Cicer_arietinum_v1_Contig1356

Contig Overview
NameCicer_arietinum_v1_Contig1356
Unique NameCicer_arietinum_v1_Contig1356
Typecontig
OrganismCicer arietinum (chickpea)
Sequence length566
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
GR915876ESTGR915876:1..354 +Cicer arietinum unigene v1n/a
GR916539ESTGR916539:2..453 +Cicer arietinum unigene v1n/a
GR915999ESTGR915999:134..553 -Cicer arietinum unigene v1n/a
FE669112ESTFE669112:97..543 -Cicer arietinum unigene v1n/a
FE669616ESTFE669616:10..541 -Cicer arietinum unigene v1n/a
HO064676ESTHO064676:7..571 +Cicer arietinum unigene v1n/a
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Cicer arietinum unigene v1Cicer arietinum unigene v1contig
Analyses
This contig is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum unigene v12010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Trembl2010-12-28
InterProScan analysis for Cicer arietinum unigene v12010-12-29
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
GR915876GR915876Cicer arietinumEST
GR916539GR916539Cicer arietinumEST
GR915999GR915999Cicer arietinumEST
FE669112FE669112Cicer arietinumEST
FE669616FE669616Cicer arietinumEST
HO064676HO064676Cicer arietinumEST


Homology
[Close]
BLAST of Cicer_arietinum_v1_Contig1356 vs. TrEMBL
Match: Q43625_PEA (Putative ORF; conserved in 5' leaders of plant SAMdC OS=Pisum sativum PE=4 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.296e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = -1 
Query:  156 LFYEAPLGYSIEDIRPNGGIKKFRSAAYSNCARKPS 263
            LFYEAPLGYSIEDIRPNGGIKKFRSAAYSNCARKPS
Sbjct:   19 LFYEAPLGYSIEDIRPNGGIKKFRSAAYSNCARKPS 54
[Close]
BLAST of Cicer_arietinum_v1_Contig1356 vs. TrEMBL
Match: Q3ZM65_PHAVU (Putative SAMDC uORF OS=Phaseolus vulgaris PE=4 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.296e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = -1 
Query:  156 LFYEAPLGYSIEDIRPNGGIKKFRSAAYSNCARKPS 263
            LFYEAPLGYSIEDIRPNGGIKKFRSAAYSNCARKPS
Sbjct:   18 LFYEAPLGYSIEDIRPNGGIKKFRSAAYSNCARKPS 53
[Close]
BLAST of Cicer_arietinum_v1_Contig1356 vs. TrEMBL
Match: Q6RUQ6_DAUCA (S-adenosylmethionine decarboxylase uORF OS=Daucus carota PE=4 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.610e-13
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = -1 
Query:  156 LFYEAPLGYSIEDIRPNGGIKKFRSAAYSNCARKPS 263
            LFYEAPLGYSIED+RPNGGIKKFRSAAYSNCARKPS
Sbjct:   18 LFYEAPLGYSIEDVRPNGGIKKFRSAAYSNCARKPS 53
[Close]
BLAST of Cicer_arietinum_v1_Contig1356 vs. TrEMBL
Match: Q39569_CATRO (Catharanthus roseus S-adenosyl-L-methionine decarboxylase proenzyme OS=Catharanthus roseus PE=4 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.610e-13
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = -1 
Query:  156 LFYEAPLGYSIEDIRPNGGIKKFRSAAYSNCARKPS 263
            LFYEAPLGYSIED+RPNGGIKKFRSAAYSNCARKPS
Sbjct:   16 LFYEAPLGYSIEDVRPNGGIKKFRSAAYSNCARKPS 51
[Close]
BLAST of Cicer_arietinum_v1_Contig1356 vs. TrEMBL
Match: Q8LLV4_IPOBA (UORF OS=Ipomoea batatas GN=SAMDC PE=4 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.632e-12
Identity = 33/36 (91.67%), Postives = 36/36 (100.00%), Query Frame = -1 
Query:  156 LFYEAPLGYSIEDIRPNGGIKKFRSAAYSNCARKPS 263
            LFYEAPLGY++ED+RPNGGIKKFRSAAYSNCARKPS
Sbjct:   16 LFYEAPLGYTVEDVRPNGGIKKFRSAAYSNCARKPS 51
[Close]
BLAST of Cicer_arietinum_v1_Contig1356 vs. TrEMBL
Match: Q6RUQ4_DAUCA (S-adenosylmethionine decarboxylase uORF OS=Daucus carota PE=4 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.632e-12
Identity = 34/35 (97.14%), Postives = 35/35 (100.00%), Query Frame = -1 
Query:  156 FYEAPLGYSIEDIRPNGGIKKFRSAAYSNCARKPS 260
            FYEAPLGYSIED+RPNGGIKKFRSAAYSNCARKPS
Sbjct:   19 FYEAPLGYSIEDVRPNGGIKKFRSAAYSNCARKPS 53
[Close]
BLAST of Cicer_arietinum_v1_Contig1356 vs. TrEMBL
Match: Q6KC47_PRUPE (S-adenosylmethionine decarboxylase (Fragment) OS=Prunus persica GN=samdc PE=4 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.203e-12
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = -1 
Query:  156 LFYEAPLGYSIEDIRPNGGIKKFRSAAYSNCARKPS 263
            LFYEAPLGYSIED+RP+GGIKKFRSAAYSNC RKPS
Sbjct:   16 LFYEAPLGYSIEDVRPHGGIKKFRSAAYSNCVRKPS 51
[Close]
BLAST of Cicer_arietinum_v1_Contig1356 vs. TrEMBL
Match: A7Y7H5_PRUDU (Putative S-adenosylmethionine decarboxylase (Fragment) OS=Prunus dulcis PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.203e-12
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = -1 
Query:  156 LFYEAPLGYSIEDIRPNGGIKKFRSAAYSNCARKPS 263
            LFYEAPLGYSIED+RP+GGIKKFRSAAYSNC RKPS
Sbjct:   21 LFYEAPLGYSIEDVRPHGGIKKFRSAAYSNCVRKPS 56
[Close]
BLAST of Cicer_arietinum_v1_Contig1356 vs. TrEMBL
Match: Q84LA3_NARPS (S-adenosylmethionine decarboxylase leader OS=Narcissus pseudonarcissus GN=SAMdc PE=4 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.101e-12
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = -1 
Query:  156 YEAPLGYSIEDIRPNGGIKKFRSAAYSNCARKPS 257
            YEAPLGYSIED+RPNGGIKKFRSAAYSNCARKPS
Sbjct:   18 YEAPLGYSIEDVRPNGGIKKFRSAAYSNCARKPS 51
[Close]
BLAST of Cicer_arietinum_v1_Contig1356 vs. TrEMBL
Match: Q1KUN3_9ROSI (Putative uncharacterized protein OS=Cleome spinosa PE=4 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.058e-11
Identity = 32/36 (88.89%), Postives = 36/36 (100.00%), Query Frame = -1 
Query:  156 LFYEAPLGYSIEDIRPNGGIKKFRSAAYSNCARKPS 263
            LFYEAPLGYSIED+RP+GGIKKFRSAAYSNCA++PS
Sbjct:   43 LFYEAPLGYSIEDVRPHGGIKKFRSAAYSNCAKRPS 78
[Close]
BLAST of Cicer_arietinum_v1_Contig1356 vs. TAIR peptide
Match: AT3G02468.1 (| Symbols: CPuORF9 | conserved peptide upstream open reading frame 9 | chr3:509815-510068 FORWARD LENGTH=52)

