Cicer_arietinum_v1_Contig1637

Contig Overview


Name	Cicer_arietinum_v1_Contig1637
Unique Name	Cicer_arietinum_v1_Contig1637
Type	contig
Organism	Cicer arietinum (chickpea)
Sequence length	625

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
GR407652	EST	GR407652:1..347 +	Cicer arietinum unigene v1	n/a
FE670671	EST	FE670671:8..625 +	Cicer arietinum unigene v1	n/a

Unigenes

This contig is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	contig

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide	2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Relationships

The following EST feature(s) are a part of this contig:


Feature Name	Unique Name	Species	Type
GR407652	GR407652	Cicer arietinum	EST
FE670671	FE670671	Cicer arietinum	EST

Homology

[Close]

BLAST of Cicer_arietinum_v1_Contig1637 vs. SwissProt
Match: YDC1_SCHPO (Uncharacterized RNA-binding protein C25G10.01 OS=Schizosaccharomyces pombe GN=SPAC25G10.01 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.029e-11
Identity = 33/81 (40.74%), Postives = 55/81 (67.90%), Query Frame = 2

Query:  185 AENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRASRGFGFVTMETLEEADRCVKYLDRSVLEGRVIMVEK 427
            +EN GN+L+V+G++ R+ + EL++ F+  G V  V ++ +P T+ASRGFGF++  T+EEA   +  L+     GRV+ V+K
Sbjct:   96 SENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQK 176

[Close]

BLAST of Cicer_arietinum_v1_Contig1637 vs. SwissProt
Match: SAFB2_MOUSE (Scaffold attachment factor B2 OS=Mus musculus GN=Safb2 PE=1 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 1.531e-10
Identity = 33/77 (42.86%), Postives = 49/77 (63.64%), Query Frame = 2

Query:  197 GNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRASRGFGFVTMETLEEADRCVKYLDRSVLEGRVIMVEK 427
            G NL+V+GLS      +L+  F+  GKVI   +V +  +  +R +GFVTM T +EA +C+ +L R+ L GR+I VEK
Sbjct:  450 GRNLWVSGLSSSTRAADLKSLFSKHGKVIGAKVVTNARSPGARCYGFVTMSTSDEATKCISHLHRTELHGRMISVEK 526

[Close]

BLAST of Cicer_arietinum_v1_Contig1637 vs. SwissProt
Match: SAFB2_HUMAN (Scaffold attachment factor B2 OS=Homo sapiens GN=SAFB2 PE=1 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 3.411e-10
Identity = 32/77 (41.56%), Postives = 49/77 (63.64%), Query Frame = 2

Query:  197 GNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRASRGFGFVTMETLEEADRCVKYLDRSVLEGRVIMVEK 427
            G NL+V+GLS      +L+  F+  GKV+   +V +  +  +R +GFVTM T +EA +C+ +L R+ L GR+I VEK
Sbjct:  406 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSDEATKCISHLHRTELHGRMISVEK 482

[Close]

BLAST of Cicer_arietinum_v1_Contig1637 vs. SwissProt
Match: SAFB1_RAT (Scaffold attachment factor B1 OS=Rattus norvegicus GN=Safb PE=1 SV=2)

HSP 1 Score: 62.7734 bits (151), Expect = 1.693e-9
Identity = 30/77 (38.96%), Postives = 48/77 (62.34%), Query Frame = 2

Query:  197 GNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRASRGFGFVTMETLEEADRCVKYLDRSVLEGRVIMVEK 427
            G N +V+GLS      +L+  F+  GKV+   +V +  +  +R +GFVTM T EEA +C+ +L ++ L G++I VEK
Sbjct:  427 GRNFWVSGLSSTTRATDLKNLFSRYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLHKTELHGKMISVEK 503

[Close]

BLAST of Cicer_arietinum_v1_Contig1637 vs. SwissProt
Match: SAFB1_PONAB (Scaffold attachment factor B1 OS=Pongo abelii GN=SAFB PE=2 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 1.693e-9
Identity = 30/77 (38.96%), Postives = 48/77 (62.34%), Query Frame = 2

Query:  197 GNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRASRGFGFVTMETLEEADRCVKYLDRSVLEGRVIMVEK 427
            G N +V+GLS      +L+  F+  GKV+   +V +  +  +R +GFVTM T EEA +C+ +L ++ L G++I VEK
Sbjct:  405 GRNFWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLHKTELHGKMISVEK 481

