Cicer_arietinum_v1_Contig162

Contig Overview


Name	Cicer_arietinum_v1_Contig162
Unique Name	Cicer_arietinum_v1_Contig162
Type	contig
Organism	Cicer arietinum (chickpea)
Sequence length	664

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
HO065756	EST	HO065756:1..459 +	Cicer arietinum unigene v1	n/a
HO062273	EST	HO062273:42..656 +	Cicer arietinum unigene v1	n/a
HO062297	EST	HO062297:42..664 +	Cicer arietinum unigene v1	n/a

Unigenes

This contig is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	contig

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide	2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Relationships

The following EST feature(s) are a part of this contig:


Feature Name	Unique Name	Species	Type
HO065756	HO065756	Cicer arietinum	EST
HO062273	HO062273	Cicer arietinum	EST
HO062297	HO062297	Cicer arietinum	EST

Homology

[Close]

BLAST of Cicer_arietinum_v1_Contig162 vs. SwissProt
Match: FBW4_ARATH (F-box/WD-40 repeat-containing protein At3g52030 OS=Arabidopsis thaliana GN=At3g52030 PE=2 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 7.321e-38
Identity = 80/173 (46.24%), Postives = 117/173 (67.63%), Query Frame = -3

Query:  126 GSVTISDPSSAQKVATLRSS-DVRGIRTLCL--GSQLLFAGSAVGYTYCWDMRTRRLMWKTRVSPNVVYSLQHMQSDKSTLAVGGIDGILRFLNQNDGNIVSSCIIDNKLLSTH-QSNSGSIQRRKGKRLPEDTYINIDVIPMTSRPFITCLAVGMKKVVTTHNTRDIRLWKF 632
            G VT+SDP   Q VATL+S+    GI+T+C   G+ L F G+  GY  CWD+R    +W+ RVSPNVVYS+Q +++D S +  GGIDG+LR ++Q  G ++S  I+D+K  +T  ++N   I++R+GKR+ +D  + ID I    RP I+C+A+GMKK+VT HN + I +WKF
Sbjct:  281 GRVTVSDPLMDQPVATLKSTITAGGIQTICFNQGTNLAFIGTTGGYVSCWDLRKMDRLWEKRVSPNVVYSIQQLRNDTSVMVAGGIDGVLRMIDQKSGRVLSRVIMDDKFSTTSTRNNQVVIEKRRGKRVSQD--MEIDKIERKVRPQISCIAMGMKKMVTAHNGKCISVWKF 451

[Close]

BLAST of Cicer_arietinum_v1_Contig162 vs. TrEMBL
Match: B9RVI4_RICCO (F-box and wd40 domain protein, putative OS=Ricinus communis GN=RCOM_0962810 PE=4 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 7.622e-51
Identity = 104/173 (60.12%), Postives = 133/173 (76.88%), Query Frame = -3

Query:  123 GSVTISDPSSAQKVATLRSSDVRGIRTLCLG--SQLLFAGSAVGYTYCWDMRTRRLMWKTRVSPNVVYSLQHMQSDKSTLAVGGIDGILRFLNQNDGNIVSSCIIDNKLLSTHQSNS-GSIQRRKGKRLPEDTYINIDVIPMTSRPFITCLAVGMKKVVTTHNTRDIRLWKFK 632
            G +T+SD SS Q +ATL+ +D  GI+TLC    S ++F+G+A GYT CWD+R  R +W+TRVSPNVVYSLQH+ +DKS+L VGGIDG+LR L+QN G I+SS +ID+   S+    S G+I+RRKGK LP +T   ID IP +SRP ITCLAVGMKKVVTTHN++ IR+WKFK
Sbjct:  165 GRITVSDYSSDQCIATLKPTDSTGIKTLCFNPRSHMVFSGTAAGYTSCWDLRMMRRVWETRVSPNVVYSLQHLSNDKSSLVVGGIDGVLRILDQNSGIILSSYVIDHDAGSSSSGYSHGTIERRKGKSLPSETI--IDQIPRSSRPSITCLAVGMKKVVTTHNSKYIRVWKFK 335

[Close]

BLAST of Cicer_arietinum_v1_Contig162 vs. TrEMBL
Match: B9HNT8_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_821432 PE=4 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.437e-49
Identity = 101/173 (58.38%), Postives = 128/173 (73.99%), Query Frame = -3

