Cicer_arietinum_v1_Contig1425

Contig Overview
NameCicer_arietinum_v1_Contig1425
Unique NameCicer_arietinum_v1_Contig1425
Typecontig
OrganismCicer arietinum (chickpea)
Sequence length829
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
GR409612ESTGR409612:1..334 +Cicer arietinum unigene v1n/a
GR409700ESTGR409700:1..400 +Cicer arietinum unigene v1n/a
GR409346ESTGR409346:1..711 +Cicer arietinum unigene v1n/a
GR409300ESTGR409300:1..698 +Cicer arietinum unigene v1n/a
DY475235ESTDY475235:467..721 +Cicer arietinum unigene v1n/a
GR409688ESTGR409688:69..780 -Cicer arietinum unigene v1n/a
FE670202ESTFE670202:377..799 -Cicer arietinum unigene v1n/a
FE670023ESTFE670023:327..829 -Cicer arietinum unigene v1n/a
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Cicer arietinum unigene v1Cicer arietinum unigene v1contig
Analyses
This contig is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum unigene v12010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Trembl2010-12-28
InterProScan analysis for Cicer arietinum unigene v12010-12-29
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
GR409612GR409612Cicer arietinumEST
GR409700GR409700Cicer arietinumEST
GR409346GR409346Cicer arietinumEST
GR409300GR409300Cicer arietinumEST
DY475235DY475235Cicer arietinumEST
GR409688GR409688Cicer arietinumEST
FE670202FE670202Cicer arietinumEST
FE670023FE670023Cicer arietinumEST


Homology
[Close]
BLAST of Cicer_arietinum_v1_Contig1425 vs. TrEMBL
Match: C6SVJ9_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.172e-21
Identity = 66/154 (42.86%), Postives = 70/154 (45.45%), Query Frame = 2 
Query:  119 VSTLSGIDAITMDMKEKKLXXXXXXXXXXXXXKLRKYWQADLISVGPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPDP----VSEMVKAYRAYNPHMTTYYYVQSMEENPNACVIC 568
            VSTLSGIDAI+MDMKEKKL             KLRKYWQ D++SVGPA                                                                AP P    V E+VKAYRAYNPHMTTYYYVQSMEENPNACVIC
Sbjct:   23 VSTLSGIDAISMDMKEKKLTVIGTVDPVNVVSKLRKYWQTDIVSVGPAKEPEKKEEPKKEEPKKEEEKKEEPKKEGEAKKEEEKKEEPKKEEEKKEETKKEEEKKEEEKKKEAPPPPPDPVLELVKAYRAYNPHMTTYYYVQSMEENPNACVIC 176
[Close]
BLAST of Cicer_arietinum_v1_Contig1425 vs. TrEMBL
Match: C6T3P8_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 4.465e-13
Identity = 33/37 (89.19%), Postives = 36/37 (97.30%), Query Frame = 2 
Query:  458 PDPVSEMVKAYRAYNPHMTTYYYVQSMEENPNACVIC 568
            PDPV E+VKAYRAYNPH+TTYYYVQSMEENPNACV+C
Sbjct:  134 PDPVLELVKAYRAYNPHVTTYYYVQSMEENPNACVVC 170

