Cicer_arietinum_v1_Contig1284

Contig Overview
NameCicer_arietinum_v1_Contig1284
Unique NameCicer_arietinum_v1_Contig1284
Typecontig
OrganismCicer arietinum (chickpea)
Sequence length516
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
GR916821ESTGR916821:1..402 +
GR916873ESTGR916873:40..498 +
GR916851ESTGR916851:40..501 +
GR916911ESTGR916911:93..516 -
GR916907ESTGR916907:94..516 -
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Cicer arietinum unigene v1Cicer arietinum unigene v1contig
Analyses
This contig is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum unigene v12010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs Trembl2010-12-28
InterProScan analysis for Cicer arietinum unigene v12010-12-29
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
GR916821GR916821Cicer arietinumEST
GR916873GR916873Cicer arietinumEST
GR916851GR916851Cicer arietinumEST
GR916911GR916911Cicer arietinumEST
GR916907GR916907Cicer arietinumEST


Homology
[Close]
BLAST of Cicer_arietinum_v1_Contig1284 vs. TrEMBL
Match: C6YBB5_CATRO (Putative uncharacterized protein OS=Catharanthus roseus PE=4 SV=1)

HSP 1 Score: 317.775 bits (813), Expect = 2.427e-85
Identity = 156/157 (99.36%), Postives = 156/157 (99.36%), Query Frame = 3 
Query:   45 KQLCEVHWTESALSNLDIQITPAFVDEAL*SYWEVFAAGKAGHVKAYLTFNKNVPGWTEGALIGYFGRYSGTKDIHFAPTNAATGKPLQHSDIFLRDKVSGTLLMSVEGVAISNGRTGWFSLACVNLLLQGREDIDVFLFGAGKVAEAVILSLNYGA 515
            KQLCEVHWTESALSNLDIQITPAFVDEAL SYWEVFAAGKAGHVKAYLTFNKNVPGWTEGALIGYFGRYSGTKDIHFAPTNAATGKPLQHSDIFLRDKVSGTLLMSVEGVAISNGRTGWFSLACVNLLLQGREDIDVFLFGAGKVAEAVILSLNYGA
Sbjct:    3 KQLCEVHWTESALSNLDIQITPAFVDEALKSYWEVFAAGKAGHVKAYLTFNKNVPGWTEGALIGYFGRYSGTKDIHFAPTNAATGKPLQHSDIFLRDKVSGTLLMSVEGVAISNGRTGWFSLACVNLLLQGREDIDVFLFGAGKVAEAVILSLNYGA 159
[Close]
BLAST of Cicer_arietinum_v1_Contig1284 vs. TrEMBL
Match: C6YBA9_CATRO (Putative uncharacterized protein (Fragment) OS=Catharanthus roseus PE=4 SV=1)