HSP 1 Score: 70.4774 bits (171), Expect = 7.090e-13
Identity = 29/36 (80.56%), Postives = 35/36 (97.22%), Query Frame = -1 
Query:  156 LFYEAPLGYSIEDIRPNGGIKKFRSAAYSNCARKPS 263
            LFYEAPLGYSIED+RPNGGIKKF+S+ YSNC+++PS
Sbjct:   17 LFYEAPLGYSIEDVRPNGGIKKFKSSVYSNCSKRPS 52
[Close]
BLAST of Cicer_arietinum_v1_Contig1356 vs. TAIR peptide
Match: AT5G15948.1 (| Symbols: CPuORF10 | conserved peptide upstream open reading frame 10 | chr5:5206432-5206587 FORWARD LENGTH=51)

HSP 1 Score: 65.0846 bits (157), Expect = 2.979e-11
Identity = 28/36 (77.78%), Postives = 33/36 (91.67%), Query Frame = -1 
Query:  156 LFYEAPLGYSIEDIRPNGGIKKFRSAAYSNCARKPS 263
            L YEAPLGYSIED+RP GGIKKF+S+ YSNCA++PS
Sbjct:   16 LCYEAPLGYSIEDVRPFGGIKKFKSSVYSNCAKRPS 51
[Close]
BLAST of Cicer_arietinum_v1_Contig1356 vs. TAIR peptide
Match: AT3G25572.1 (| Symbols: CPuORF11 | conserved peptide upstream open reading frame 11 | chr3:9288595-9288871 REVERSE LENGTH=54)

