Cicer_arietinum_v1_Contig1582

Contig Overview


Name	Cicer_arietinum_v1_Contig1582
Unique Name	Cicer_arietinum_v1_Contig1582
Type	contig
Organism	Cicer arietinum (chickpea)
Sequence length	481

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
GR393891	EST	GR393891:1..338 +	Cicer arietinum unigene v1	n/a
GR397813	EST	GR397813:2..341 +	Cicer arietinum unigene v1	n/a
GR401984	EST	GR401984:2..417 +	Cicer arietinum unigene v1	n/a
GR396459	EST	GR396459:33..425 +	Cicer arietinum unigene v1	n/a
GR393671	EST	GR393671:1..447 +	Cicer arietinum unigene v1	n/a
GR393736	EST	GR393736:14..444 -	Cicer arietinum unigene v1	n/a
GR407037	EST	GR407037:1..465 +	Cicer arietinum unigene v1	n/a
GR408280	EST	GR408280:1..482 +	Cicer arietinum unigene v1	n/a
GR401314	EST	GR401314:6..482 -	Cicer arietinum unigene v1	n/a
GR401315	EST	GR401315:2..482 +	Cicer arietinum unigene v1	n/a

Unigenes

This contig is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	contig

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide	2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Relationships

The following EST feature(s) are a part of this contig:


Feature Name	Unique Name	Species	Type
GR393891	GR393891	Cicer arietinum	EST
GR397813	GR397813	Cicer arietinum	EST
GR401984	GR401984	Cicer arietinum	EST
GR396459	GR396459	Cicer arietinum	EST
GR393671	GR393671	Cicer arietinum	EST
GR393736	GR393736	Cicer arietinum	EST
GR407037	GR407037	Cicer arietinum	EST
GR408280	GR408280	Cicer arietinum	EST
GR401314	GR401314	Cicer arietinum	EST
GR401315	GR401315	Cicer arietinum	EST

Homology

[Close]

BLAST of Cicer_arietinum_v1_Contig1582 vs. SwissProt
Match: RS28_MAIZE (40S ribosomal protein S28 OS=Zea mays GN=RPS28 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.237e-15
Identity = 40/51 (78.43%), Postives = 44/51 (86.27%), Query Frame = 3

Query:   63 MDSQVKYASVVKVIGRTGSRGQVTQVRVRFNDDHTRLITRNVKGPVREGDV 215
            MD+QVK A VVKV+GRTGSRGQVTQVRV+F DD  RLI RNVKGPV EGD+
Sbjct:    1 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVCEGDI 51

[Close]

BLAST of Cicer_arietinum_v1_Contig1582 vs. SwissProt
Match: RS282_ARATH (40S ribosomal protein S28-2 OS=Arabidopsis thaliana GN=RPS28C PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.103e-14
Identity = 40/51 (78.43%), Postives = 44/51 (86.27%), Query Frame = 3

Query:   63 MDSQVKYASVVKVIGRTGSRGQVTQVRVRFNDDHTRLITRNVKGPVREGDV 215
            MDSQ+K+A VVKV+GRTGSRGQVTQVRV+F D   R I RNVKGPVREGDV
Sbjct:    1 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFTDS-DRFIMRNVKGPVREGDV 50

[Close]

BLAST of Cicer_arietinum_v1_Contig1582 vs. SwissProt
Match: RS281_ARATH (40S ribosomal protein S28-1 OS=Arabidopsis thaliana GN=RPS28A PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.587e-14
Identity = 39/51 (76.47%), Postives = 44/51 (86.27%), Query Frame = 3

Query:   63 MDSQVKYASVVKVIGRTGSRGQVTQVRVRFNDDHTRLITRNVKGPVREGDV 215
            MDSQ+K+A VVKV+GRTGSRGQVTQVRV+F D   R I RNVKGPVREGD+
Sbjct:    1 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFTDS-DRYIMRNVKGPVREGDI 50