Query:  120 GSVTISDPSSAQKVATLRSSDVRGIRTLCLG--SQLLFAGSAVGYTYCWDMRTRRLMWKTRVSPNVVYSLQHMQSDKSTLAVGGIDGILRFLNQNDGNIVSSCIIDNKLLSTHQSNSGSIQRRKGKRLPEDTYINIDVIPMTSRPFITCLAVGMKKVVTTHNTRDIRLWKFKD 632
            G +TIS  SS Q+VATLR +D  GI++LC    S  +FAG+  GY  CWD+RT R +WKTRVSPNVVYSLQHM+SD STL VGGIDG+LR L+QN G ++SS ++D+   ++     G I+R+ GKRLP D   NID IP T RP ITCLAVGM+KV+TTHN ++IR+WKF +
Sbjct:  269 GRITISGLSSDQRVATLRPTDSTGIKSLCFNPVSHQVFAGTTAGYASCWDLRTMRQLWKTRVSPNVVYSLQHMRSDTSTLVVGGIDGVLRVLDQNTGEVLSSYVMDHGTSTSSGYTHGVIERKIGKRLPYD--YNIDRIPKTVRPPITCLAVGMQKVITTHNIKNIRMWKFNN 439

[Close]

BLAST of Cicer_arietinum_v1_Contig162 vs. TrEMBL
Match: D7T397_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_64.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00032215001 PE=4 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 5.462e-49
Identity = 99/177 (55.93%), Postives = 127/177 (71.75%), Query Frame = -3

Query:  111 GSVTISDPSSAQKVATLRSSDVRGIRTLCLG--SQLLFAGSAVGYTYCWDMRTRRLMWKTRVSPNVVYSLQHMQSDKSTLAVGGIDGILRFLNQNDGNIVSSCIIDNKLLSTHQSNSGS-IQRRKGKRLPEDTYINIDVIPMTSRPFITCLAVGMKKVVTTHNTRDIRLWKFKDNNT 632
            GS+TIS  SS Q++A LRS+D  GIRTLC    S L+F+GS  GY  CWD+RT R +W+ R+SPNV+YS+QH+ SD  TL  GGIDG+LR L+QN G +VS C++D+    T    + S I+R+KG+R+ EDT   ID IP +SRP ITCLAVGM+KVVTTHN + IR+WKF    T
Sbjct:  258 GSITISGLSSDQRIAKLRSTDSTGIRTLCFNPRSHLVFSGSTAGYASCWDLRTMRPLWENRISPNVIYSMQHLCSDTHTLVAGGIDGVLRILDQNTGKVVSGCVMDDSPAPTSSQKTDSIIERKKGRRITEDTL--IDSIPKSSRPPITCLAVGMQKVVTTHNGKYIRMWKFHKEQT 432

[Close]

BLAST of Cicer_arietinum_v1_Contig162 vs. TrEMBL
Match: A5BAL7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_013775 PE=4 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.914e-47
Identity = 98/178 (55.06%), Postives = 126/178 (70.79%), Query Frame = -3

Query:  111 GSVTISDPSSAQKVATLRSSD-VRGIRTLCLG--SQLLFAGSAVGYTYCWDMRTRRLMWKTRVSPNVVYSLQHMQSDKSTLAVGGIDGILRFLNQNDGNIVSSCIIDNKLLSTHQSNSGS-IQRRKGKRLPEDTYINIDVIPMTSRPFITCLAVGMKKVVTTHNTRDIRLWKFKDNNT 632
            GS+TIS  SS Q++A LRS+D   GIRTLC    S L+F+GS  GY  CWD+RT R +W+ R+SPN +YS+QH+ SD  TL  GGIDG+LR L+QN G +VS C++D+    T    + S I+R+KG+R+ EDT   ID IP +SRP ITCLAVGM+KVVTTHN + IR+WKF    T
Sbjct:  293 GSITISGLSSDQRIAKLRSTDSTGGIRTLCFNPRSHLVFSGSTAGYASCWDLRTMRPLWENRISPNXIYSMQHLCSDTHTLVAGGIDGVLRILDQNTGKVVSGCVMDDSPAPTSSQKTDSIIERKKGRRITEDTL--IDSIPKSSRPPITCLAVGMQKVVTTHNGKYIRMWKFHKEQT 468

