Cicer_arietinum_v1_Contig1434

Contig Overview


Name	Cicer_arietinum_v1_Contig1434
Unique Name	Cicer_arietinum_v1_Contig1434
Type	contig
Organism	Cicer arietinum (chickpea)
Sequence length	578

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
GR409500	EST	GR409500:1..539 +	Cicer arietinum unigene v1	n/a
GR392113	EST	GR392113:223..578 +	Cicer arietinum unigene v1	n/a

Unigenes

This contig is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	contig

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide	2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Relationships

The following EST feature(s) are a part of this contig:


Feature Name	Unique Name	Species	Type
GR409500	GR409500	Cicer arietinum	EST
GR392113	GR392113	Cicer arietinum	EST

Homology

[Close]

BLAST of Cicer_arietinum_v1_Contig1434 vs. TrEMBL
Match: C6T3S2_SOYBN (Putative uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.185e-39
Identity = 68/99 (68.69%), Postives = 79/99 (79.80%), Query Frame = -3

Query:  229 MDKYFSFAYRGDPGVPHADPHRFVNIWIGSLAFTAWDIINPYMWHIGSFTFNWHDRVMLFEQYHWKRAMKKNQSYEFMWNKTWDKAHRKSYYFNWPGYF 525
            M+KYF  AYRGDPGVPH+DP RFVNIW+GS AF      NPYMW + +  FNW+D+ ML+EQYHWK+A KKNQ YEFMWNKTWDK HR+ YY+NWP YF
Sbjct:    1 MEKYFGNAYRGDPGVPHSDPDRFVNIWVGSAAFAVLTYFNPYMWQLSN-QFNWYDKAMLYEQYHWKQARKKNQPYEFMWNKTWDKNHREHYYYNWPIYF 98

[Close]

BLAST of Cicer_arietinum_v1_Contig1434 vs. TrEMBL
Match: D7TQQ2_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_40.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00025730001 PE=4 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 8.591e-36
Identity = 66/99 (66.67%), Postives = 78/99 (78.79%), Query Frame = -3

Query:  229 MDKYFSFAYRGDPGVPHADPHRFVNIWIGSLAFTAWDIINPYMWHIGSFTFNWHDRVMLFEQYHWKRAMKKNQSYEFMWNKTWDKAHRKSYYFNWPGYF 525
            M+KYF  AYRGDPGVPHADP RFVNIWIGS+AF+A   +NPYMW + S  FNWHD+ MLFEQ+HWK+A+ K Q Y+F WN+  D+  R SYYFNWP YF
Sbjct:    1 MEKYFGNAYRGDPGVPHADPDRFVNIWIGSIAFSALTWVNPYMWQL-SNQFNWHDKAMLFEQHHWKKALAKKQPYKFKWNQYMDRDLRDSYYFNWPVYF 98

[Close]

BLAST of Cicer_arietinum_v1_Contig1434 vs. TrEMBL
Match: B9S0H9_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1355050 PE=4 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.240e-34
Identity = 65/99 (65.66%), Postives = 76/99 (76.77%), Query Frame = -3

Query:  229 MDKYFSFAYRGDPGVPHADPHRFVNIWIGSLAFTAWDIINPYMWHIGSFTFNWHDRVMLFEQYHWKRAMKKNQSYEFMWNKTWDKAHRKSYYFNWPGYF 525
            M+KYF  AYRGDPGVPHA+P RF NIWIGS AF+    INPYMWH+ S  FNWHD+  LFEQYHWK+AMKKN+ Y+F WN+  D+  R +YY NWP YF
Sbjct:    1 MEKYFGNAYRGDPGVPHAEPDRFFNIWIGSAAFSVMTFINPYMWHL-SNQFNWHDKAFLFEQYHWKKAMKKNEPYKFKWNE-MDREVRDNYYINWPIYF 97

[Close]

BLAST of Cicer_arietinum_v1_Contig1434 vs. TrEMBL
Match: A9PEF9_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_835519 PE=4 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.791e-33
Identity = 65/99 (65.66%), Postives = 75/99 (75.76%), Query Frame = -3

Query:  229 MDKYFSFAYRGDPGVPHADPHRFVNIWIGSLAFTAWDIINPYMWHIGSFTFNWHDRVMLFEQYHWKRAMKKNQSYEFMWNKTWDKAHRKSYYFNWPGYF 525
            M+KYF  AYRGDPGVPHADP RFVNIWIGS AF+     NPY+W + +  FNWHD+  LFEQYHWK+AMKK + Y+F WNK  D+  R SYYFNWP YF
Sbjct:    1 MEKYFGNAYRGDPGVPHADPDRFVNIWIGSAAFSILTWSNPYLWTLTN-QFNWHDKAFLFEQYHWKKAMKKKEPYKFKWNK-MDREVRDSYYFNWPIYF 97

[Close]

BLAST of Cicer_arietinum_v1_Contig1434 vs. TrEMBL
Match: Q6IDB3_ARATH (At3g09860 OS=Arabidopsis thaliana GN=At3g09860 PE=4 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.762e-32
Identity = 65/99 (65.66%), Postives = 73/99 (73.74%), Query Frame = -3