[Close]

BLAST of Cicer_arietinum_v1_Contig1582 vs. SwissProt
Match: RS28_KLUMA (40S ribosomal protein S28 OS=Kluyveromyces marxianus GN=RPS28 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.571e-12
Identity = 37/53 (69.81%), Postives = 42/53 (79.25%), Query Frame = 3

Query:   63 MDSQ--VKYASVVKVIGRTGSRGQVTQVRVRFNDDHTRLITRNVKGPVREGDV 215
            MDS+  V  A V+KV+GRTGSRG VTQVRV F +D TR I RNVKGPVREGD+
Sbjct:    1 MDSKTPVTLAKVIKVLGRTGSRGGVTQVRVEFLEDTTRTIVRNVKGPVREGDI 53

[Close]

BLAST of Cicer_arietinum_v1_Contig1582 vs. SwissProt
Match: RS28_KLULA (40S ribosomal protein S28 OS=Kluyveromyces lactis GN=RPS28 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.727e-12
Identity = 34/47 (72.34%), Postives = 38/47 (80.85%), Query Frame = 3

Query:   75 VKYASVVKVIGRTGSRGQVTQVRVRFNDDHTRLITRNVKGPVREGDV 215
            V  A V+KV+GRTGSRG VTQVRV F +D TR I RNVKGPVREGD+
Sbjct:    7 VTLAKVIKVLGRTGSRGGVTQVRVEFLEDTTRTIVRNVKGPVREGDI 53

[Close]

BLAST of Cicer_arietinum_v1_Contig1582 vs. SwissProt
Match: RS28_SCHPO (40S ribosomal protein S28 OS=Schizosaccharomyces pombe GN=rps28a PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 7.480e-12
Identity = 37/54 (68.52%), Postives = 41/54 (75.93%), Query Frame = 3

Query:   63 MDSQ---VKYASVVKVIGRTGSRGQVTQVRVRFNDDHTRLITRNVKGPVREGDV 215
            MDS    VK A V+KV+GRTGSRG VTQVRV F DD +R I RNVKGPVRE D+
Sbjct:    1 MDSSKVPVKLAKVIKVLGRTGSRGGVTQVRVEFMDDTSRSIIRNVKGPVREDDI 54

[Close]

BLAST of Cicer_arietinum_v1_Contig1582 vs. SwissProt
Match: RS28_RAT (40S ribosomal protein S28 OS=Rattus norvegicus GN=Rps28 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 7.480e-12
Identity = 34/47 (72.34%), Postives = 38/47 (80.85%), Query Frame = 3

Query:   75 VKYASVVKVIGRTGSRGQVTQVRVRFNDDHTRLITRNVKGPVREGDV 215
            +K A V KV+GRTGS+GQ TQVRV F DD +R I RNVKGPVREGDV
Sbjct:    9 IKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDV 55

[Close]

BLAST of Cicer_arietinum_v1_Contig1582 vs. SwissProt
Match: RS28_PIG (40S ribosomal protein S28 OS=Sus scrofa GN=RPS28 PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 7.480e-12
Identity = 34/47 (72.34%), Postives = 38/47 (80.85%), Query Frame = 3

Query:   75 VKYASVVKVIGRTGSRGQVTQVRVRFNDDHTRLITRNVKGPVREGDV 215
            +K A V KV+GRTGS+GQ TQVRV F DD +R I RNVKGPVREGDV
Sbjct:    9 IKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDV 55

[Close]

BLAST of Cicer_arietinum_v1_Contig1582 vs. SwissProt
Match: RS28_MOUSE (40S ribosomal protein S28 OS=Mus musculus GN=Rps28 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 7.480e-12
Identity = 34/47 (72.34%), Postives = 38/47 (80.85%), Query Frame = 3

Query:   75 VKYASVVKVIGRTGSRGQVTQVRVRFNDDHTRLITRNVKGPVREGDV 215
            +K A V KV+GRTGS+GQ TQVRV F DD +R I RNVKGPVREGDV
Sbjct:    9 IKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDV 55

