Cicer_arietinum_v1_Contig1333

Contig Overview
NameCicer_arietinum_v1_Contig1333
Unique NameCicer_arietinum_v1_Contig1333
Typecontig
OrganismCicer arietinum (chickpea)
Sequence length564
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
GR915216ESTGR915216:1..364 +Cicer arietinum unigene v1n/a
FE668945ESTFE668945:52..564 +Cicer arietinum unigene v1n/a
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Cicer arietinum unigene v1Cicer arietinum unigene v1contig
Analyses
This contig is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum unigene v12010-12-27
KEGG analysis for Cicer arietinum unigene v12011-01-05
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Trembl2010-12-28
InterProScan analysis for Cicer arietinum unigene v12010-12-29
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
GR915216GR915216Cicer arietinumEST
FE668945FE668945Cicer arietinumEST


Homology
[Close]
BLAST of Cicer_arietinum_v1_Contig1333 vs. TrEMBL
Match: B0BLA7_LOTJA (CM0545.370.nc protein OS=Lotus japonicus GN=CM0545.370.nc PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.330e-51
Identity = 97/107 (90.65%), Postives = 103/107 (96.26%), Query Frame = 1 
Query:  115 MNAFKAYKACAPIAWSPNLYITLVRGIPGTRKQHRRTLEALRLGKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKDEAHQALRPPLIINHQPPSA*GTL 435
            MNAFKAYKAC PIAWSPNLYITLVRGIPGTR+ HRRTLEALRLGKCNRTVMRWNTPTVRGM+QQVKRLVV+ETEEMYKARKQK+EAH+ALRPPL+INHQP SA GTL
Sbjct:    1 MNAFKAYKACVPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLGKCNRTVMRWNTPTVRGMLQQVKRLVVIETEEMYKARKQKEEAHRALRPPLVINHQPSSATGTL 107
[Close]
BLAST of Cicer_arietinum_v1_Contig1333 vs. TrEMBL
Match: C6T0H3_SOYBN (Putative uncharacterized protein OS=Glycine max PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.411e-48
Identity = 90/102 (88.24%), Postives = 99/102 (97.06%), Query Frame = 1 
Query:  115 MNAFKAYKACAPIAWSPNLYITLVRGIPGTRKQHRRTLEALRLGKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKDEAHQALRPPLIINHQPPS 420
            MNAFKAYKAC PIAWSPN+YITLVRGIPGTR+ HRRTLEALRL KCNRTVMRWNTPTVRGM+QQVKRLVV+ETEEMYKARKQK+EAH+ALRPPL+I+H+PPS
Sbjct:    1 MNAFKAYKACVPIAWSPNIYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIETEEMYKARKQKEEAHRALRPPLVISHKPPS 102
[Close]
BLAST of Cicer_arietinum_v1_Contig1333 vs. TrEMBL
Match: D7TFD6_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_87.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00036899001 PE=4 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.617e-44
Identity = 87/104 (83.65%), Postives = 95/104 (91.35%), Query Frame = 1 
Query:  115 MNAFKAYKACAPIAWSPNLYITLVRGIPGTRKQHRRTLEALRLGKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKDEAHQALRPPLIINH-QPPSA 423
            MNAFKA+KAC P+AWSPNLYITLVRGIPGTR+ HRRTLEALRL KCNRTVMRWNTPTVRGM+QQVKRLVV+ETEEMYKARK K+  H+ALRPPL+INH  PP A
Sbjct:    1 MNAFKAFKACVPVAWSPNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIETEEMYKARKLKETNHRALRPPLVINHVLPPPA 104
[Close]
BLAST of Cicer_arietinum_v1_Contig1333 vs. TrEMBL
Match: B9GTU5_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_552748 PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.146e-44
Identity = 86/103 (83.50%), Postives = 94/103 (91.26%), Query Frame = 1 
Query:  115 MNAFKAYKACAPIAWSPNLYITLVRGIPGTRKQHRRTLEALRLGKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKDEAHQALRPPLIINHQPPSA 423
            MNAFKA+KA  PIAWSP+LYITLVRGIPGTR+ HRRTLEALRL KCNRTVMRWNTPTVRGM+QQVKRLVV+ETEEMYKARKQ D  H+A+RPPL+INH P SA
Sbjct:    1 MNAFKAFKAQVPIAWSPHLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIETEEMYKARKQNDVNHRAVRPPLVINHLPASA 103
[Close]
BLAST of Cicer_arietinum_v1_Contig1333 vs. TrEMBL
Match: A5BDK2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_007514 PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.146e-44
Identity = 86/104 (82.69%), Postives = 95/104 (91.35%), Query Frame = 1 