[Close]

BLAST of Cicer_arietinum_v1_Contig1637 vs. SwissProt
Match: SAFB1_HUMAN (Scaffold attachment factor B1 OS=Homo sapiens GN=SAFB PE=1 SV=4)

HSP 1 Score: 62.7734 bits (151), Expect = 1.693e-9
Identity = 30/77 (38.96%), Postives = 48/77 (62.34%), Query Frame = 2

Query:  197 GNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRASRGFGFVTMETLEEADRCVKYLDRSVLEGRVIMVEK 427
            G N +V+GLS      +L+  F+  GKV+   +V +  +  +R +GFVTM T EEA +C+ +L ++ L G++I VEK
Sbjct:  405 GRNFWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLHKTELHGKMISVEK 481

[Close]

BLAST of Cicer_arietinum_v1_Contig1637 vs. SwissProt
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 4.170e-8
Identity = 29/77 (37.66%), Postives = 46/77 (59.74%), Query Frame = 2

Query:  197 GNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRASRGFGFVTMETLEEADRCVKYLDRSVLEGRVIMVEK 427
            GN +YV  LS  +    LE  F+ +GKV++  ++ D  +  S+GFGFVT ++ +E    +K LD + L+GR I V +
Sbjct:  203 GNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSE 279

[Close]

BLAST of Cicer_arietinum_v1_Contig1637 vs. SwissProt
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 5.446e-8
Identity = 31/76 (40.79%), Postives = 42/76 (55.26%), Query Frame = 2

Query:  194 PGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRASRGFGFVTMETLEEADRCVKYLDRSVLEGRVIMV 421
            P   +YV  L   +    LE+ F+  GKV++  +V D  T  SRGFGFVTM  ++E +  +  LD   LEGR I V
Sbjct:  242 PAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRV 317

[Close]

BLAST of Cicer_arietinum_v1_Contig1637 vs. SwissProt
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 1.213e-7
Identity = 31/75 (41.33%), Postives = 42/75 (56.00%), Query Frame = 2

Query:  197 GNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRASRGFGFVTMETLEEADRCVKYLDRSVLEGRVIMV 421
            G  LYV  L   +T  +L + FA  G V +V +V D  T  SRGF FVTM ++EEA   ++  D S + GR + V
Sbjct:  113 GGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKV 187

[Close]

BLAST of Cicer_arietinum_v1_Contig1637 vs. SwissProt
Match: SLTM_MOUSE (SAFB-like transcription modulator OS=Mus musculus GN=Sltm PE=1 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 2.069e-7
Identity = 28/76 (36.84%), Postives = 45/76 (59.21%), Query Frame = 2

Query:  203 NLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRASRGFGFVTMETLEEADRCVKYLDRSVLEGRVIMVEKV 430
            N++V+GLS      +L+  F   GKV+   +V +  +  ++ +G VTM +  E  RCV +L R+ L G++I VEKV
Sbjct:  385 NIWVSGLSSNTKAADLKNLFGKYGKVLSAKVVTNARSPGAKCYGIVTMSSSTEVSRCVAHLHRTELHGQLISVEKV 460

[Close]

BLAST of Cicer_arietinum_v1_Contig1637 vs. TrEMBL
Match: B9S368_RICCO (FUS-interacting serine-arginine-rich protein 1, putative OS=Ricinus communis GN=RCOM_0730610 PE=4 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.357e-35
Identity = 73/82 (89.02%), Postives = 77/82 (93.90%), Query Frame = 2

Query:  182 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRASRGFGFVTMETLEEADRCVKYLDRSVLEGRVIMVEK 427
            D ENPGNNLYVTGLSPRITKR+LEKHFA+EGKVIDVHLVVDPWTR SRGFGFVTM TL EADRC+KYL+RSVLEGRVI VEK
Sbjct:   41 DVENPGNNLYVTGLSPRITKRDLEKHFASEGKVIDVHLVVDPWTRESRGFGFVTMSTLVEADRCIKYLNRSVLEGRVITVEK 122

[Close]

BLAST of Cicer_arietinum_v1_Contig1637 vs. TrEMBL
Match: B9HP82_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_833248 PE=4 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.315e-35
Identity = 72/82 (87.80%), Postives = 76/82 (92.68%), Query Frame = 2