[Close]

BLAST of Cicer_arietinum_v1_Contig162 vs. TrEMBL
Match: B6TCZ0_MAIZE (F-box domain containing protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.395e-36
Identity = 82/176 (46.59%), Postives = 117/176 (66.48%), Query Frame = -3

Query:  123 TSGSVTISDPSSAQKVATLRSSD-VRGIRTL--CLGSQLLFAGSAVGYTYCWDMRTRRLMWKTRVSPNVVYSLQHMQSDKSTLAVGGIDGILRFLNQNDGNIVSSCIIDNKLLSTHQSNS-GSIQRRKGKRLPEDTYINIDVIPMTSRPFITCLAVGMKKVVTTHNTRDIRLWKFK 638
            T G+V I+D +S QK+  L+S      IR+L  C  S ++FAGS+ GY +CWD+RT R +W+ RVSPNV+YS +H+  D +TLAVGGIDG+LR + Q  G+I+ S ++D  L +   S S   I++++ +R+  D    +D IP   RP IT L+VGMKK+VTTH    IR+WKF+
Sbjct:  262 TFGNVAIADQTSGQKLGVLKSDHGPLAIRSLSSCTNSHMIFAGSSAGYAHCWDLRTLRPLWEKRVSPNVIYSTRHLPGDTATLAVGGIDGVLRVICQRTGDIIRSLVVDADLPAEATSRSRQQIEKKRVRRIDPDA--QLDGIPRRLRPQITSLSVGMKKIVTTHGENYIRVWKFR 435

[Close]

BLAST of Cicer_arietinum_v1_Contig162 vs. TrEMBL
Match: B4G123_MAIZE (Putative uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.395e-36
Identity = 82/176 (46.59%), Postives = 117/176 (66.48%), Query Frame = -3

Query:  123 TSGSVTISDPSSAQKVATLRSSD-VRGIRTL--CLGSQLLFAGSAVGYTYCWDMRTRRLMWKTRVSPNVVYSLQHMQSDKSTLAVGGIDGILRFLNQNDGNIVSSCIIDNKLLSTHQSNS-GSIQRRKGKRLPEDTYINIDVIPMTSRPFITCLAVGMKKVVTTHNTRDIRLWKFK 638
            T G+V I+D +S QK+  L+S      IR+L  C  S ++FAGS+ GY +CWD+RT R +W+ RVSPNV+YS +H+  D +TLAVGGIDG+LR + Q  G+I+ S ++D  L +   S S   I++++ +R+  D    +D IP   RP IT L+VGMKK+VTTH    IR+WKF+
Sbjct:  191 TFGNVAIADQTSGQKLGVLKSDHGPLAIRSLSSCTNSHMIFAGSSAGYAHCWDLRTLRPLWEKRVSPNVIYSTRHLPGDTATLAVGGIDGVLRVICQRTGDIIRSLVVDADLPAEATSRSRQQIEKKRVRRIDPDA--QLDGIPRRLRPQITSLSVGMKKIVTTHGENYIRVWKFR 364

[Close]

BLAST of Cicer_arietinum_v1_Contig162 vs. TrEMBL
Match: B4FE95_MAIZE (Putative uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.395e-36
Identity = 82/176 (46.59%), Postives = 117/176 (66.48%), Query Frame = -3

Query:  123 TSGSVTISDPSSAQKVATLRSSD-VRGIRTL--CLGSQLLFAGSAVGYTYCWDMRTRRLMWKTRVSPNVVYSLQHMQSDKSTLAVGGIDGILRFLNQNDGNIVSSCIIDNKLLSTHQSNS-GSIQRRKGKRLPEDTYINIDVIPMTSRPFITCLAVGMKKVVTTHNTRDIRLWKFK 638
            T G+V I+D +S QK+  L+S      IR+L  C  S ++FAGS+ GY +CWD+RT R +W+ RVSPNV+YS +H+  D +TLAVGGIDG+LR + Q  G+I+ S ++D  L +   S S   I++++ +R+  D    +D IP   RP IT L+VGMKK+VTTH    IR+WKF+
Sbjct:  262 TFGNVAIADQTSGQKLGVLKSDHGPLAIRSLSSCTNSHMIFAGSSAGYAHCWDLRTLRPLWEKRVSPNVIYSTRHLPGDTATLAVGGIDGVLRVICQRTGDIIRSLVVDADLPAEATSRSRQQIEKKRVRRIDPDA--QLDGIPRRLRPQITSLSVGMKKIVTTHGENYIRVWKFR 435