HSP 2 Score: 62.3882 bits (150), Expect = 5.648e-8
Identity = 31/48 (64.58%), Postives = 34/48 (70.83%), Query Frame = 2 
Query:  119 VSTLSGIDAITMDMKEKKLXXXXXXXXXXXXXKLRKYWQADLISVGPA 262
            VSTLSGIDAI+MDMKEKKL             KLRKYWQ D++SVGPA
Sbjct:   23 VSTLSGIDAISMDMKEKKLTVIGTVDPVNVVSKLRKYWQTDILSVGPA 70
[Close]
BLAST of Cicer_arietinum_v1_Contig1425 vs. TrEMBL
Match: B9GQD1_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_710061 PE=4 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 6.447e-12
Identity = 32/37 (86.49%), Postives = 34/37 (91.89%), Query Frame = 2 
Query:  458 PDPVSEMVKAYRAYNPHMTTYYYVQSMEENPNACVIC 568
            PDPV E+VKAYRAYNP MTTYYY QS+EENPNACVIC
Sbjct:   99 PDPVMELVKAYRAYNPQMTTYYYAQSIEENPNACVIC 135
[Close]
BLAST of Cicer_arietinum_v1_Contig1425 vs. TrEMBL
Match: D7UCD8_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_46.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00026961001 PE=4 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 8.421e-12
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 2 
Query:  461 DPVSEMVKAYRAYNPHMTTYYYVQSMEENPNACVIC 568
            DPV E+VKAYRAYNPHMTT+YYV SMEENPNACVIC
Sbjct:  129 DPVMELVKAYRAYNPHMTTHYYVHSMEENPNACVIC 164
[Close]
BLAST of Cicer_arietinum_v1_Contig1425 vs. TrEMBL
Match: B9I8P6_POPTR (Predicted protein (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_244676 PE=4 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 8.421e-12
Identity = 33/36 (91.67%), Postives = 34/36 (94.44%), Query Frame = 2 
Query:  458 PDPVSEMVKAYRAYNPHMTTYYYVQSMEENPNACVI 565
            PDPV E+VKAYRAYNP MTTYYYVQSMEENPNACVI
Sbjct:  106 PDPVMELVKAYRAYNPQMTTYYYVQSMEENPNACVI 141
[Close]
BLAST of Cicer_arietinum_v1_Contig1425 vs. TrEMBL
Match: Q9LMN0_ARATH (F22L4.5 protein OS=Arabidopsis thaliana GN=F22L4.5 PE=4 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 5.458e-11
Identity = 30/37 (81.08%), Postives = 34/37 (91.89%), Query Frame = 2 
Query:  458 PDPVSEMVKAYRAYNPHMTTYYYVQSMEENPNACVIC 568
            PD V E+VKAY+AYNPH+TTYYY QS+EENPNACVIC
Sbjct:  167 PDHVLELVKAYKAYNPHLTTYYYAQSIEENPNACVIC 203
[Close]
BLAST of Cicer_arietinum_v1_Contig1425 vs. TrEMBL
Match: Q7DLT7_ARATH (Putative uncharacterized protein (Fragment) OS=Arabidopsis thaliana PE=4 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 5.458e-11
Identity = 30/37 (81.08%), Postives = 34/37 (91.89%), Query Frame = 2 
Query:  458 PDPVSEMVKAYRAYNPHMTTYYYVQSMEENPNACVIC 568
            PD V E+VKAY+AYNPH+TTYYY QS+EENPNACVIC
Sbjct:   65 PDHVLELVKAYKAYNPHLTTYYYAQSIEENPNACVIC 101
[Close]
BLAST of Cicer_arietinum_v1_Contig1425 vs. TrEMBL
Match: O03982_ARATH (Putative uncharacterized protein OS=Arabidopsis thaliana GN=At1g01490 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 5.458e-11
Identity = 30/37 (81.08%), Postives = 34/37 (91.89%), Query Frame = 2 
Query:  458 PDPVSEMVKAYRAYNPHMTTYYYVQSMEENPNACVIC 568
            PD V E+VKAY+AYNPH+TTYYY QS+EENPNACVIC
Sbjct:  141 PDHVLELVKAYKAYNPHLTTYYYAQSIEENPNACVIC 177
[Close]
BLAST of Cicer_arietinum_v1_Contig1425 vs. TrEMBL
Match: D7KQ67_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_887301 PE=4 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 5.458e-11
Identity = 30/37 (81.08%), Postives = 34/37 (91.89%), Query Frame = 2 
Query:  458 PDPVSEMVKAYRAYNPHMTTYYYVQSMEENPNACVIC 568
            PD V E+VKAY+AYNPH+TTYYY QS+EENPNACVIC
Sbjct:  141 PDHVLELVKAYKAYNPHLTTYYYAQSIEENPNACVIC 177
[Close]
BLAST of Cicer_arietinum_v1_Contig1425 vs. TrEMBL
Match: C6TB20_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 7.128e-11
Identity = 31/37 (83.78%), Postives = 33/37 (89.19%), Query Frame = 2 
Query:  458 PDPVSEMVKAYRAYNPHMTTYYYVQSMEENPNACVIC 568
            PDPV E VKAYRAYNP+MTT+YY  SMEENPNACVIC
Sbjct:  117 PDPVLEWVKAYRAYNPYMTTHYYAPSMEENPNACVIC 153
[Close]
BLAST of Cicer_arietinum_v1_Contig1425 vs. TAIR peptide
Match: AT1G01490.2 (| Symbols: | Heavy metal transport/detoxification superfamily protein | chr1:180401-182066 REVERSE LENGTH=177)

HSP 1 Score: 72.4034 bits (176), Expect = 3.457e-13
Identity = 30/37 (81.08%), Postives = 34/37 (91.89%), Query Frame = 2 
Query:  458 PDPVSEMVKAYRAYNPHMTTYYYVQSMEENPNACVIC 568
            PD V E+VKAY+AYNPH+TTYYY QS+EENPNACVIC
Sbjct:  141 PDHVLELVKAYKAYNPHLTTYYYAQSIEENPNACVIC 177
[Close]
BLAST of Cicer_arietinum_v1_Contig1425 vs. TAIR peptide
Match: AT1G01490.1 (| Symbols: | Heavy metal transport/detoxification superfamily protein | chr1:180401-182066 REVERSE LENGTH=177)