Query:  182 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRASRGFGFVTMETLEEADRCVKYLDRSVLEGRVIMVEK 427
            D ENPGNNLYVTGLSPRITK+ELEKHF+AEG VIDVHLVVDPWTR SRGFGFVTM T+EEAD C+KYLDRSVLEGRVI VEK
Sbjct:   46 DVENPGNNLYVTGLSPRITKKELEKHFSAEGTVIDVHLVVDPWTRESRGFGFVTMSTVEEADHCIKYLDRSVLEGRVITVEK 127

[Close]

BLAST of Cicer_arietinum_v1_Contig1637 vs. TrEMBL
Match: D7SK34_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_4.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00024805001 PE=4 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 9.726e-34
Identity = 69/83 (83.13%), Postives = 75/83 (90.36%), Query Frame = 2

Query:  182 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRASRGFGFVTMETLEEADRCVKYLDRSVLEGRVIMVEKV 430
            + ENPGNNLYVTGLS R+TKRELEKHFA+EG V DVHLV DPWTR SRGFGFVTM T+EEA+RC+KYLDRSVLEGRVI VEKV
Sbjct:   43 EVENPGNNLYVTGLSTRVTKRELEKHFASEGSVADVHLVTDPWTRESRGFGFVTMSTVEEANRCIKYLDRSVLEGRVITVEKV 125

[Close]

BLAST of Cicer_arietinum_v1_Contig1637 vs. TrEMBL
Match: A5BKD3_VITVI (Putative uncharacterized protein (Fragment) OS=Vitis vinifera GN=VITISV_029585 PE=4 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.830e-33
Identity = 68/82 (82.93%), Postives = 74/82 (90.24%), Query Frame = 2

Query:  182 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRASRGFGFVTMETLEEADRCVKYLDRSVLEGRVIMVEK 427
            + ENPGNNLYVTGLS R+TKRELEKHFA+EG V DVHLV DPWTR SRGFGFVTM T+EEA+RC+KYLDRSVLEGRVI VEK
Sbjct:   43 EVENPGNNLYVTGLSTRVTKRELEKHFASEGSVADVHLVTDPWTRESRGFGFVTMSTVEEANRCIKYLDRSVLEGRVITVEK 124

[Close]

BLAST of Cicer_arietinum_v1_Contig1637 vs. TrEMBL
Match: B2BXR9_9ROSI (PutRNAbp29 OS=Cleome spinosa PE=4 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.970e-32
Identity = 64/82 (78.05%), Postives = 76/82 (92.68%), Query Frame = 2

Query:  182 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRASRGFGFVTMETLEEADRCVKYLDRSVLEGRVIMVEK 427
            DAENPGN+LYVTGLS R+TKR+LE HF+ EGKV+DV+LV+DPWTR SRGFGFVTME +E+A+RC+KYLDRSVLEGR+I VEK
Sbjct:   38 DAENPGNSLYVTGLSHRVTKRDLEDHFSKEGKVVDVNLVLDPWTRESRGFGFVTMENMEDANRCIKYLDRSVLEGRIITVEK 119

[Close]

BLAST of Cicer_arietinum_v1_Contig1637 vs. TrEMBL
Match: Q0DT74_ORYSJ (Os03g0265600 protein OS=Oryza sativa subsp. japonica GN=Os03g0265600 PE=4 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.518e-31
Identity = 64/83 (77.11%), Postives = 74/83 (89.16%), Query Frame = 2

Query:  182 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRASRGFGFVTMETLEEADRCVKYLDRSVLEGRVIMVEKV 430
            D ENPGNNLYVTGLS R+T R+LEKHF+AEG+VID  +V+DPWTR SRGFGFVTM T++EAD C+KYLDRSVLEGRVI VEK+
Sbjct:   37 DVENPGNNLYVTGLSARVTDRDLEKHFSAEGEVIDASIVLDPWTRESRGFGFVTMATVKEADLCIKYLDRSVLEGRVITVEKL 119

[Close]

BLAST of Cicer_arietinum_v1_Contig1637 vs. TrEMBL
Match: Q84QA6_ORYSJ (Putative transformer serine/arginine-rich ribonucleoprotein OS=Oryza sativa subsp. japonica GN=OJ1012B02.15 PE=4 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.900e-31
Identity = 64/82 (78.05%), Postives = 73/82 (89.02%), Query Frame = 2

