Cicer_arietinum_v1_Contig1682

Contig Overview
NameCicer_arietinum_v1_Contig1682
Unique NameCicer_arietinum_v1_Contig1682
Typecontig
OrganismCicer arietinum (chickpea)
Sequence length519
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
GR393310ESTGR393310:1..336 +Cicer arietinum unigene v1n/a
GR392138ESTGR392138:1..340 +Cicer arietinum unigene v1n/a
GR406166ESTGR406166:5..453 +Cicer arietinum unigene v1n/a
GR407417ESTGR407417:1..512 +Cicer arietinum unigene v1n/a
FE672589ESTFE672589:9..506 +Cicer arietinum unigene v1n/a
GR398441ESTGR398441:1..515 +Cicer arietinum unigene v1n/a
GR397868ESTGR397868:2..515 +Cicer arietinum unigene v1n/a
GR397857ESTGR397857:1..515 +Cicer arietinum unigene v1n/a
FE670606ESTFE670606:20..512 +Cicer arietinum unigene v1n/a
FE668731ESTFE668731:19..515 +Cicer arietinum unigene v1n/a
GR397656ESTGR397656:5..513 +Cicer arietinum unigene v1n/a
GR392501ESTGR392501:5..515 +Cicer arietinum unigene v1n/a
GR390996ESTGR390996:347..523 +Cicer arietinum unigene v1n/a
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Cicer arietinum unigene v1Cicer arietinum unigene v1contig
Analyses
This contig is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum unigene v12010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs Trembl2010-12-28
InterProScan analysis for Cicer arietinum unigene v12010-12-29
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
GR393310GR393310Cicer arietinumEST
GR392138GR392138Cicer arietinumEST
GR406166GR406166Cicer arietinumEST
GR407417GR407417Cicer arietinumEST
FE672589FE672589Cicer arietinumEST
GR398441GR398441Cicer arietinumEST
GR397868GR397868Cicer arietinumEST
GR397857GR397857Cicer arietinumEST
FE670606FE670606Cicer arietinumEST
FE668731FE668731Cicer arietinumEST
GR397656GR397656Cicer arietinumEST
GR392501GR392501Cicer arietinumEST
GR390996GR390996Cicer arietinumEST


Homology
BLAST of Cicer_arietinum_v1_Contig1682 vs. TrEMBL
Match: Q2HTZ6_MEDTR (Putative uncharacterized protein OS=Medicago truncatula GN=MtrDRAFT_AC149577g11v1 PE=4 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 5.444e-24
Identity = 54/75 (72.00%), Postives = 58/75 (77.33%), Query Frame = 2
Query:   74 DNHQQAP-VSYPGPGEAYSTGQYVTAPPPMGYPSKEGTEGYPQQRIQDQTTSRGDGFWKGXXXXXXXXXXXDICF 295
            +N Q+AP VSYP PGEAYST QYVTAPPPMGYPSK+G+ GYPQQRI DQTTSRGDGFWKG           DICF
Sbjct:    6 NNQQKAPSVSYPPPGEAYSTPQYVTAPPPMGYPSKDGSAGYPQQRIPDQTTSRGDGFWKGCCAALCCCCALDICF 80          
BLAST of Cicer_arietinum_v1_Contig1682 vs. TrEMBL
Match: C6SYK8_SOYBN (Putative uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.310e-13
Identity = 38/64 (59.38%), Postives = 47/64 (73.44%), Query Frame = 2
Query:   62 MTHFDNHQQ-APVSYPGPGEAYSTGQYVTAPPPMGYPSKEGTEGYPQQRIQDQTTSRGDGFWKG 250
            M H  N+QQ  P+SY   G+A S+  YVTAPPPMGYPSK G+    +QR+ ++TTSRGDGFWKG
Sbjct:    1 MNHSSNNQQETPLSYLPEGQANSSAPYVTAPPPMGYPSKNGS---IEQRVPEETTSRGDGFWKG 61          
BLAST of Cicer_arietinum_v1_Contig1682 vs. TrEMBL
Match: C6T3A6_SOYBN (Putative uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 1.591e-7
Identity = 30/64 (46.88%), Postives = 40/64 (62.50%), Query Frame = 2
Query:   65 THFDNHQQAPVSYPGPGEAYSTGQYVTAPPPMGYPSKEGTE--GYPQQRIQDQTTSRGDGFWKG 250
            +H +  Q+APVSYP P          +A P MG PSK+G    GY QQR+ ++T +RGDGFW+G
Sbjct:    3 SHSNIEQEAPVSYPAP----------SATPHMGCPSKDGPAAVGYTQQRLPEETKTRGDGFWEG 56          
BLAST of Cicer_arietinum_v1_Contig1682 vs. TrEMBL
Match: B9S4X9_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1392400 PE=4 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 3.545e-7
Identity = 27/72 (37.50%), Postives = 34/72 (47.22%), Query Frame = 2
Query:   80 HQQAPVSYPGPGEAYSTGQYVTAPPPMGYPSKEGTEGYPQQRIQDQTTSRGDGFWKGXXXXXXXXXXXDICF 295
            +Q     YP    A +   YV  PPP GYP+K+G      Q +  +T S+GDGFWKG           D CF
Sbjct:    4 NQATAYPYPPSSTAAAADAYVAPPPPAGYPTKDGLNQAYSQSVPVETKSKGDGFWKGCCAALCCCCVLDACF 75          
The following BLAST results are available for this feature:
BLAST of Cicer_arietinum_v1_Contig1682 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 4
Match NameE-valueIdentityDescription
Q2HTZ6_MEDTR5.444e-2472.00Putative uncharacterized protein OS=Medicago trunc... [more]
C6SYK8_SOYBN3.310e-1359.38Putative uncharacterized protein OS=Glycine max PE... [more]
C6T3A6_SOYBN1.591e-746.88Putative uncharacterized protein OS=Glycine max PE... [more]
B9S4X9_RICCO3.545e-737.50Putative uncharacterized protein OS=Ricinus commun... [more]
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InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 84..94
score

Sequences
The following sequences are available for this feature:

contig sequence

>Cicer_arietinum_v1_Contig1682 ID=Cicer_arietinum_v1_Contig1682; Name=Cicer_arietinum_v1_Contig1682; organism=Cicer arietinum; type=contig; length=519bp
GAATCACATAACTTCCAATTCCTCTCGTCCTTCAATTCTCTTTCATAATT
TTATCTTCATCATGACTCACTTCGATAATCACCAACAAGCCCCTGTATCA
TATCCAGGACCAGGTGAGGCCTATTCGACAGGTCAATATGTTACTGCCCC
ACCACCTATGGGTTATCCTTCCAAAGAGGGTACTGAAGGGTACCCCCAAC
AAAGGATTCAAGATCAAACCACAAGCAGGGGTGATGGTTTCTGGAAAGGA
TGTTGTGCTGCTCTATGTTGCTGCTGTGCACTGGATATTTGCTTTTAAGT
TCTGATTGAATCATACAAACATATTGTGCTTTTTGAAACTACAATTTGTT
AACCCTATTGTATTCTTTGTAATTTGTAGACGAATAAGGATTTTTTATCT
TTCTAGAGATTATGTATTTGTGTCCATTTGATGGATGTTATTTGTTTACC
TTGTGTATTTGAAACTTTGTATGTGATGTATTTAGTCATTTGTAATATAT
TTTTTGTCAATAAAAAAAA
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