[Close]

BLAST of Cicer_arietinum_v1_Contig1582 vs. SwissProt
Match: RS28_ICTPU (40S ribosomal protein S28 OS=Ictalurus punctatus GN=rps28 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 7.480e-12
Identity = 34/47 (72.34%), Postives = 37/47 (78.72%), Query Frame = 3

Query:   75 VKYASVVKVIGRTGSRGQVTQVRVRFNDDHTRLITRNVKGPVREGDV 215
            +K A V KV+GRTGS+GQ TQVRV F DD  R I RNVKGPVREGDV
Sbjct:    9 IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDV 55

[Close]

BLAST of Cicer_arietinum_v1_Contig1582 vs. TrEMBL
Match: B8APC5_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_10164 PE=4 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.431e-15
Identity = 44/75 (58.67%), Postives = 53/75 (70.67%), Query Frame = 3

Query:   30 FGCSLSSINSK-------------MDSQVKYASVVKVIGRTGSRGQVTQVRVRFNDDHTRLITRNVKGPVREGDV 215
            +GC +S +++              MD+QVK A VVKV+GRTGSRGQVTQVRV+F DD  RLI RNVKGPVREGD+
Sbjct:   13 YGCCISDVSNSRYKTSRRLELFASMDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 87

[Close]

BLAST of Cicer_arietinum_v1_Contig1582 vs. TrEMBL
Match: D7TI81_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_7.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00033420001 PE=4 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.175e-15
Identity = 49/77 (63.64%), Postives = 54/77 (70.13%), Query Frame = 3

Query:    3 GFLYFLAACFGCSLSSINS------KMDSQVKYASVVKVIGRTGSRGQVTQVRVRFNDDHTRLITRNVKGPVREGDV 215
            GFL   AA    SLSS         KM+S VK+A VVKV+GRTGSRGQVTQVRV+F DD  R I RNVKGPVREGD+
Sbjct:   21 GFLSSEAAVSAPSLSSSRRLLSSQCKMESGVKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDI 97

[Close]

BLAST of Cicer_arietinum_v1_Contig1582 vs. TrEMBL
Match: B9FBI5_ORYSJ (Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_09549 PE=4 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.175e-15
Identity = 44/58 (75.86%), Postives = 49/58 (84.48%), Query Frame = 3

Query:   51 INSK---MDSQVKYASVVKVIGRTGSRGQVTQVRVRFNDDHTRLITRNVKGPVREGDV 215
            +NSK   MD+QVK A VVKV+GRTGSRGQVTQVRV+F DD  RLI RNVKGPVREGD+
Sbjct:   22 LNSKPHLMDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 79

[Close]

BLAST of Cicer_arietinum_v1_Contig1582 vs. TrEMBL
Match: B8BGS7_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_33537 PE=4 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.175e-15
Identity = 42/57 (73.68%), Postives = 48/57 (84.21%), Query Frame = 3

Query:   45 SSINSKMDSQVKYASVVKVIGRTGSRGQVTQVRVRFNDDHTRLITRNVKGPVREGDV 215
            +S   +MD+QVK A VVKV+GRTGSRGQVTQVRV+F DD  RLI RNVKGPVREGD+
Sbjct:  330 NSSPGRMDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 386

[Close]

BLAST of Cicer_arietinum_v1_Contig1582 vs. TrEMBL
Match: B9S469_RICCO (Ribosomal protein S28, putative OS=Ricinus communis GN=RCOM_0037190 PE=4 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.147e-15
Identity = 41/51 (80.39%), Postives = 45/51 (88.24%), Query Frame = 3

Query:   63 MDSQVKYASVVKVIGRTGSRGQVTQVRVRFNDDHTRLITRNVKGPVREGDV 215
            MDSQ+K+A VVKV+GRTGSRGQVTQVRV+F DD  R I RNVKGPVREGDV
Sbjct:    1 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDV 51