Query:  115 MNAFKAYKACAPIAWSPNLYITLVRGIPGTRKQHRRTLEALRLGKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKDEAHQALRPPLIINH-QPPSA 423
            MNAFKA+KAC P+AWSPNLYITLVRGIPGTR+ HRRTLEALRL KCNRTVMRWNTPTVRGM+QQVKRLVV+ETEEM+KARK K+  H+ALRPPL+INH  PP A
Sbjct:    1 MNAFKAFKACVPVAWSPNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIETEEMHKARKLKETNHRALRPPLVINHVLPPPA 104
[Close]
BLAST of Cicer_arietinum_v1_Contig1333 vs. TrEMBL
Match: B9IAJ3_POPTR (Predicted protein (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_664781 PE=4 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.050e-43
Identity = 85/103 (82.52%), Postives = 92/103 (89.32%), Query Frame = 1 
Query:  115 MNAFKAYKACAPIAWSPNLYITLVRGIPGTRKQHRRTLEALRLGKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKDEAHQALRPPLIINHQPPSA 423
            MNAFKA+KA  PIAWSP+LYITLVRGIPGTR+ HRRTLEALRL KCNRTVMRWNTPT  GM+QQVKRLVV+ETEEMYKARKQ +  HQALRPPL+INH P SA
Sbjct:    1 MNAFKAFKAQVPIAWSPHLYITLVRGIPGTRRLHRRTLEALRLHKCNRTVMRWNTPTAMGMLQQVKRLVVIETEEMYKARKQNEANHQALRPPLVINHLPASA 103
[Close]
BLAST of Cicer_arietinum_v1_Contig1333 vs. TrEMBL
Match: B9SH53_RICCO (Structural constituent of ribosome, putative OS=Ricinus communis GN=RCOM_1116950 PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 9.812e-42
Identity = 82/103 (79.61%), Postives = 90/103 (87.38%), Query Frame = 1 
Query:  115 MNAFKAYKACAPIAWSPNLYITLVRGIPGTRKQHRRTLEALRLGKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKDEAHQALRPPLIINHQPPSA 423
            MNAFKA+KA  PIAWSPNLYITLVRG+PGTRK HRRTLEALRL KCNRTVMRWNTPTVRGM+QQVKRLV +ETEEMYKARK+ +  H+ALR PL+I H P  A
Sbjct:    1 MNAFKAFKAQVPIAWSPNLYITLVRGMPGTRKLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVAIETEEMYKARKENEAKHRALRSPLVIKHLPAEA 103
[Close]
BLAST of Cicer_arietinum_v1_Contig1333 vs. TrEMBL
Match: D7MV04_ARALY (Ribosomal protein L30 family protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_495599 PE=4 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 7.048e-32
Identity = 65/102 (63.73%), Postives = 83/102 (81.37%), Query Frame = 1 
Query:  115 MNAFKAYKACAPIAWSPNLYITLVRGIPGTRKQHRRTLEALRLGKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKDEAHQALRPPLIINHQPPS 420
            M+ F+A+KA  PI WS +LYITLVRG+PGTRK HRRTLEA+ L +C+RTV+  N  ++RGMI QVKR+VVVETEEMY ARK+ +  H+ALRPPL+I+H  P+
Sbjct:    1 MSGFRAFKAQVPIEWSQSLYITLVRGLPGTRKLHRRTLEAMGLRRCHRTVLHSNNSSIRGMINQVKRMVVVETEEMYNARKEAEANHKALRPPLVISHSSPA 102
[Close]
BLAST of Cicer_arietinum_v1_Contig1333 vs. TrEMBL
Match: Q8L908_ARATH (At5g55140 OS=Arabidopsis thaliana GN=At5g55140 PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.205e-32
Identity = 64/102 (62.75%), Postives = 83/102 (81.37%), Query Frame = 1 
Query:  115 MNAFKAYKACAPIAWSPNLYITLVRGIPGTRKQHRRTLEALRLGKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKDEAHQALRPPLIINHQPPS 420
            M+ F+A+KA  PI WS +LYITLVRG+PGTRK HRRTLEA+ L +C+RTV+  N  ++RGMI QVKR+VVVETEEMY ARK+ +  H+ALRPPL+++H  P+
Sbjct:    1 MSGFRAFKAQVPIEWSQSLYITLVRGLPGTRKLHRRTLEAMGLRRCHRTVLHSNNSSIRGMIDQVKRMVVVETEEMYNARKEAEANHKALRPPLVVSHSSPA 102
[Close]
BLAST of Cicer_arietinum_v1_Contig1333 vs. TrEMBL
Match: C5WUY8_SORBI (Putative uncharacterized protein Sb01g002970 OS=Sorghum bicolor GN=Sb01g002970 PE=4 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.568e-31
Identity = 63/100 (63.00%), Postives = 80/100 (80.00%), Query Frame = 1 
Query:  118 NAFKAYKACAPIAWSPNLYITLVRGIPGTRKQHRRTLEALRLGKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKDEAHQALRPPLIINHQPP 417
            +AF A+K+  P+AWSP LYITLVRG+PGTR+ HRRTLEA+RL +C+RTV    TP++ GM+ QVKRLV VETEEMY ARKQ +   +A RPPL+++H PP
Sbjct:    4 SAFNAFKSRVPVAWSPRLYITLVRGLPGTRRLHRRTLEAMRLRRCHRTVEHRTTPSLLGMLTQVKRLVAVETEEMYNARKQAEAERRAPRPPLVVSHHPP 103
[Close]
BLAST of Cicer_arietinum_v1_Contig1333 vs. TAIR peptide
Match: AT5G55140.1 (| Symbols: | ribosomal protein L30 family protein | chr5:22381370-22381787 FORWARD LENGTH=109)