Query:  182 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRASRGFGFVTMETLEEADRCVKYLDRSVLEGRVIMVEK 427
            D ENPGNNLYVTGLS R+T R+LEKHF+AEG+VID  +V+DPWTR SRGFGFVTM T++EAD C+KYLDRSVLEGRVI VEK
Sbjct:   14 DVENPGNNLYVTGLSARVTDRDLEKHFSAEGEVIDASIVLDPWTRESRGFGFVTMATVKEADLCIKYLDRSVLEGRVITVEK 95

[Close]

BLAST of Cicer_arietinum_v1_Contig1637 vs. TrEMBL
Match: Q10NM3_ORYSJ (RNA recognition motif family protein, expressed OS=Oryza sativa subsp. japonica GN=LOC_Os03g15890 PE=4 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.900e-31
Identity = 64/82 (78.05%), Postives = 73/82 (89.02%), Query Frame = 2

Query:  182 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRASRGFGFVTMETLEEADRCVKYLDRSVLEGRVIMVEK 427
            D ENPGNNLYVTGLS R+T R+LEKHF+AEG+VID  +V+DPWTR SRGFGFVTM T++EAD C+KYLDRSVLEGRVI VEK
Sbjct:   36 DVENPGNNLYVTGLSARVTDRDLEKHFSAEGEVIDASIVLDPWTRESRGFGFVTMATVKEADLCIKYLDRSVLEGRVITVEK 117

[Close]

BLAST of Cicer_arietinum_v1_Contig1637 vs. TrEMBL
Match: Q10NM2_ORYSJ (RNA recognition motif family protein, expressed OS=Oryza sativa subsp. japonica GN=LOC_Os03g15890 PE=4 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.900e-31
Identity = 64/82 (78.05%), Postives = 73/82 (89.02%), Query Frame = 2

Query:  182 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRASRGFGFVTMETLEEADRCVKYLDRSVLEGRVIMVEK 427
            D ENPGNNLYVTGLS R+T R+LEKHF+AEG+VID  +V+DPWTR SRGFGFVTM T++EAD C+KYLDRSVLEGRVI VEK
Sbjct:   37 DVENPGNNLYVTGLSARVTDRDLEKHFSAEGEVIDASIVLDPWTRESRGFGFVTMATVKEADLCIKYLDRSVLEGRVITVEK 118

[Close]

BLAST of Cicer_arietinum_v1_Contig1637 vs. TrEMBL
Match: B9GIV6_POPTR (Predicted protein (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_172430 PE=4 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.900e-31
Identity = 66/76 (86.84%), Postives = 69/76 (90.79%), Query Frame = 2

Query:  182 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRASRGFGFVTMETLEEADRCVKYLDRSVLEGR 409
            D ENPGNNLYVTGLSPRITK+ELEKHFAAEG VIDVHLVVDP TR SRGFGFVTM  +EEADRC+KYLDRSVL GR
Sbjct:    6 DVENPGNNLYVTGLSPRITKKELEKHFAAEGTVIDVHLVVDPLTRESRGFGFVTMSAVEEADRCIKYLDRSVLGGR 81

[Close]

BLAST of Cicer_arietinum_v1_Contig1637 vs. TAIR peptide
Match: AT1G07350.2 (| Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:2258816-2259586 REVERSE LENGTH=129)

HSP 1 Score: 128.257 bits (321), Expect = 3.392e-30
Identity = 58/82 (70.73%), Postives = 73/82 (89.02%), Query Frame = 2

Query:  182 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRASRGFGFVTMETLEEADRCVKYLDRSVLEGRVIMVEK 427
            DAENPGN+LYVTGLS R+T+R+LE HFA EGKV DVHLV+DPWTR SRGFGF++M+++ +A+RC++ LD SVL+GRVI VEK
Sbjct:   39 DAENPGNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVEK 120

[Close]

BLAST of Cicer_arietinum_v1_Contig1637 vs. TAIR peptide
Match: AT1G07350.1 (| Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:2257732-2260101 REVERSE LENGTH=382)

HSP 1 Score: 128.257 bits (321), Expect = 3.392e-30
Identity = 58/82 (70.73%), Postives = 73/82 (89.02%), Query Frame = 2