[Close]

BLAST of Cicer_arietinum_v1_Contig1582 vs. TrEMBL
Match: Q7X9K4_WHEAT (S28 ribosomal protein (Fragment) OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.074e-15
Identity = 41/51 (80.39%), Postives = 45/51 (88.24%), Query Frame = 3

Query:   63 MDSQVKYASVVKVIGRTGSRGQVTQVRVRFNDDHTRLITRNVKGPVREGDV 215
            MD+QVK A VVKV+GRTGSRGQVTQVRV+F DD  RLI RNVKGPVREGD+
Sbjct:   22 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 72

[Close]

BLAST of Cicer_arietinum_v1_Contig1582 vs. TrEMBL
Match: Q0IXR7_ORYSJ (Os03g0167100 protein OS=Oryza sativa subsp. japonica GN=Os10g0411700 PE=4 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.074e-15
Identity = 41/51 (80.39%), Postives = 45/51 (88.24%), Query Frame = 3

Query:   63 MDSQVKYASVVKVIGRTGSRGQVTQVRVRFNDDHTRLITRNVKGPVREGDV 215
            MD+QVK A VVKV+GRTGSRGQVTQVRV+F DD  RLI RNVKGPVREGD+
Sbjct:    1 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 51

[Close]

BLAST of Cicer_arietinum_v1_Contig1582 vs. TrEMBL
Match: C5WWU9_SORBI (Putative uncharacterized protein Sb01g046070 OS=Sorghum bicolor GN=Sb01g046070 PE=4 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.074e-15
Identity = 41/51 (80.39%), Postives = 45/51 (88.24%), Query Frame = 3

Query:   63 MDSQVKYASVVKVIGRTGSRGQVTQVRVRFNDDHTRLITRNVKGPVREGDV 215
            MD+QVK A VVKV+GRTGSRGQVTQVRV+F DD  RLI RNVKGPVREGD+
Sbjct:    1 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 51

[Close]

BLAST of Cicer_arietinum_v1_Contig1582 vs. TrEMBL
Match: B6T1V2_MAIZE (40S ribosomal protein S28 OS=Zea mays PE=4 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.074e-15
Identity = 41/51 (80.39%), Postives = 45/51 (88.24%), Query Frame = 3

Query:   63 MDSQVKYASVVKVIGRTGSRGQVTQVRVRFNDDHTRLITRNVKGPVREGDV 215
            MD+QVK A VVKV+GRTGSRGQVTQVRV+F DD  RLI RNVKGPVREGD+
Sbjct:    1 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 51

[Close]

BLAST of Cicer_arietinum_v1_Contig1582 vs. TrEMBL
Match: B4FW18_MAIZE (40S ribosomal protein S28 OS=Zea mays PE=4 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.074e-15
Identity = 41/51 (80.39%), Postives = 45/51 (88.24%), Query Frame = 3

Query:   63 MDSQVKYASVVKVIGRTGSRGQVTQVRVRFNDDHTRLITRNVKGPVREGDV 215
            MD+QVK A VVKV+GRTGSRGQVTQVRV+F DD  RLI RNVKGPVREGD+
Sbjct:    1 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 51

[Close]

BLAST of Cicer_arietinum_v1_Contig1582 vs. TAIR peptide
Match: AT5G64140.1 (| Symbols: RPS28 | ribosomal protein S28 | chr5:25667529-25667723 REVERSE LENGTH=64)

HSP 1 Score: 78.1814 bits (191), Expect = 2.439e-15
Identity = 40/51 (78.43%), Postives = 44/51 (86.27%), Query Frame = 3

Query:   63 MDSQVKYASVVKVIGRTGSRGQVTQVRVRFNDDHTRLITRNVKGPVREGDV 215
            MDSQ+K+A VVKV+GRTGSRGQVTQVRV+F D   R I RNVKGPVREGDV
Sbjct:    1 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFTDS-DRFIMRNVKGPVREGDV 50

