DQGIAY         TY+IH  D SS+
Sbjct:    9 VIALFA-FVFAVISPFA-GAQSLAPAPSPTSDGTSIDQGIAYLLMVVALVLTYLIHPLDASSS 69          
BLAST of Cicer_arietinum_v1_Contig1258 vs. TAIR peptide
Match: AT5G53250.1 (| Symbols: AGP22, ATAGP22 | arabinogalactan protein 22 | chr5:21603715-21604007 FORWARD LENGTH=63)

HSP 1 Score: 50.447 bits (119), Expect = 7.107e-7
Identity = 26/61 (42.62%), Postives = 34/61 (55.74%), Query Frame = 1
Query:  118 SFGFGVVAMLATLIFALSLPAAVHSQSLAPAPAPTSDGSSVDQGIAYXXXXXXXXXTYIIH 300
            S  F +  +   +I ++ L     S S +PAPAPTSDG+S+DQGIAY         TY IH
Sbjct:    3 SLKFPLEILAVFVIISVILLPIAQSHSSSPAPAPTSDGTSIDQGIAYVLMMVALALTYFIH 63          
The following BLAST results are available for this feature:
BLAST of Cicer_arietinum_v1_Contig1258 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 2
Match NameE-valueIdentityDescription
AGP16_ARATH2.852e-944.00Arabinogalactan peptide 16 OS=Arabidopsis thaliana... [more]
AGP20_ARATH8.298e-952.38Arabinogalactan peptide 20 OS=Arabidopsis thaliana... [more]
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BLAST of Cicer_arietinum_v1_Contig1258 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
C6SV73_SOYBN4.222e-1561.43Putative uncharacterized protein OS=Glycine max PE... [more]
B9RCN6_RICCO5.341e-1054.10Putative uncharacterized protein OS=Ricinus commun... [more]
C5YUS6_SORBI3.462e-950.79Putative uncharacterized protein Sb09g007150 OS=So... [more]
A9PA79_POPTR3.462e-954.69Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
B6SMF8_MAIZE7.713e-953.03AGP16 OS=Zea mays PE=4 SV=1[more]
D7TVC5_VITVI1.007e-857.14Whole genome shotgun sequence of line PN40024, sca... [more]
B9I537_POPTR1.007e-849.18Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
Q8L9T8_ARATH2.244e-854.55At5g24105 OS=Arabidopsis thaliana GN=At5g24105 PE=... [more]
B9GL90_POPTR2.931e-848.48Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
A5AM00_VITVI2.931e-852.54Putative uncharacterized protein OS=Vitis vinifera... [more]
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BLAST of Cicer_arietinum_v1_Contig1258 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 4
Match NameE-valueIdentityDescription
AT5G24105.11.807e-1054.55| Symbols: AGP41 | arabinogalactan protein 41 | ch... [more]
AT2G46330.13.083e-1044.00| Symbols: AGP16, ATAGP16 | arabinogalactan protei... [more]
AT3G61640.18.970e-1052.38| Symbols: AGP20, AtAGP20 | arabinogalactan protei... [more]
AT5G53250.17.107e-742.62| Symbols: AGP22, ATAGP22 | arabinogalactan protei... [more]
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InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009424Arabinogalactan peptide, AGPPFAMPF06376DUF1070coord: 48..99
score: 6.1
NoneNo IPR availableSEGsegsegcoord: 86..94
score
NoneNo IPR availableSEGsegsegcoord: 8..24
score: NAcoord: 49..62
score: NAcoord: 64..73
score
NoneNo IPR availableSEGsegsegcoord: 42..53
score

Sequences
The following sequences are available for this feature:

contig sequence

>Cicer_arietinum_v1_Contig1258 ID=Cicer_arietinum_v1_Contig1258; Name=Cicer_arietinum_v1_Contig1258; organism=Cicer arietinum; type=contig; length=546bp
TAGCGTGGTCGCGGCCGAGGTCCGCAATTCACAGAGACGCCGCAGAGAAA
GAAATATAATCAAGTCTATCAAAACACATTACGTTCTTATCTACGCAAAA
TGGCGGCACCGAAACATTCATTCGGATTCGGAGTTGTGGCCATGCTCGCC
ACTCTCATTTTCGCTCTTTCACTCCCCGCCGCTGTTCACTCTCAATCTCT
TGCACCTGCACCTGCTCCTACCAGCGACGGATCATCGGTTGATCAAGGAA
TAGCTTATTTGTTGATGTTGTTGGCACTGGTACTGACCTACATCATTCAT
TCGGCTGACATTTCATCTACCTTCTGAATTGCATGTTGATGTTGGAGAGA
GGGCTTTGTGTTTTTATTTATTATTATTATGAGTTATGATTAATTAACGT
GTTTGTAGAACGCGGCGGAGAAAGGGGATAATATGTTATGTAATGATAAT
AATGATAGATTGAGGTGTTATGTTTGTTTTCCTAGTGAGTGAAGAAANAG
AATATGATCCAGTTCATAGTACCTCNGGCCGCGACCCACGCTAATC
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR009424AGP16/20/22/41