Query:  182 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRASRGFGFVTMETLEEADRCVKYLDRSVLEGRVIMVEK 427
            DAENPGN+LYVTGLS R+T+R+LE HFA EGKV DVHLV+DPWTR SRGFGF++M+++ +A+RC++ LD SVL+GRVI VEK
Sbjct:   69 DAENPGNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVEK 150

[Close]

BLAST of Cicer_arietinum_v1_Contig1637 vs. TAIR peptide
Match: AT4G35785.5 (| Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr4:16953404-16955127 REVERSE LENGTH=244)

HSP 1 Score: 109.768 bits (273), Expect = 1.248e-24
Identity = 51/82 (62.20%), Postives = 65/82 (79.27%), Query Frame = 2

Query:  182 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRASRGFGFVTMETLEEADRCVKYLDRSVLEGRVIMVEK 427
            + ENPG  LYVTGLS R+T ++LE HFA EGKV    LV++P TR SRGF FVTM +L++A+RC+KYL++SVLEGR I VE+
Sbjct:   80 EVENPGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYLNQSVLEGRYITVER 161

[Close]

BLAST of Cicer_arietinum_v1_Contig1637 vs. TAIR peptide
Match: AT4G35785.4 (| Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr4:16953404-16955127 REVERSE LENGTH=201)

HSP 1 Score: 109.768 bits (273), Expect = 1.248e-24
Identity = 51/82 (62.20%), Postives = 65/82 (79.27%), Query Frame = 2

Query:  182 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRASRGFGFVTMETLEEADRCVKYLDRSVLEGRVIMVEK 427
            + ENPG  LYVTGLS R+T ++LE HFA EGKV    LV++P TR SRGF FVTM +L++A+RC+KYL++SVLEGR I VE+
Sbjct:   80 EVENPGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYLNQSVLEGRYITVER 161

[Close]

BLAST of Cicer_arietinum_v1_Contig1637 vs. TAIR peptide
Match: AT4G35785.3 (| Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr4:16953708-16955127 REVERSE LENGTH=207)

HSP 1 Score: 109.768 bits (273), Expect = 1.248e-24
Identity = 51/82 (62.20%), Postives = 65/82 (79.27%), Query Frame = 2

Query:  182 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRASRGFGFVTMETLEEADRCVKYLDRSVLEGRVIMVEK 427
            + ENPG  LYVTGLS R+T ++LE HFA EGKV    LV++P TR SRGF FVTM +L++A+RC+KYL++SVLEGR I VE+
Sbjct:   66 EVENPGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYLNQSVLEGRYITVER 147

[Close]

BLAST of Cicer_arietinum_v1_Contig1637 vs. TAIR peptide
Match: AT4G35785.2 (| Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr4:16953211-16955127 REVERSE LENGTH=239)

HSP 1 Score: 109.768 bits (273), Expect = 1.248e-24
Identity = 51/82 (62.20%), Postives = 65/82 (79.27%), Query Frame = 2

Query:  182 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRASRGFGFVTMETLEEADRCVKYLDRSVLEGRVIMVEK 427
            + ENPG  LYVTGLS R+T ++LE HFA EGKV    LV++P TR SRGF FVTM +L++A+RC+KYL++SVLEGR I VE+
Sbjct:   66 EVENPGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYLNQSVLEGRYITVER 147

[Close]

BLAST of Cicer_arietinum_v1_Contig1637 vs. TAIR peptide
Match: AT4G35785.1 (| Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr4:16953211-16955127 REVERSE LENGTH=238)

HSP 1 Score: 109.768 bits (273), Expect = 1.248e-24
Identity = 51/82 (62.20%), Postives = 65/82 (79.27%), Query Frame = 2

Query:  182 DAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRASRGFGFVTMETLEEADRCVKYLDRSVLEGRVIMVEK 427
            + ENPG  LYVTGLS R+T ++LE HFA EGKV    LV++P TR SRGF FVTM +L++A+RC+KYL++SVLEGR I VE+
Sbjct:   65 EVENPGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYLNQSVLEGRYITVER 146

[Close]

BLAST of Cicer_arietinum_v1_Contig1637 vs. TAIR peptide
Match: AT3G52380.1 (| Symbols: CP33, PDE322 | chloroplast RNA-binding protein 33 | chr3:19421619-19422855 FORWARD LENGTH=329)