[Close]

BLAST of Cicer_arietinum_v1_Contig1582 vs. TAIR peptide
Match: AT5G03850.1 (| Symbols: | Nucleic acid-binding, OB-fold-like protein | chr5:1028542-1028736 REVERSE LENGTH=64)

HSP 1 Score: 77.411 bits (189), Expect = 4.160e-15
Identity = 39/51 (76.47%), Postives = 44/51 (86.27%), Query Frame = 3

Query:   63 MDSQVKYASVVKVIGRTGSRGQVTQVRVRFNDDHTRLITRNVKGPVREGDV 215
            MDSQ+K+A VVKV+GRTGSRGQVTQVRV+F D   R I RNVKGPVREGD+
Sbjct:    1 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFTDS-DRYIMRNVKGPVREGDI 50

[Close]

BLAST of Cicer_arietinum_v1_Contig1582 vs. TAIR peptide
Match: AT3G10090.1 (| Symbols: | Nucleic acid-binding, OB-fold-like protein | chr3:3108960-3109154 REVERSE LENGTH=64)

HSP 1 Score: 77.411 bits (189), Expect = 4.160e-15
Identity = 39/51 (76.47%), Postives = 44/51 (86.27%), Query Frame = 3

Query:   63 MDSQVKYASVVKVIGRTGSRGQVTQVRVRFNDDHTRLITRNVKGPVREGDV 215
            MDSQ+K+A VVKV+GRTGSRGQVTQVRV+F D   R I RNVKGPVREGD+
Sbjct:    1 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFTDS-DRYIMRNVKGPVREGDI 50

The following BLAST results are available for this feature:

BLAST of Cicer_arietinum_v1_Contig1582 vs. SwissProt
BLAST of Cicer_arietinum_v1_Contig1582 vs. TrEMBL
BLAST of Cicer_arietinum_v1_Contig1582 vs. TAIR peptide

BLAST of Cicer_arietinum_v1_Contig1582 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 10


Match Name	E-value	Identity	Description
RS28_MAIZE	4.237e-15	78.43	40S ribosomal protein S28 OS=Zea mays GN=RPS28 PE=...	[more]
RS282_ARATH	2.103e-14	78.43	40S ribosomal protein S28-2 OS=Arabidopsis thalian...	[more]
RS281_ARATH	3.587e-14	76.47	40S ribosomal protein S28-1 OS=Arabidopsis thalian...	[more]
RS28_KLUMA	2.571e-12	69.81	40S ribosomal protein S28 OS=Kluyveromyces marxian...	[more]
RS28_KLULA	5.727e-12	72.34	40S ribosomal protein S28 OS=Kluyveromyces lactis ...	[more]
RS28_SCHPO	7.480e-12	68.52	40S ribosomal protein S28 OS=Schizosaccharomyces p...	[more]
RS28_RAT	7.480e-12	72.34	40S ribosomal protein S28 OS=Rattus norvegicus GN=...	[more]
RS28_PIG	7.480e-12	72.34	40S ribosomal protein S28 OS=Sus scrofa GN=RPS28 P...	[more]
RS28_MOUSE	7.480e-12	72.34	40S ribosomal protein S28 OS=Mus musculus GN=Rps28...	[more]
RS28_ICTPU	7.480e-12	72.34	40S ribosomal protein S28 OS=Ictalurus punctatus G...	[more]