HSP 1 Score: 140.198 bits (352), Expect = 7.286e-34
Identity = 64/102 (62.75%), Postives = 83/102 (81.37%), Query Frame = 1 
Query:  115 MNAFKAYKACAPIAWSPNLYITLVRGIPGTRKQHRRTLEALRLGKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKDEAHQALRPPLIINHQPPS 420
            M+ F+A+KA  PI WS +LYITLVRG+PGTRK HRRTLEA+ L +C+RTV+  N  ++RGMI QVKR+VVVETEEMY ARK+ +  H+ALRPPL+++H  P+
Sbjct:    1 MSGFRAFKAQVPIEWSQSLYITLVRGLPGTRKLHRRTLEAMGLRRCHRTVLHSNNSSIRGMIDQVKRMVVVETEEMYNARKEAEANHKALRPPLVVSHSSPA 102
The following BLAST results are available for this feature:
BLAST of Cicer_arietinum_v1_Contig1333 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
B0BLA7_LOTJA2.330e-5190.65CM0545.370.nc protein OS=Lotus japonicus GN=CM0545... [more]
C6T0H3_SOYBN2.411e-4888.24Putative uncharacterized protein OS=Glycine max PE... [more]
D7TFD6_VITVI1.617e-4483.65Whole genome shotgun sequence of line PN40024, sca... [more]
B9GTU5_POPTR6.146e-4483.50Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
A5BDK2_VITVI6.146e-4482.69Putative uncharacterized protein OS=Vitis vinifera... [more]
B9IAJ3_POPTR3.050e-4382.52Predicted protein (Fragment) OS=Populus trichocarp... [more]
B9SH53_RICCO9.812e-4279.61Structural constituent of ribosome, putative OS=Ri... [more]
D7MV04_ARALY7.048e-3263.73Ribosomal protein L30 family protein OS=Arabidopsi... [more]
Q8L908_ARATH9.205e-3262.75At5g55140 OS=Arabidopsis thaliana GN=At5g55140 PE=... [more]
C5WUY8_SORBI4.568e-3163.00Putative uncharacterized protein Sb01g002970 OS=So... [more]
back to top
BLAST of Cicer_arietinum_v1_Contig1333 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
AT5G55140.17.286e-3462.75| Symbols: | ribosomal protein L30 family protein... [more]
back to top
InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005996Ribosomal protein L30, bacterial-typeTIGRFAMsTIGR01308rpmD_bact: ribosomal protein L30coord: 24..78
score: 7
IPR016082Ribosomal protein L30, ferredoxin-like fold domainGENE3D3.30.1390.20no descriptioncoord: 23..78
score: 1.8
IPR016082Ribosomal protein L30, ferredoxin-like fold domainPFAMPF00327Ribosomal_L30coord: 24..74
score: 8.9
IPR016082Ribosomal protein L30, ferredoxin-like fold domainSUPERFAMILY55129Ribosomal protein L30p/L7ecoord: 21..80
score: 2.2

Sequences
The following sequences are available for this feature:

contig sequence

>Cicer_arietinum_v1_Contig1333 ID=Cicer_arietinum_v1_Contig1333; Name=Cicer_arietinum_v1_Contig1333; organism=Cicer arietinum; type=contig; length=564bp
GATTTCAGCGGCCGCCCGGGCAGGTCTCCTCTCAGTCTCTCACTCTCGCG
GTGCTCTCTGTCTCGTCTCTCTCTTTACCTTCGTATTATCGAATTCTGAC
TTCAAGTTGAAGACATGAATGCGTTCAAGGCATACAAGGCATGTGCCCCA
ATTGCTTGGAGCCCCAATCTCTATATAACTCTGGTGAGGGGCATTCCAGG
GACCAGAAAGCAACATAGGCGCACTTTGGAAGCACTACGCCTGGGCAAAT
GCAACCGAACTGTCATGCGATGGAACACACCTACTGTTAGGGGAATGATC
CAACAGGTCAAGAGGTTAGTTGTTGTTGAGACAGAGGAGATGTACAAGGC
CCGCAAACAGAAAGATGAAGCCCACCAAGCTCTTCGTCCTCCACTGATCA
TAAACCATCAACCTCCTTCTGCTTAGGGTACTTTGTAATGTTTGCTGTGT
TCTAGACATGATCTTGCTACTAAAACTTTCAAATGCCTAAGTTAGAAGCT
ATGATCAGATGGTTAACTTGCTTTGAAGATCATGCTTTTAGTTTTGAATC
TATAATTTTGAAGT
back to top
Annotated Terms
The following terms have been associated with this contig:
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0015934large ribosomal subunit
GO:0005840ribosome
Vocabulary: INTERPRO
TermDefinition
IPR005996Ribosomal_uL30_bac-type
IPR016082Ribosomal_uL30_ferredoxin-like