Query:  229 MDKYFSFAYRGDPGVPHADPHRFVNIWIGSLAFTAWDIINPYMWHIGSFTFNWHDRVMLFEQYHWKRAMKKNQSYEFMWNKTWDKAHRKSYYFNWPGYF 525
            M+KYF  AYRGDPGVPHAD  RFVNIWIGS AF+    +NPYMW + S  FN+HD+ MLFEQYHWK+A  K Q YEF WNK   K  R SYY+NWP YF
Sbjct:    1 MEKYFGNAYRGDPGVPHADADRFVNIWIGSAAFSVLTWVNPYMWQL-SNQFNYHDKWMLFEQYHWKKARAKKQPYEFKWNKI-PKEVRDSYYYNWPVYF 97

[Close]

BLAST of Cicer_arietinum_v1_Contig1434 vs. TrEMBL
Match: D7L8D4_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_897150 PE=4 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.762e-32
Identity = 65/99 (65.66%), Postives = 73/99 (73.74%), Query Frame = -3

Query:  229 MDKYFSFAYRGDPGVPHADPHRFVNIWIGSLAFTAWDIINPYMWHIGSFTFNWHDRVMLFEQYHWKRAMKKNQSYEFMWNKTWDKAHRKSYYFNWPGYF 525
            M+KYF  AYRGDPGVPHAD  RFVNIWIGS AF+    +NPYMW + S  FN+HD+ MLFEQYHWK+A  K Q YEF WNK   K  R SYY+NWP YF
Sbjct:    1 MEKYFGNAYRGDPGVPHADADRFVNIWIGSAAFSVLTWVNPYMWQL-SNQFNYHDKWMLFEQYHWKKARAKKQPYEFKWNKI-PKEVRDSYYYNWPVYF 97

[Close]

BLAST of Cicer_arietinum_v1_Contig1434 vs. TrEMBL
Match: A9S548_PHYPA (Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_74716 PE=4 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.966e-20
Identity = 54/144 (37.50%), Postives = 68/144 (47.22%), Query Frame = -3

Query:  229 MDKYFSFAYRGDPGVPHADPHRFVNIWIGSLAFTAWDIINPYMWH--------IGSFTF-------------------------------------NWHDRVMLFEQYHWKRAMKKNQSYEFMWNKTWDKAHRKSYYFNWPGYF 525
            M+K F  AY GDPGVPH+D   F +I+ GS+AF+A+ I  PY W         +  FT                                      +WHD  M+ EQ+HWKRA KK + YEF WNK  +K  R+SYY NW  YF
Sbjct:   21 MEKMFGPAYTGDPGVPHSDKEAFGSIFWGSVAFSAYSIACPYYWEQCNNMFKWVSVFTLFLDVLCFLVDFECFPGGGFRGLCVYIALTMSLDDVYRSWHDLAMVHEQHHWKRAQKKGKDYEFKWNKILNKTQRESYYHNWADYF 164

[Close]

BLAST of Cicer_arietinum_v1_Contig1434 vs. TrEMBL
Match: A9NZ45_PICSI (Putative uncharacterized protein OS=Picea sitchensis PE=4 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.875e-16
Identity = 44/100 (44.00%), Postives = 57/100 (57.00%), Query Frame = -3

Query:  229 MDKYFSFAYRGDPGVPHADPHRF-VNIWIGSLAFTAWDIINPYMWHIGSFTFNWHDRVMLFEQYHWKRAMKKNQSYEFMWNKTWDKAHRKSYYFNWPGYF 525
            MDK F  AY GDPG+PH+    F   IW   + F+   I NPY W   +   NWHD  M+ E    KRA+KK Q YE  +NK  +K  R+S+Y +WP +F
Sbjct:    1 MDKIFGPAYSGDPGIPHSGKEMFHTTIW-APVIFSIASIFNPYYWQSAT-EVNWHDWAMVHENTQRKRALKKKQPYEPKFNKLLNKPQRESFYHSWPVFF 98

[Close]

BLAST of Cicer_arietinum_v1_Contig1434 vs. TrEMBL
Match: Q9SF88_ARATH (F8A24.9 protein OS=Arabidopsis thaliana GN=F8A24.9 PE=4 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.743e-12
Identity = 32/48 (66.67%), Postives = 37/48 (77.08%), Query Frame = -3

Query:  382 MDKYFSFAYRGDPGVPHADPHRFVNIWIGSLAFTAWDIINPYMWHIGS 525
            M+KYF  AYRGDPGVPHAD  RFVNIWIGS AF+    +NPYMW + +
Sbjct:    1 MEKYFGNAYRGDPGVPHADADRFVNIWIGSAAFSVLTWVNPYMWQLSN 48

[Close]

BLAST of Cicer_arietinum_v1_Contig1434 vs. TrEMBL
Match: B6UI37_MAIZE (Putative uncharacterized protein OS=Zea mays PE=4 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 3.402e-8
Identity = 27/76 (35.53%), Postives = 42/76 (55.26%), Query Frame = -3