[Close]

BLAST of Cicer_arietinum_v1_Contig162 vs. TrEMBL
Match: D7LU16_ARALY (F-box family protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_906562 PE=4 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.380e-36
Identity = 78/173 (45.09%), Postives = 118/173 (68.21%), Query Frame = -3

Query:  126 GSVTISDPSSAQKVATLRSS-DVRGIRTLCL--GSQLLFAGSAVGYTYCWDMRTRRLMWKTRVSPNVVYSLQHMQSDKSTLAVGGIDGILRFLNQNDGNIVSSCIIDNKLLST-HQSNSGSIQRRKGKRLPEDTYINIDVIPMTSRPFITCLAVGMKKVVTTHNTRDIRLWKF 632
            G VT+SDP   Q VATL+S+    GI+T+C   G+ L F G+  GY  CWD+R    +W+ RVSPNVVYS+Q +++D S +  GGIDG+LR ++QN G ++S  I+++K+ +T  + N   I++R+GKR+ +D  + +D I    RP I+C+A+GMKK+VT HN + I +W+F
Sbjct:  274 GRVTVSDPLLDQPVATLKSTITAGGIQTICFNQGTNLAFTGTTGGYVSCWDLRKMGRLWEKRVSPNVVYSIQQLRNDTSVMVAGGIDGVLRVIDQNSGRVLSRFIMEDKVSTTLRRDNQVVIEKRRGKRVSQD--MEMDKIERKVRPQISCIAMGMKKIVTAHNGKCISVWRF 444

[Close]

BLAST of Cicer_arietinum_v1_Contig162 vs. TrEMBL
Match: C5Y675_SORBI (Putative uncharacterized protein Sb05g005350 OS=Sorghum bicolor GN=Sb05g005350 PE=4 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.632e-35
Identity = 80/180 (44.44%), Postives = 115/180 (63.89%), Query Frame = -3

Query:  111 TSGSVTISDPSSAQKVATLRSSDVR-GIRTL--CLGSQLLFAGSAVGYTYCWDMRTRRLMWKTRVSPNVVYSLQHMQSDKSTLAVGGIDGILRFLNQNDGNIVSSCIIDNKLLSTHQSNS-GSIQRRKGKRLPEDTYINIDVIPMTSRPFITCLAVGMKKVVTTHNTRDIRLWKFKDNNT 638
            T GSV I+D +S QK+  L+S+     IR+L  C  S ++FAGS+ GY +CWD+RT R +W+ RVSPNV+YS +H+  D +TLAVGGIDG+LR + Q  G  +   ++D    +   S S   I+++  +R+  D    +D IP   RP IT L+VGMKK+VTTH    IR+WKF+  ++
Sbjct:  262 TFGSVAIADQTSGQKLGVLKSAYAPLAIRSLSFCTNSHMIFAGSSAGYAHCWDLRTLRPLWENRVSPNVIYSTRHLPGDTATLAVGGIDGVLRIICQKTGETIRCLVVDADRPAEAASRSRPQIEKKPVRRIDPDA--QVDSIPRRLRPQITSLSVGMKKIVTTHGENYIRVWKFRPKSS 439

[Close]

BLAST of Cicer_arietinum_v1_Contig162 vs. TrEMBL
Match: Q53MM4_ORYSJ (F-box domain containing protein, expressed OS=Oryza sativa subsp. japonica GN=Os11g0182400 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 8.466e-34
Identity = 78/179 (43.58%), Postives = 113/179 (63.13%), Query Frame = -3

