Cicer_arietinum_v1_Contig1489

Contig Overview
NameCicer_arietinum_v1_Contig1489
Unique NameCicer_arietinum_v1_Contig1489
Typecontig
OrganismCicer arietinum (chickpea)
Sequence length511
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
GR405792ESTGR405792:1..511 -
GR399189ESTGR399189:1..487 +
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Cicer arietinum unigene v1Cicer arietinum unigene v1contig
Analyses
This contig is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum unigene v12010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Trembl2010-12-28
InterProScan analysis for Cicer arietinum unigene v12010-12-29
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
GR405792GR405792Cicer arietinumEST
GR399189GR399189Cicer arietinumEST


Homology
[Close]
BLAST of Cicer_arietinum_v1_Contig1489 vs. TrEMBL
Match: B9SBE6_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0716650 PE=4 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.966e-12
Identity = 34/40 (85.00%), Postives = 36/40 (90.00%), Query Frame = -1 
Query:  323 NNVCGSISCDKLDRVANWVGSNVAYAFFASLERCSCINLS 442
            NN C  ISCDKLDRVA+WVGSNVA AFFASLERCSCINL+
Sbjct:    6 NNNCSLISCDKLDRVASWVGSNVASAFFASLERCSCINLN 45
[Close]
BLAST of Cicer_arietinum_v1_Contig1489 vs. TrEMBL
Match: B9GR35_POPTR (Predicted protein (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_409917 PE=4 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.596e-11
Identity = 37/58 (63.79%), Postives = 42/58 (72.41%), Query Frame = -1 
Query:  272 NNVCGSISCDKLDRVANWVGSNVAYAFFASLERCSCINL-SXXXXXXXXXXDRPLMVT 442
            NN C  +SC+KLDRVA+WVG NVA AFFASLERCSCINL +          DRPLM+T
Sbjct:   15 NNNCNFMSCEKLDRVASWVGVNVASAFFASLERCSCINLNTTDLEDDEEARDRPLMLT 72
[Close]
BLAST of Cicer_arietinum_v1_Contig1489 vs. TAIR peptide
Match: AT4G10810.1 (| Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G24026.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr4:6645986-6646231 REVERSE LENGTH=81)

HSP 1 Score: 50.8322 bits (120), Expect = 4.777e-7
Identity = 22/33 (66.67%), Postives = 27/33 (81.82%), Query Frame = -1 
Query:  323 SCDKLDRVANWVGSNVAYAFFASLERCSCINLS 421
            S +KLD+ A+WV + V  AFFASLERCSC+NLS
Sbjct:   21 SLEKLDQAASWVSTTVISAFFASLERCSCVNLS 53
The following BLAST results are available for this feature:
BLAST of Cicer_arietinum_v1_Contig1489 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 2
Match NameE-valueIdentityDescription
B9SBE6_RICCO5.966e-1285.00Putative uncharacterized protein OS=Ricinus commun... [more]
B9GR35_POPTR6.596e-1163.79Predicted protein (Fragment) OS=Populus trichocarp... [more]
back to top
BLAST of Cicer_arietinum_v1_Contig1489 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
AT4G10810.14.777e-766.67| Symbols: | unknown protein; FUNCTIONS IN: molec... [more]
back to top
InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 51..61
score

Sequences
The following sequences are available for this feature:

contig sequence

>Cicer_arietinum_v1_Contig1489 ID=Cicer_arietinum_v1_Contig1489; Name=Cicer_arietinum_v1_Contig1489; organism=Cicer arietinum; type=contig; length=511bp
GTAACGACATAAATAATCTAATATATAATTAACATCAAATAAAAGTATAA
TAACAAGATCCAACAAATTCCACACACACAAAAAAAAAGACTAAATTTTT
ATCATAAAAAGACCAATAACTAAACACCCCAAGAACATAAAGAGTTAAAA
TTACAAACCCCAAAAGAGAAAAGAGTGAGAATTTGATGAATCAAGGACGA
AGGTTGGATTTTGATGAAAGAGGGTTGTTGGTAGTGGTGGGGCCCTCAAA
GGGTAAATGAGAAAGAGAATTGGTAACCATAAGAGGACGATCATCATTGT
TTTCATCTTCGGTATCAGTAGTGCTAAGGTTGATACAAGAACAACGTTCC
AATGAAGCAAAGAAAGCATAAGCAACGTTTGAGCCAACCCAGTTGGCAAC
TCGGTCCAGTTTGTCGCAAGAAATTGATCCACACACGTTGTTGAACATTT
TCCTTATTTTTATCACAAGACTTTAATTATTGTGTCAACCAAAACAAGAG
CGTCAAGTATC
back to top