HSP 1 Score: 317.775 bits (813), Expect = 2.427e-85
Identity = 156/157 (99.36%), Postives = 156/157 (99.36%), Query Frame = 3 
Query:   45 KQLCEVHWTESALSNLDIQITPAFVDEAL*SYWEVFAAGKAGHVKAYLTFNKNVPGWTEGALIGYFGRYSGTKDIHFAPTNAATGKPLQHSDIFLRDKVSGTLLMSVEGVAISNGRTGWFSLACVNLLLQGREDIDVFLFGAGKVAEAVILSLNYGA 515
            KQLCEVHWTESALSNLDIQITPAFVDEAL SYWEVFAAGKAGHVKAYLTFNKNVPGWTEGALIGYFGRYSGTKDIHFAPTNAATGKPLQHSDIFLRDKVSGTLLMSVEGVAISNGRTGWFSLACVNLLLQGREDIDVFLFGAGKVAEAVILSLNYGA
Sbjct:   12 KQLCEVHWTESALSNLDIQITPAFVDEALKSYWEVFAAGKAGHVKAYLTFNKNVPGWTEGALIGYFGRYSGTKDIHFAPTNAATGKPLQHSDIFLRDKVSGTLLMSVEGVAISNGRTGWFSLACVNLLLQGREDIDVFLFGAGKVAEAVILSLNYGA 168
[Close]
BLAST of Cicer_arietinum_v1_Contig1284 vs. TrEMBL
Match: A5WXT3_RHIRD (Sus OS=Rhizobium radiobacter GN=sus PE=4 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 7.410e-34
Identity = 71/153 (46.41%), Postives = 100/153 (65.36%), Query Frame = 3 
Query:   48 QLCEVHWTESALSNLDIQITPAFVDEAL*SYWEVFAAGKAGHVKAYLTFNKNVPGWTEGALIGYFGRYSGTKDIHFAPTNAATGKPLQHSDIFLRDKVSGTLLMSVEGVAISNGRTGWFSLACVNLLLQGREDIDVFLFGAGKVAEAVILSLN 506
            ++ E HW+E  L  L + ITPA V ++L  YW+  +  +   VK YL F+    GW EG LIG F  YSG K+IHF+P+N     PL+H DI LR K +G  L+S+EG AIS GRT WF+ AC++LLL  ++ I++FLFGAG++   ++ +LN
Sbjct:    4 EISERHWSEQKLQELGVAITPALVQDSLQDYWD--SQFEKRQVKKYLQFDSIPNGWREGVLIGCFKDYSGVKNIHFSPSNERNNLPLRHIDILLRRKSTGERLLSLEGKAISFGRTAWFAPACIDLLLNAKDKIEIFLFGAGELGREIVRALN 154
[Close]
BLAST of Cicer_arietinum_v1_Contig1284 vs. TrEMBL
Match: Q9WWF1_AGRRH (ORF18 protein OS=Agrobacterium rhizogenes GN=ORF18 PE=4 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.648e-15
Identity = 42/92 (45.65%), Postives = 56/92 (60.87%), Query Frame = 3 
Query:   48 QLCEVHWTESALSNLDIQITPAFVDEAL*SYWEVFAAGKAGHVKAYLTFNKNVPGWTEGALIGYFGRYSGTKDIHFAPTNAATGKPLQHSDI 323
            Q+ E  WTE +LS   I ITP  V +AL  YW +FA G+ GH K ++  ++   G TEGAL+G+ G YSG K IH  P+NA   +P  H D+
Sbjct:    4 QIHEQCWTEESLSAFGIYITPELVADALKDYWHLFAEGRLGHNKVFVPLDRE--GCTEGALVGFVGDYSGVKSIHSNPSNARYKEPTSHIDV 93
The following BLAST results are available for this feature:
BLAST of Cicer_arietinum_v1_Contig1284 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 4
Match NameE-valueIdentityDescription
C6YBB5_CATRO2.427e-8599.36Putative uncharacterized protein OS=Catharanthus r... [more]
C6YBA9_CATRO2.427e-8599.36Putative uncharacterized protein (Fragment) OS=Cat... [more]
A5WXT3_RHIRD7.410e-3446.41Sus OS=Rhizobium radiobacter GN=sus PE=4 SV=1[more]
Q9WWF1_AGRRH2.648e-1545.65ORF18 protein OS=Agrobacterium rhizogenes GN=ORF18... [more]
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InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSUPERFAMILY51735NAD(P)-binding Rossmann-fold domainscoord: 4..123
score: 2.7

Sequences
The following sequences are available for this feature:

contig sequence

>Cicer_arietinum_v1_Contig1284 ID=Cicer_arietinum_v1_Contig1284; Name=Cicer_arietinum_v1_Contig1284; organism=Cicer arietinum; type=contig; length=516bp
GATTACTATAGGGCACGCGTGGTGTAATACGACTCACTATACTCAAACAA
CTTTGCGAGGTACACTGGACTGAATCTGCACTATCAAACCTCGATATCCA
GATCACACCAGCATTTGTTGACGAAGCTCTCTAGTCCTATTGGGAGGTGT
TTGCCGCAGGAAAAGCCGGACATGTCAAAGCTTACCTAACGTTCAACAAG
AATGTTCCTGGATGGACTGAAGGAGCACTCATTGGCTATTTCGGAAGATA
TTCCGGCACCAAAGACATCCACTTCGCGCCAACCAACGCCGCTACCGGAA
AGCCGCTCCAGCACTCCGATATTTTCCTGCGCGACAAGGTGTCCGGGACG
CTCCTTATGTCGGTAGAGGGCGTGGCAATTTCTAATGGAAGAACGGGTTG
GTTCTCGCTAGCATGCGTAAACCTGCTGTTGCAAGGCAGAGAGGACATCG
ACGTTTTCTTGTTTGGGGCTGGAAAAGTTGCCGAAGCTGTAATTCTCTCA
CTTAACTATGGTGCCA
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