Query:  111 TSGSVTISDPSSAQKVATLRSSDV-RGIRTLCLGSQ--LLFAGSAVGYTYCWDMRTRRLMWKTRVSPNVVYSLQHMQSDKSTLAVGGIDGILRFLNQNDGNIVSSCIIDNKLLSTHQSNSGSIQRRKGKRLPEDTYINIDVIPMTSRPFITCLAVGMKKVVTTHNTRDIRLWKFKDNNT 638
            T G+V I+D +S QK+  L+S+     IR L   +   L+FAGS+ GY +CWD+RT R +W+ RVSPNV+YS  H+  D +TLAVGGIDG+LR + Q  G  + S I+ N       S+   ++++  +++  +    +D IP   RP ITCLAVGMKK+VTTH    IR+WKF+  ++
Sbjct:  263 TFGNVAIADQTSGQKLGVLKSAFAPTAIRCLSFSTSGHLIFAGSSAGYAHCWDLRTLRPLWEKRVSPNVIYSAHHLPGDTATLAVGGIDGVLRLICQRTGETIRSFIV-NADRPAASSSHQQVEKKSVRQVAPNA--RLDNIPTRLRPQITCLAVGMKKIVTTHGENYIRVWKFRPKSS 438

[Close]

BLAST of Cicer_arietinum_v1_Contig162 vs. TAIR peptide
Match: AT3G52030.2 (| Symbols: | F-box family protein with WD40/YVTN repeat doamin | chr3:19301872-19304227 FORWARD LENGTH=433)

HSP 1 Score: 157.147 bits (396), Expect = 7.549e-39
Identity = 80/173 (46.24%), Postives = 117/173 (67.63%), Query Frame = -3

Query:  126 GSVTISDPSSAQKVATLRSS-DVRGIRTLCL--GSQLLFAGSAVGYTYCWDMRTRRLMWKTRVSPNVVYSLQHMQSDKSTLAVGGIDGILRFLNQNDGNIVSSCIIDNKLLSTH-QSNSGSIQRRKGKRLPEDTYINIDVIPMTSRPFITCLAVGMKKVVTTHNTRDIRLWKF 632
            G VT+SDP   Q VATL+S+    GI+T+C   G+ L F G+  GY  CWD+R    +W+ RVSPNVVYS+Q +++D S +  GGIDG+LR ++Q  G ++S  I+D+K  +T  ++N   I++R+GKR+ +D  + ID I    RP I+C+A+GMKK+VT HN + I +WKF
Sbjct:  260 GRVTVSDPLMDQPVATLKSTITAGGIQTICFNQGTNLAFIGTTGGYVSCWDLRKMDRLWEKRVSPNVVYSIQQLRNDTSVMVAGGIDGVLRMIDQKSGRVLSRVIMDDKFSTTSTRNNQVVIEKRRGKRVSQD--MEIDKIERKVRPQISCIAMGMKKMVTAHNGKCISVWKF 430

[Close]

BLAST of Cicer_arietinum_v1_Contig162 vs. TAIR peptide
Match: AT3G52030.1 (| Symbols: | F-box family protein with WD40/YVTN repeat doamin | chr3:19301872-19304227 FORWARD LENGTH=454)

HSP 1 Score: 157.147 bits (396), Expect = 7.549e-39
Identity = 80/173 (46.24%), Postives = 117/173 (67.63%), Query Frame = -3

Query:  126 GSVTISDPSSAQKVATLRSS-DVRGIRTLCL--GSQLLFAGSAVGYTYCWDMRTRRLMWKTRVSPNVVYSLQHMQSDKSTLAVGGIDGILRFLNQNDGNIVSSCIIDNKLLSTH-QSNSGSIQRRKGKRLPEDTYINIDVIPMTSRPFITCLAVGMKKVVTTHNTRDIRLWKF 632
            G VT+SDP   Q VATL+S+    GI+T+C   G+ L F G+  GY  CWD+R    +W+ RVSPNVVYS+Q +++D S +  GGIDG+LR ++Q  G ++S  I+D+K  +T  ++N   I++R+GKR+ +D  + ID I    RP I+C+A+GMKK+VT HN + I +WKF
Sbjct:  281 GRVTVSDPLMDQPVATLKSTITAGGIQTICFNQGTNLAFIGTTGGYVSCWDLRKMDRLWEKRVSPNVVYSIQQLRNDTSVMVAGGIDGVLRMIDQKSGRVLSRVIMDDKFSTTSTRNNQVVIEKRRGKRVSQD--MEIDKIERKVRPQISCIAMGMKKMVTAHNGKCISVWKF 451