BLAST of Cicer_arietinum_v1_Contig1582 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
B8APC5_ORYSI	2.431e-15	58.67	Putative uncharacterized protein OS=Oryza sativa s...	[more]
D7TI81_VITVI	3.175e-15	63.64	Whole genome shotgun sequence of line PN40024, sca...	[more]
B9FBI5_ORYSJ	3.175e-15	75.86	Putative uncharacterized protein OS=Oryza sativa s...	[more]
B8BGS7_ORYSI	3.175e-15	73.68	Putative uncharacterized protein OS=Oryza sativa s...	[more]
B9S469_RICCO	4.147e-15	80.39	Ribosomal protein S28, putative OS=Ricinus communi...	[more]
Q7X9K4_WHEAT	7.074e-15	80.39	S28 ribosomal protein (Fragment) OS=Triticum aesti...	[more]
Q0IXR7_ORYSJ	7.074e-15	80.39	Os03g0167100 protein OS=Oryza sativa subsp. japoni...	[more]
C5WWU9_SORBI	7.074e-15	80.39	Putative uncharacterized protein Sb01g046070 OS=So...	[more]
B6T1V2_MAIZE	7.074e-15	80.39	40S ribosomal protein S28 OS=Zea mays PE=4 SV=1	[more]
B4FW18_MAIZE	7.074e-15	80.39	40S ribosomal protein S28 OS=Zea mays PE=4 SV=1	[more]

BLAST of Cicer_arietinum_v1_Contig1582 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 3


Match Name	E-value	Identity	Description
AT5G64140.1	2.439e-15	78.43	\| Symbols: RPS28 \| ribosomal protein S28 \| chr5:25...	[more]
AT5G03850.1	4.160e-15	76.47	\| Symbols: \| Nucleic acid-binding, OB-fold-like p...	[more]
AT3G10090.1	4.160e-15	76.47	\| Symbols: \| Nucleic acid-binding, OB-fold-like p...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000289	Ribosomal protein S28e	PANTHER	PTHR10769	RIBOSOMAL PROTEIN S28	coord: 18..85 score: 1.6
IPR000289	Ribosomal protein S28e	PFAM	PF01200	Ribosomal_S28e	coord: 22..85 score: 2.2
IPR000289	Ribosomal protein S28e	PROSITE	PS00961	RIBOSOMAL_S28E	coord: 76..84 score
IPR012340	Nucleic acid-binding, OB-fold	GENE3D	2.40.50.140	no description	coord: 21..85 score: 5
IPR016027	Nucleic acid-binding, OB-fold-like	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 20..85 score: 1.7
None	No IPR available	PANTHER	PTHR10769:SF1	40S RIBOSOMAL PROTEIN S28	coord: 18..85 score: 1.6
None	No IPR available	SEG	seg	seg	coord: 72..85 score

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>Cicer_arietinum_v1_Contig1582 ID=Cicer_arietinum_v1_Contig1582; Name=Cicer_arietinum_v1_Contig1582; organism=Cicer arietinum; type=contig; length=481bp
GAGGGTTTCTGTATTTTCTCGCAGCTTGTTTCGGGTGCTCTCTTTCGTCA
ATCAACAGCAAAATGGATTCTCAAGTCAAGTATGCTTCTGTCGTCAAAGT
TATTGGCCGTACCGGTTCTAGAGGACAGGTGACTCAAGTTAGGGTGAGGT
TTAATGATGATCATACCCGTCTCATCACGAGGAACGTGAAAGGACCAGTC
AGAGAAGGAGATGTCCTCACTCTACTCGAGTCTGAAAGAGAAGCAAGGAG
GTTGAGATAGAGTTTTAAAAAGAAGTGTCAAGTTTGCGATAATGAAACCT
TCAATGTTTTGTGTTTTTGGTGGTATTTGACAGTTGTTTGTGATAATGAA
ACCTTCAATATTTTGTGTTTTGGGTGTTATTTAGCAGATGTGAACTGTTA
TTATTTAAATTTTAATTATTAACCACCTATTTTGACTTTATATTTTATTT
TGGGTGTTTTGAATAAATTTTTGTGTTGACC

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular anatomical structure
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **INTERPRO**
Term	Definition
IPR000289	Ribosomal_eS28
IPR012340	NA-bd_OB-fold
IPR016027	Nucleic acid-binding, OB-fold-like

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Cicer_arietinum_v1_Contig1582