HSP 1 Score: 60.077 bits (144), Expect = 1.134e-9
Identity = 33/79 (41.77%), Postives = 43/79 (54.43%), Query Frame = 2

Query:  185 AENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRASRGFGFVTMETLEEADRCVKYLDRSVLEGRVIMV 421
            A      LYV  L   IT  EL + F   G V+DV +V D  T  SRGFGFVTM ++EEA   ++  + S + GR + V
Sbjct:  111 ASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKV 189

[Close]

BLAST of Cicer_arietinum_v1_Contig1637 vs. TAIR peptide
Match: AT5G54580.1 (| Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:22171332-22172656 FORWARD LENGTH=156)

HSP 1 Score: 58.9214 bits (141), Expect = 2.527e-9
Identity = 32/77 (41.56%), Postives = 44/77 (57.14%), Query Frame = 2

Query:  194 PGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRASRGFGFVTMETLEEADRCVKYLDRSVLEGRVIMVE 424
            P  NL+V+GLS R T   L   FA  G+V D  +V D  +  S+GFGFV   TLE++ + +  +D   L+G VI  E
Sbjct:   54 PSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGMDGKFLDGWVIFAE 130

[Close]

BLAST of Cicer_arietinum_v1_Contig1637 vs. TAIR peptide
Match: AT2G37220.1 (| Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr2:15634980-15636331 REVERSE LENGTH=289)

HSP 1 Score: 58.151 bits (139), Expect = 4.311e-9
Identity = 29/77 (37.66%), Postives = 46/77 (59.74%), Query Frame = 2

Query:  197 GNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRASRGFGFVTMETLEEADRCVKYLDRSVLEGRVIMVEK 427
            GN +YV  LS  +    LE  F+ +GKV++  ++ D  +  S+GFGFVT ++ +E    +K LD + L+GR I V +
Sbjct:  203 GNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSE 279

The following BLAST results are available for this feature:

BLAST of Cicer_arietinum_v1_Contig1637 vs. SwissProt
BLAST of Cicer_arietinum_v1_Contig1637 vs. TrEMBL
BLAST of Cicer_arietinum_v1_Contig1637 vs. TAIR peptide

BLAST of Cicer_arietinum_v1_Contig1637 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 10


Match Name	E-value	Identity	Description
YDC1_SCHPO	4.029e-11	40.74	Uncharacterized RNA-binding protein C25G10.01 OS=S...	[more]
SAFB2_MOUSE	1.531e-10	42.86	Scaffold attachment factor B2 OS=Mus musculus GN=S...	[more]
SAFB2_HUMAN	3.411e-10	41.56	Scaffold attachment factor B2 OS=Homo sapiens GN=S...	[more]
SAFB1_RAT	1.693e-9	38.96	Scaffold attachment factor B1 OS=Rattus norvegicus...	[more]
SAFB1_PONAB	1.693e-9	38.96	Scaffold attachment factor B1 OS=Pongo abelii GN=S...	[more]
SAFB1_HUMAN	1.693e-9	38.96	Scaffold attachment factor B1 OS=Homo sapiens GN=S...	[more]
ROC1_ARATH	4.170e-8	37.66	Ribonucleoprotein At2g37220, chloroplastic OS=Arab...	[more]
ROC3_ARATH	5.446e-8	40.79	31 kDa ribonucleoprotein, chloroplastic OS=Arabido...	[more]
ROC5_NICSY	1.213e-7	41.33	33 kDa ribonucleoprotein, chloroplastic OS=Nicotia...	[more]
SLTM_MOUSE	2.069e-7	36.84	SAFB-like transcription modulator OS=Mus musculus ...	[more]

BLAST of Cicer_arietinum_v1_Contig1637 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
B9S368_RICCO	1.357e-35	89.02	FUS-interacting serine-arginine-rich protein 1, pu...	[more]
B9HP82_POPTR	2.315e-35	87.80	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
D7SK34_VITVI	9.726e-34	83.13	Whole genome shotgun sequence of line PN40024, sca...	[more]
A5BKD3_VITVI	2.830e-33	82.93	Putative uncharacterized protein (Fragment) OS=Vit...	[more]
B2BXR9_9ROSI	6.970e-32	78.05	PutRNAbp29 OS=Cleome spinosa PE=4 SV=1	[more]
Q0DT74_ORYSJ	4.518e-31	77.11	Os03g0265600 protein OS=Oryza sativa subsp. japoni...	[more]
Q84QA6_ORYSJ	5.900e-31	78.05	Putative transformer serine/arginine-rich ribonucl...	[more]
Q10NM3_ORYSJ	5.900e-31	78.05	RNA recognition motif family protein, expressed OS...	[more]
Q10NM2_ORYSJ	5.900e-31	78.05	RNA recognition motif family protein, expressed OS...	[more]
B9GIV6_POPTR	5.900e-31	86.84	Predicted protein (Fragment) OS=Populus trichocarp...	[more]