HSP 1 Score: 72.4034 bits (176), Expect = 3.457e-13
Identity = 30/37 (81.08%), Postives = 34/37 (91.89%), Query Frame = 2 
Query:  458 PDPVSEMVKAYRAYNPHMTTYYYVQSMEENPNACVIC 568
            PD V E+VKAY+AYNPH+TTYYY QS+EENPNACVIC
Sbjct:  141 PDHVLELVKAYKAYNPHLTTYYYAQSIEENPNACVIC 177
The following BLAST results are available for this feature:
BLAST of Cicer_arietinum_v1_Contig1425 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
C6SVJ9_SOYBN1.172e-2142.86Putative uncharacterized protein OS=Glycine max PE... [more]
C6T3P8_SOYBN4.465e-1389.19Putative uncharacterized protein OS=Glycine max PE... [more]
B9GQD1_POPTR6.447e-1286.49Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
D7UCD8_VITVI8.421e-1288.89Whole genome shotgun sequence of line PN40024, sca... [more]
B9I8P6_POPTR8.421e-1291.67Predicted protein (Fragment) OS=Populus trichocarp... [more]
Q9LMN0_ARATH5.458e-1181.08F22L4.5 protein OS=Arabidopsis thaliana GN=F22L4.5... [more]
Q7DLT7_ARATH5.458e-1181.08Putative uncharacterized protein (Fragment) OS=Ara... [more]
O03982_ARATH5.458e-1181.08Putative uncharacterized protein OS=Arabidopsis th... [more]
D7KQ67_ARALY5.458e-1181.08Putative uncharacterized protein OS=Arabidopsis ly... [more]
C6TB20_SOYBN7.128e-1183.78Putative uncharacterized protein OS=Glycine max PE... [more]
back to top
BLAST of Cicer_arietinum_v1_Contig1425 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 2
Match NameE-valueIdentityDescription
AT1G01490.23.457e-1381.08| Symbols: | Heavy metal transport/detoxification... [more]
AT1G01490.13.457e-1381.08| Symbols: | Heavy metal transport/detoxification... [more]
back to top
InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 14..77
score
NoneNo IPR availablePANTHERPTHR22814COPPER TRANSPORT PROTEIN ATOX1-RELATEDcoord: 26..189
score: 2.4
NoneNo IPR availablePANTHERPTHR22814:SF5UNCHARACTERIZEDcoord: 26..189
score: 2.4
NoneNo IPR availableSEGsegsegcoord: 1..12
score: NAcoord: 19..39
score: NAcoord: 59..71
score: NAcoord: 88..151
score
NoneNo IPR availableSEGsegsegcoord: 2..67
score
NoneNo IPR availableSEGsegsegcoord: 8..77
score: NAcoord: 89..104
score
NoneNo IPR availableSEGsegsegcoord: 6..69
score
NoneNo IPR availableSEGsegsegcoord: 9..77
score
IPR006121Heavy metal transport/detoxification proteinPFAMPF00403HMAcoord: 26..74
score: 2.7

Sequences
The following sequences are available for this feature:

contig sequence

>Cicer_arietinum_v1_Contig1425 ID=Cicer_arietinum_v1_Contig1425; Name=Cicer_arietinum_v1_Contig1425; organism=Cicer arietinum; type=contig; length=829bp
CCTTCTAATTTCTCTGTCTCTGATCTGCTTACATCTAAATAAGGACTGTA
AAATGAAGAAGTTTGTGCTGAAGTTAGATTTGGCAGATGATAAGGCGAAG
CAGAAGGCCTTGAAGGCAGTCTCAACACTTTCAGGGATTGATGCTATCAC
TATGGACATGAAGGAGAAGAAATTAACTGTGGTAGGAACTGTTGATCCAG
TAAGTGTAGTGAGCAAACTTAGAAAATATTGGCAAGCAGATTTAATCTCA
GTAGGACCAGCAAAGGAGCCAGAGAAGAAAGAGGAGCCAAAGAAAGAAGA
ACCAAAAAAGGAAGAAGAGAAGAAAGAAGAGCCAAAAAAGGAGGAAGAGA
AGAAAGAAGAGGGAAAGAAGGAAGAACCAAAGAAAGAAGAAGGGAAGAAG
GAAGAAGAGAAGAAAGAAGAAGAGAAGAAAGAAGAGGAGAAGAAGAAAGA
GCCAGCCCCTGACCCTGTTTCAGAGATGGTCAAGGCTTATAGAGCTTATA
ATCCTCACATGACCACATATTACTATGTTCAAAGTATGGAAGAGAATCCC
AATGCTTGTGTAATTTGTTAAATAGCAAGGTTGGGGAATGTGATGTGTAA
AACTTATTCGACTTGTAATGGAATCAATTCTCTATTATGAAGAGAGTAAC
CACCAACAAGAGAGAAACTCTCTTTGTATATATATTTTGGTCATGGCCCC
TTCTTAAGTTGTCTTGGGGCTACCTATTAGCAATGTGTAGAAACAAGGAA
TAAAATTTTGGGGTATCGATTTTGTTTTGCAATTATAATGTAAGTCATAC
TATTTTCCCTTTTTAGAAAAAAACCTGCA
back to top
Annotated Terms
The following terms have been associated with this contig:
Vocabulary: Biological Process
TermDefinition
GO:0030001metal ion transport
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
Vocabulary: INTERPRO
TermDefinition
IPR006121HMA_dom