Cicer_arietinum_v1_Contig1364

Contig Overview
NameCicer_arietinum_v1_Contig1364
Unique NameCicer_arietinum_v1_Contig1364
Typecontig
OrganismCicer arietinum (chickpea)
Sequence length582
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
GR402852ESTGR402852:87..311 +
GR421114ESTGR421114:1..556 +
GR405610ESTGR405610:1..564 +
GR401897ESTGR401897:73..578 +
GR405611ESTGR405611:394..564 -
GR404562ESTGR404562:256..578 -
GR409039ESTGR409039:440..582 +
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Cicer arietinum unigene v1Cicer arietinum unigene v1contig
Analyses
This contig is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum unigene v12010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Trembl2010-12-28
InterProScan analysis for Cicer arietinum unigene v12010-12-29
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
GR402852GR402852Cicer arietinumEST
GR421114GR421114Cicer arietinumEST
GR405610GR405610Cicer arietinumEST
GR401897GR401897Cicer arietinumEST
GR405611GR405611Cicer arietinumEST
GR404562GR404562Cicer arietinumEST
GR409039GR409039Cicer arietinumEST


Homology
BLAST of Cicer_arietinum_v1_Contig1364 vs. TrEMBL
Match: C6SVF0_SOYBN (Putative uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.958e-11
Identity = 42/66 (63.64%), Postives = 44/66 (66.67%), Query Frame = 2
Query:  143 APKPATTNA--QPEGQTVXXXXXXXXXXXXX-IDPSKPAGINSNSIDGLNTGNFITDRPSTKVHAA 331
            APKPAT NA  QPE Q V              IDP+K AGINS+S DG NTGNFITDRPSTKVHAA
Sbjct:   25 APKPATNNAPAQPEVQAVNNVPPPKASPPTKTIDPNKAAGINSHSTDGQNTGNFITDRPSTKVHAA 90          
BLAST of Cicer_arietinum_v1_Contig1364 vs. TrEMBL
Match: C6SVG4_SOYBN (Putative uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.657e-10
Identity = 41/66 (62.12%), Postives = 43/66 (65.15%), Query Frame = 2
Query:  143 APKPATTNA--QPEGQTVXXXXXXXXXXXXX-IDPSKPAGINSNSIDGLNTGNFITDRPSTKVHAA 331
            A KPAT NA  QPE Q V              IDP+K AGINS+S DG NTGNFITDRPSTKVHAA
Sbjct:   25 AAKPATNNAPAQPEVQAVNNAPPSKASPPTKTIDPNKAAGINSHSTDGRNTGNFITDRPSTKVHAA 90          
BLAST of Cicer_arietinum_v1_Contig1364 vs. TrEMBL
Match: D7SIL0_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_0.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00008116001 PE=4 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 1.313e-7
Identity = 35/71 (49.30%), Postives = 40/71 (56.34%), Query Frame = 2
Query:  140 EAPKPATTNAQ-PEGQTVXXXXXXXXXXXXXIDPSKPAGINSNSI------DGLNTGNFITDRPSTKVHAA 331
            EAPKPAT NA+ P+ Q               I+   PAG+  N+       DG NTGNFITDRPSTKVHAA
Sbjct:   51 EAPKPATNNAEAPQNQGQVGIAPPAGAPPAVINKQIPAGVQGNTTNNYFRADGQNTGNFITDRPSTKVHAA 121          
BLAST of Cicer_arietinum_v1_Contig1364 vs. TrEMBL
Match: D7KWZ4_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_476049 PE=4 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 4.990e-7
Identity = 36/73 (49.32%), Postives = 42/73 (57.53%), Query Frame = 2
Query:  140 EAPKPATTNAQP-EGQTVXXXXXXXXXXXXXIDPSK--PAGINSNSI------DGLNTGNFITDRPSTKVHAA 331
            EAPKP+T N  P E Q+              +D  K  PAG+NSNS       +G NTGNFITDRPSTKVH+A
Sbjct:   22 EAPKPSTVNKAPAETQSSAPAPPLQTAAPKAVDSIKQVPAGLNSNSTNNYMRAEGQNTGNFITDRPSTKVHSA 94          
BLAST of Cicer_arietinum_v1_Contig1364 vs. TrEMBL
Match: B9REC6_RICCO (SP1L, putative OS=Ricinus communis GN=RCOM_1620370 PE=4 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 8.512e-7
Identity = 39/76 (51.32%), Postives = 42/76 (55.26%), Query Frame = 2
Query:  140 EAPKPATTNAQP---EGQTVXXXXXXXXXXXXX-IDPSK--PAGINSNSI------DGLNTGNFITDRPSTKVHAA 331
            EAPKP   NAQP   + Q V              +D SK  PAGINS S       DG NTGNF+TDRPSTKVHAA
Sbjct:   22 EAPKPTRKNAQPAPNDAQVVNDLPPSKPAVASQPVDISKQVPAGINSTSTNNYMRADGQNTGNFLTDRPSTKVHAA 97          
BLAST of Cicer_arietinum_v1_Contig1364 vs. TAIR peptide
Match: AT1G26355.1 (| Symbols: SP1L1 | SPIRAL1-like1 | chr1:9117950-9118611 REVERSE LENGTH=113)