BLAST of Cicer_arietinum_v1_Contig1637 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 10


Match Name	E-value	Identity	Description
AT1G07350.2	3.392e-30	70.73	\| Symbols: \| RNA-binding (RRM/RBD/RNP motifs) fam...	[more]
AT1G07350.1	3.392e-30	70.73	\| Symbols: \| RNA-binding (RRM/RBD/RNP motifs) fam...	[more]
AT4G35785.5	1.248e-24	62.20	\| Symbols: \| RNA-binding (RRM/RBD/RNP motifs) fam...	[more]
AT4G35785.4	1.248e-24	62.20	\| Symbols: \| RNA-binding (RRM/RBD/RNP motifs) fam...	[more]
AT4G35785.3	1.248e-24	62.20	\| Symbols: \| RNA-binding (RRM/RBD/RNP motifs) fam...	[more]
AT4G35785.2	1.248e-24	62.20	\| Symbols: \| RNA-binding (RRM/RBD/RNP motifs) fam...	[more]
AT4G35785.1	1.248e-24	62.20	\| Symbols: \| RNA-binding (RRM/RBD/RNP motifs) fam...	[more]
AT3G52380.1	1.134e-9	41.77	\| Symbols: CP33, PDE322 \| chloroplast RNA-binding ...	[more]
AT5G54580.1	2.527e-9	41.56	\| Symbols: \| RNA-binding (RRM/RBD/RNP motifs) fam...	[more]
AT2G37220.1	4.311e-9	37.66	\| Symbols: \| RNA-binding (RRM/RBD/RNP motifs) fam...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 69..138 score: 9.4
IPR000504	RNA recognition motif domain	SMART	SM00360	no description	coord: 68..141 score: 1
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 67..145 score: 15
IPR012677	Nucleotide-binding, alpha-beta plait	GENE3D	3.30.70.330	no description	coord: 46..142 score: 3.7
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 63..142 score: 2.7
None	No IPR available	SEG	seg	seg	coord: 19..60 score
None	No IPR available	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 22..142 score: 5.2
None	No IPR available	SEG	seg	seg	coord: 96..136 score

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>Cicer_arietinum_v1_Contig1637 ID=Cicer_arietinum_v1_Contig1637; Name=Cicer_arietinum_v1_Contig1637; organism=Cicer arietinum; type=contig; length=625bp
TGCGTTGATTCTCCATATTAGAGAACACCGATTTCTCTCATTTTCTGCTA
TAATGTCGTATTCTCGGAGATCAAGGTATTCTCCCTCTCCTTCCCTCTCT
CCATACAGGCGATACAGTAGGTCTGTGTCCAGGTCTCTTTCAAGGTCGAG
ATCCAGAAGCCGATCAAGGAGCGCATCACGAGATGCAGAAAATCCGGGAA
ACAATTTGTATGTGACAGGATTGTCTCCTAGGATCACCAAGAGAGAACTG
GAGAAGCATTTTGCTGCTGAAGGAAAAGTGATAGATGTCCATCTGGTTGT
TGATCCATGGACAAGGGCATCCCGTGGTTTTGGATTTGTGACAATGGAGA
CTTTAGAAGAAGCTGATCGATGTGTTAAGTATCTGGATCGCTCTGTACTT
GAAGGCCGTGTTATCATGGTGGAGAAGGTTANCTGTGTGAAGCAGCCCTT
CATCAAACTCTCAAATCACAACTAAACAAACAAATCAAATACATCAACAA
GTATCAGATCGTTGGGGTTGTATGCCCTGCATTTCCCTCTTTTATATTTC
TTGCATTTATATCTTGTTATTCAACGTACCCTTAGTATTTAAGGCTATCA
TTAAGACCCTGCTCTGACAAATGCT

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

Search form

Cicer_arietinum_v1_Contig1637