HSP 1 Score: 65.0846 bits (157), Expect = 2.979e-11
Identity = 30/36 (83.33%), Postives = 32/36 (88.89%), Query Frame = -1 
Query:  156 LFYEAPLGYSIEDIRPNGGIKKFRSAAYSNCARKPS 263
            LF+EAPL YSIED+RPNGGIKKFRSAAYSN   KPS
Sbjct:   19 LFFEAPLRYSIEDVRPNGGIKKFRSAAYSNITGKPS 54
The following BLAST results are available for this feature:
BLAST of Cicer_arietinum_v1_Contig1356 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
Q43625_PEA4.296e-13100.00Putative ORF; conserved in 5' leaders of plant SAM... [more]
Q3ZM65_PHAVU4.296e-13100.00Putative SAMDC uORF OS=Phaseolus vulgaris PE=4 SV=... [more]
Q6RUQ6_DAUCA5.610e-1397.22S-adenosylmethionine decarboxylase uORF OS=Daucus ... [more]
Q39569_CATRO5.610e-1397.22Catharanthus roseus S-adenosyl-L-methionine decarb... [more]
Q8LLV4_IPOBA1.632e-1291.67UORF OS=Ipomoea batatas GN=SAMDC PE=4 SV=1[more]
Q6RUQ4_DAUCA1.632e-1297.14S-adenosylmethionine decarboxylase uORF OS=Daucus ... [more]
Q6KC47_PRUPE6.203e-1291.67S-adenosylmethionine decarboxylase (Fragment) OS=P... [more]
A7Y7H5_PRUDU6.203e-1291.67Putative S-adenosylmethionine decarboxylase (Fragm... [more]
Q84LA3_NARPS8.101e-1297.06S-adenosylmethionine decarboxylase leader OS=Narci... [more]
Q1KUN3_9ROSI1.058e-1188.89Putative uncharacterized protein OS=Cleome spinosa... [more]
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BLAST of Cicer_arietinum_v1_Contig1356 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 3
Match NameE-valueIdentityDescription
AT3G02468.17.090e-1380.56| Symbols: CPuORF9 | conserved peptide upstream op... [more]
AT5G15948.12.979e-1177.78| Symbols: CPuORF10 | conserved peptide upstream o... [more]
AT3G25572.12.979e-1183.33| Symbols: CPuORF11 | conserved peptide upstream o... [more]
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InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 3..20
score
NoneNo IPR availableSEGsegsegcoord: 24..37
score
NoneNo IPR availableSEGsegsegcoord: 45..60
score
NoneNo IPR availableSEGsegsegcoord: 11..20
score
NoneNo IPR availableSEGsegsegcoord: 7..12
score: NAcoord: 17..54
score
NoneNo IPR availableSEGsegsegcoord: 14..31
score
IPR012511S-adenosyl-l-methionine decarboxylase leader peptidePFAMPF08132AdoMetDC_leadercoord: 12..67
score: 4.4

Sequences
The following sequences are available for this feature:

contig sequence

>Cicer_arietinum_v1_Contig1356 ID=Cicer_arietinum_v1_Contig1356; Name=Cicer_arietinum_v1_Contig1356; organism=Cicer arietinum; type=contig; length=566bp
GATTTCGAGCGGCCGCCCGGGCAGGTACAATCGCAAAGAGAGGGTTTGGA
AAGATGTTGTTTGAAGGAGAGTAGTGAATAAAACTAGACAAAAACTAAAA
AAGCTAATAAAAAAATGCTTGCATGCACGGGACGGAATATCAGTAGGGAA
TATCAGGATGGCTTGCGAGCACAGTTGGAGTAAGCAGCTGATCTGAATTT
CTTGATTCCACCGTTAGGACGAATGTCTTCAATGCTGTATCCGAGGGGGG
CTTCGTAGAATAATGATGATGATGAATTACTACTACTACTACTAGACTTC
TTTTTACCTCCTTTAGACTCCATTAGCTCATTCAGTCCTGATTTGATAAG
ATCAAATTATAAAATGCCGCAGCTTTCAATACCTTCAACCCACCGAGATC
AAATCGAATGAAATAGATACGAGTGGGAACTTGGGAGAAGGGAAAGCGCG
GAGAGAAACGAAACCCTAGAAAAGAACGATCTAAAGTTAAAGATTATAAT
AAGAAAGAAAAGATCGAAATCACAGGGCTGCGCTGCGTTGTTTGCGTTTC
CCCGCGTACCTGCCCG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR012511AdoMetDC_leader