HSP 1 Score: 53.1434 bits (126), Expect = 1.217e-7
Identity = 35/75 (46.67%), Postives = 42/75 (56.00%), Query Frame = 2
Query:  140 EAPKPATTNAQ-PEGQT--VXXXXXXXXXXXXXIDPSK--PAGINSNSI------DGLNTGNFITDRPSTKVHAA 331
            EAPKPA  NA  P  +T  +             ++ +K  PAGIN +S       DG NTGNF+TDRPSTKVHAA
Sbjct:   22 EAPKPAINNAPAPSSETLPISADPSPKHVAAQTVNVTKQIPAGINKSSTNNYIRADGQNTGNFLTDRPSTKVHAA 96          
BLAST of Cicer_arietinum_v1_Contig1364 vs. TAIR peptide
Match: AT1G69230.2 (| Symbols: SP1L2 | SPIRAL1-like2 | chr1:26026543-26027085 REVERSE LENGTH=110)

HSP 1 Score: 52.373 bits (124), Expect = 2.076e-7
Identity = 34/73 (46.58%), Postives = 40/73 (54.79%), Query Frame = 2
Query:  140 EAPKPATTNAQP-EGQTVXXXXXXXXXXXXXIDPSK--PAGINSNSI------DGLNTGNFITDRPSTKVHAA 331
            EAPK A  N  P E ++              +D  K  PAG+NSNS       +G NTGNFITDRPSTKVH+A
Sbjct:   22 EAPKLAAVNKTPAETESSAHAPPTQAAAANAVDSIKQVPAGLNSNSANNYMRAEGQNTGNFITDRPSTKVHSA 94          
BLAST of Cicer_arietinum_v1_Contig1364 vs. TAIR peptide
Match: AT1G69230.1 (| Symbols: SP1L2 | SPIRAL1-like2 | chr1:26026543-26027085 REVERSE LENGTH=110)

HSP 1 Score: 52.373 bits (124), Expect = 2.076e-7
Identity = 34/73 (46.58%), Postives = 40/73 (54.79%), Query Frame = 2
Query:  140 EAPKPATTNAQP-EGQTVXXXXXXXXXXXXXIDPSK--PAGINSNSI------DGLNTGNFITDRPSTKVHAA 331
            EAPK A  N  P E ++              +D  K  PAG+NSNS       +G NTGNFITDRPSTKVH+A
Sbjct:   22 EAPKLAAVNKTPAETESSAHAPPTQAAAANAVDSIKQVPAGLNSNSANNYMRAEGQNTGNFITDRPSTKVHSA 94          
The following BLAST results are available for this feature:
BLAST of Cicer_arietinum_v1_Contig1364 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 5
Match NameE-valueIdentityDescription
C6SVF0_SOYBN1.958e-1163.64Putative uncharacterized protein OS=Glycine max PE... [more]
C6SVG4_SOYBN1.657e-1062.12Putative uncharacterized protein OS=Glycine max PE... [more]
D7SIL0_VITVI1.313e-749.30Whole genome shotgun sequence of line PN40024, sca... [more]
D7KWZ4_ARALY4.990e-749.32Putative uncharacterized protein OS=Arabidopsis ly... [more]
B9REC6_RICCO8.512e-751.32SP1L, putative OS=Ricinus communis GN=RCOM_1620370... [more]
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BLAST of Cicer_arietinum_v1_Contig1364 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 3
Match NameE-valueIdentityDescription
AT1G26355.11.217e-746.67| Symbols: SP1L1 | SPIRAL1-like1 | chr1:9117950-91... [more]
AT1G69230.22.076e-746.58| Symbols: SP1L2 | SPIRAL1-like2 | chr1:26026543-2... [more]
AT1G69230.12.076e-746.58| Symbols: SP1L2 | SPIRAL1-like2 | chr1:26026543-2... [more]
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InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 10..31
score: NAcoord: 49..61
score: NAcoord: 96..110
score
NoneNo IPR availableSEGsegsegcoord: 20..44
score

Sequences
The following sequences are available for this feature:

contig sequence

>Cicer_arietinum_v1_Contig1364 ID=Cicer_arietinum_v1_Contig1364; Name=Cicer_arietinum_v1_Contig1364; organism=Cicer arietinum; type=contig; length=582bp
TTCTTGGCGTTTTCCAGATCTGCCCACAGCCACCTATAGAGACTAGAATT
TACTTGTCAGAAAGCAGTTGAACAGCATGGGACGTGGAAATAGCAGTGGT
GGTGGTCAAAGTTCATTGGGTTATCTTTTTGGCAGTGGAGAGGCCCCAAA
ACCAGCAACAACTAATGCACAACCTGAAGGGCAGACTGTAAACAATGCAC
CCCCTCCAAAACCAGCTGCTCCTAATGCAATAGACCCAAGCAAGCCTGCT
GGTATCAACAGTAATTCTATTGATGGCCTGAACACTGGCAACTTCATCAC
GGACCGACCCTCAACCAAGGTTCATGCTGCCCCTGGTGGCGGCTCTTCTT
TGGGTTATCTCTTTGGTGGGCCTGGGGATGGAAAATGATACCTCTTTTGC
AAAATCTTTCGCCTGATAATGAAGTTGTGCGAACAAAATGAATGATGTAT
TATAGGTTATGGTTGTTGGGATAAATTGTTCGAGAATGTTATATTTTAGA
TGTGCTTAACATCTATTATAGACTTGTGTTTGTCAAACAAATTTCTATTT
TCAAGTGCACATTTGCTTCTTGTTCTGTAATA
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