The following BLAST results are available for this feature:

BLAST of Cicer_arietinum_v1_Contig162 vs. SwissProt
BLAST of Cicer_arietinum_v1_Contig162 vs. TrEMBL
BLAST of Cicer_arietinum_v1_Contig162 vs. TAIR peptide

BLAST of Cicer_arietinum_v1_Contig162 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 1


Match Name	E-value	Identity	Description
FBW4_ARATH	7.321e-38	46.24	F-box/WD-40 repeat-containing protein At3g52030 OS...	[more]

BLAST of Cicer_arietinum_v1_Contig162 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
B9RVI4_RICCO	7.622e-51	60.12	F-box and wd40 domain protein, putative OS=Ricinus...	[more]
B9HNT8_POPTR	1.437e-49	58.38	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
D7T397_VITVI	5.462e-49	55.93	Whole genome shotgun sequence of line PN40024, sca...	[more]
A5BAL7_VITVI	3.914e-47	55.06	Putative uncharacterized protein OS=Vitis vinifera...	[more]
B6TCZ0_MAIZE	1.395e-36	46.59	F-box domain containing protein OS=Zea mays PE=2 S...	[more]
B4G123_MAIZE	1.395e-36	46.59	Putative uncharacterized protein OS=Zea mays PE=2 ...	[more]
B4FE95_MAIZE	1.395e-36	46.59	Putative uncharacterized protein OS=Zea mays PE=2 ...	[more]
D7LU16_ARALY	2.380e-36	45.09	F-box family protein OS=Arabidopsis lyrata subsp. ...	[more]
C5Y675_SORBI	2.632e-35	44.44	Putative uncharacterized protein Sb05g005350 OS=So...	[more]
Q53MM4_ORYSJ	8.466e-34	43.58	F-box domain containing protein, expressed OS=Oryz...	[more]

BLAST of Cicer_arietinum_v1_Contig162 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 2


Match Name	E-value	Identity	Description
AT3G52030.2	7.549e-39	46.24	\| Symbols: \| F-box family protein with WD40/YVTN ...	[more]
AT3G52030.1	7.549e-39	46.24	\| Symbols: \| F-box family protein with WD40/YVTN ...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011046	WD40 repeat-like-containing domain	SUPERFAMILY	50978	WD40 repeat-like	coord: 10..178 score: 3.3
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	2.130.10.10	no description	coord: 10..182 score: 1.3

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>Cicer_arietinum_v1_Contig162 ID=Cicer_arietinum_v1_Contig162; Name=Cicer_arietinum_v1_Contig162; organism=Cicer arietinum; type=contig; length=664bp
ATTACACAATAAATTGACTATGTAAGAGTGACTTTGTTTTTGTTACACCA
CAGATTATCAGAAACAAATATAAAACAAATAGATTTAAATTCGTAATTTT
ACAACATAAAAGTATTATTGTCTTTGAATTTCCACAATCTGATGTCCCTG
GTATTGTGTGTGGTAACAACCTTCTTCATTCCAACAGCGAGGCATGTAAT
AAAAGGTCGAGAAGTCATAGGAATGACATCAATATTTATGTATGTATCCT
CAGGCAATCTCTTTCCCTTCCTCCTTTGGATGGAGCCTGAATTGCTTTGA
TGTGTTGACAACAATTTATTGTCTATAATACAACTTGAAACAATATTGCC
ATCATTTTGATTTAGAAATCTTAAGATACCATCTATTCCTCCAACAGCCA
AAGTTGACTTGTCACTCTGCATGTGCTGTAAAGAGTACACGACATTAGGA
CTCACTCGTGTCTTCCACATCAGTCTCCTTGTCCTCATGTCCCAACAATA
TGTATACCCAACAGCTGATCCGGCAAACAGTAGTTGAGAGCCTAAACACA
AGGTCCTTATGCCTCTAACATCACTTGATCTTAATGTTGCTACTTTCTGA
GCAGAGGAAGGATCTGATATTGTTACACTCCCTGAAGTGAGCCACTTAGT
ATCAGTTGATCTTC

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR011046	WD40 repeat-like-containing domain
IPR015943	WD40/YVTN_repeat-like_dom_sf

Search form

Cicer_arietinum_v1_Contig162