Query:  307 DKYFSFAYRGDPGVPHADPHRFVNIWIGSLAFTAWDIINPY----MWHIGSFTFNWHDRVMLFEQYHWKRAMKKNQ 522
            D Y++ AYRGDP VPH+DP R ++ W G+ A  A   ++ +      H+ S    W D  +  +Q  WK+A +K +
Sbjct:    5 DDYWARAYRGDPAVPHSDPQRLISTWTGAFALGAAACVHHHASALASHLKSLPATWQDMTLALDQKRWKKAFEKKR 80

[Close]

BLAST of Cicer_arietinum_v1_Contig1434 vs. TAIR peptide
Match: AT3G09860.1 (| Symbols: | unknown protein; Has 34 Blast hits to 34 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:3026140-3027000 FORWARD LENGTH=98)

HSP 1 Score: 140.969 bits (354), Expect = 4.394e-34
Identity = 65/99 (65.66%), Postives = 73/99 (73.74%), Query Frame = -3

Query:  229 MDKYFSFAYRGDPGVPHADPHRFVNIWIGSLAFTAWDIINPYMWHIGSFTFNWHDRVMLFEQYHWKRAMKKNQSYEFMWNKTWDKAHRKSYYFNWPGYF 525
            M+KYF  AYRGDPGVPHAD  RFVNIWIGS AF+    +NPYMW + S  FN+HD+ MLFEQYHWK+A  K Q YEF WNK   K  R SYY+NWP YF
Sbjct:    1 MEKYFGNAYRGDPGVPHADADRFVNIWIGSAAFSVLTWVNPYMWQL-SNQFNYHDKWMLFEQYHWKKARAKKQPYEFKWNKI-PKEVRDSYYYNWPVYF 97

The following BLAST results are available for this feature:

BLAST of Cicer_arietinum_v1_Contig1434 vs. TrEMBL
BLAST of Cicer_arietinum_v1_Contig1434 vs. TAIR peptide

BLAST of Cicer_arietinum_v1_Contig1434 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
C6T3S2_SOYBN	2.185e-39	68.69	Putative uncharacterized protein OS=Glycine max PE...	[more]
D7TQQ2_VITVI	8.591e-36	66.67	Whole genome shotgun sequence of line PN40024, sca...	[more]
B9S0H9_RICCO	1.240e-34	65.66	Putative uncharacterized protein OS=Ricinus commun...	[more]
A9PEF9_POPTR	1.791e-33	65.66	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
Q6IDB3_ARATH	5.762e-32	65.66	At3g09860 OS=Arabidopsis thaliana GN=At3g09860 PE=...	[more]
D7L8D4_ARALY	5.762e-32	65.66	Putative uncharacterized protein OS=Arabidopsis ly...	[more]
A9S548_PHYPA	2.966e-20	37.50	Predicted protein OS=Physcomitrella patens subsp. ...	[more]
A9NZ45_PICSI	9.875e-16	44.00	Putative uncharacterized protein OS=Picea sitchens...	[more]
Q9SF88_ARATH	1.743e-12	66.67	F8A24.9 protein OS=Arabidopsis thaliana GN=F8A24.9...	[more]
B6UI37_MAIZE	3.402e-8	35.53	Putative uncharacterized protein OS=Zea mays PE=4 ...	[more]

BLAST of Cicer_arietinum_v1_Contig1434 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 1


Match Name	E-value	Identity	Description
AT3G09860.1	4.394e-34	65.66	\| Symbols: \| unknown protein; Has 34 Blast hits t...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 37..51 score

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>Cicer_arietinum_v1_Contig1434 ID=Cicer_arietinum_v1_Contig1434; Name=Cicer_arietinum_v1_Contig1434; organism=Cicer arietinum; type=contig; length=578bp
TCTATTTTCCATAATTTTTGCATTTAACACACATCTCAGTAATCCAATGG
CATCACAAGGACAATGGACATAGCACAATACACACATCCTTGTCATTGTT
TAAACTTGTATTCAAAAGTCATATTCGAAAGTACAACCAAAGAGGGGTCA
TAAATTTTCTCCAAGTTTACAACTGAAGTAATGATAATACAATGTCAACA
ACGAGGGAAAATAAAGAAAAAACTAAGTGAAATACCCAGGCCAATTGAAG
TAATATGATTTTCGGTGGGCCTTATCCCAGGTCTTGTTCCACATGAACTC
ATATGATTGATTCTTCTTCATTGCCCTTTTCCAGTGATATTGCTCAAATA
GCATTACCCTATCATGCCAATTGAAGGTAAAGGAACCGATGTGCCACATA
TAGGGATTAATAATGTCCCAAGCAGTAAAGGCAAGGGAACCGATCCAAAT
GTTGACAAAACGGTGTGGATCTGCATGAGGAACACCCGGGTCACCGCGAT
AAGCAAAACTGAAATACTTGTCCATTGCTTTTGATTTCTCACTCACGGTT
TACCACTATCTTCTCTTCCTTTTTATCC

Search form

Cicer_arietinum_v1_Contig1434