Cicer_arietinum_v1_Contig1735

Contig Overview


Name	Cicer_arietinum_v1_Contig1735
Unique Name	Cicer_arietinum_v1_Contig1735
Type	contig
Organism	Cicer arietinum (chickpea)
Sequence length	534

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
GR397936	EST	GR397936:1..125 +	Cicer arietinum unigene v1	n/a
GR406872	EST	GR406872:1..348 +	Cicer arietinum unigene v1	n/a
GR393646	EST	GR393646:1..314 +	Cicer arietinum unigene v1	n/a
GR393388	EST	GR393388:200..534 -	Cicer arietinum unigene v1	n/a

Unigenes

This contig is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	contig

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide	2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Relationships

The following EST feature(s) are a part of this contig:


Feature Name	Unique Name	Species	Type
GR397936	GR397936	Cicer arietinum	EST
GR406872	GR406872	Cicer arietinum	EST
GR393646	GR393646	Cicer arietinum	EST
GR393388	GR393388	Cicer arietinum	EST

Homology

[Close]

BLAST of Cicer_arietinum_v1_Contig1735 vs. TrEMBL
Match: C6T071_SOYBN (Putative uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 5.897e-24
Identity = 58/85 (68.24%), Postives = 67/85 (78.82%), Query Frame = -3

Query:  215 MCPLRLILVFLSATLAGFIVLRNFRSQPKIDDEDDADTTLPLDPKISD----FSNENSKVRVALEFGFWTFVDMASGRYLWRHVV 457
            MCPLRLIL+FLSATLAGF VLRN RSQP+I+++   D  +P +PKISD     SN  SKVR  +E GFWTFVDMASGRYLWRH+V
Sbjct:    1 MCPLRLILIFLSATLAGFFVLRNLRSQPQIEED---DAVVPPNPKISDSSDASSNGTSKVRAVVESGFWTFVDMASGRYLWRHLV 82

[Close]

BLAST of Cicer_arietinum_v1_Contig1735 vs. TrEMBL
Match: C6SXN3_SOYBN (Putative uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 6.520e-23
Identity = 56/85 (65.88%), Postives = 65/85 (76.47%), Query Frame = -3

Query:  215 MCPLRLILVFLSATLAGFIVLRNFRSQPKIDDEDDADTTLPLDPKISD----FSNENSKVRVALEFGFWTFVDMASGRYLWRHVV 457
            MCPLR IL+FLSATLAGF VLRN RSQP+I   ++ D  +P +PKISD     SN  SK+R  +E GFWTFVDMASGRYLWRH+V
Sbjct:    1 MCPLRFILIFLSATLAGFFVLRNLRSQPQI---EEGDAVVPPNPKISDSSDASSNVTSKLRAVVESGFWTFVDMASGRYLWRHLV 82

[Close]

BLAST of Cicer_arietinum_v1_Contig1735 vs. TrEMBL
Match: D7SJL0_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_4.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00024585001 PE=4 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.248e-18
Identity = 49/82 (59.76%), Postives = 60/82 (73.17%), Query Frame = -3

Query:  215 KMCPLRLILVFLSATLAGFIVLRNFRSQPKIDDEDDADTTLPLDPKISDFSNENSKVRVALEFGFWTFVDMASGRYLWRHVV 460
            +MCPLRLIL+FLSATLAGF VLRN +SQP++  +  AD     D    D + ++SKV  A+  GFWT VDMASGRYLWRH+V
Sbjct:   32 EMCPLRLILIFLSATLAGFFVLRNLKSQPQVVADAPADGDRD-DNDPHDSTPKSSKVLSAIGSGFWTCVDMASGRYLWRHLV 112

[Close]

BLAST of Cicer_arietinum_v1_Contig1735 vs. TrEMBL
Match: B9INN7_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_574499 PE=4 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.191e-16
Identity = 48/90 (53.33%), Postives = 59/90 (65.56%), Query Frame = -3

Query:  218 MCPLRLILVFLSATLAGFIVLRNFRSQP---KIDDEDDADTTLPLD-------PKISDFSNENSKVRVALEFGFWTFVDMASGRYLWRHV 457
            MCPLRLILVFLSATLAGF V++N +S+P     D  DD ++T   D       P  S  S+  SKV+  +E GFWT VDMASG+YLWR +
Sbjct:    1 MCPLRLILVFLSATLAGFFVIKNLKSRPFSASTDTGDDDNSTTTTDSNKNSPHPSDSSSSSRFSKVKSGVEMGFWTLVDMASGKYLWRQL 90

[Close]

BLAST of Cicer_arietinum_v1_Contig1735 vs. TrEMBL
Match: B9RVE3_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1134450 PE=4 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.317e-15
Identity = 47/85 (55.29%), Postives = 58/85 (68.24%), Query Frame = -3

Query:  218 MCPLRLILVFLSATLAGFIVLRNFRSQPKIDDEDDADTTLPLDPKISDFSNENSK-----VRVALEFGFWTFVDMASGRYLWRHV 457
            MCPLRLIL+FLSAT+AGF ++RN +S P  +D DD           SD S ++SK     VR A++ GFWT VDMASGRYLWRH+
Sbjct:    1 MCPLRLILIFLSATVAGFFLVRNLKSSP--NDSDDPQ---------SDSSTDDSKVLFSIVRSAIKSGFWTTVDMASGRYLWRHL 74

[Close]

BLAST of Cicer_arietinum_v1_Contig1735 vs. TrEMBL
Match: Q2RBF4_ORYSJ (Expressed protein OS=Oryza sativa subsp. japonica GN=Os11g0113300 PE=4 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 2.483e-14
Identity = 41/81 (50.62%), Postives = 55/81 (67.90%), Query Frame = -3

Query:  215 MCPLRLILVFLSATLAGFIVLRNFRSQPKIDDEDDADTTLPLDPKISDFSNENSKVRVALEFGFWTFVDMASGRYLWRHVV 457
            MCPLR+IL+FLSAT+AGF ++R   + P + D+ DA  +    P +      +SKV  AL+ GFWT VDMASG+YLWR +V
Sbjct:    1 MCPLRVILIFLSATIAGFFLIRGLNADPDLHDDADASESPRERPPVP----LHSKVGSALKTGFWTMVDMASGKYLWRTLV 77

[Close]

BLAST of Cicer_arietinum_v1_Contig1735 vs. TrEMBL
Match: A2ZAR5_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_34848 PE=4 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.483e-14
Identity = 41/81 (50.62%), Postives = 55/81 (67.90%), Query Frame = -3

Query:  215 MCPLRLILVFLSATLAGFIVLRNFRSQPKIDDEDDADTTLPLDPKISDFSNENSKVRVALEFGFWTFVDMASGRYLWRHVV 457
            MCPLR+IL+FLSAT+AGF ++R   + P + D+ DA  +    P +      +SKV  AL+ GFWT VDMASG+YLWR +V
Sbjct:    1 MCPLRVILIFLSATIAGFFLIRGLNADPDLHDDADASESPRERPPVP----LHSKVGSALKTGFWTMVDMASGKYLWRTLV 77

[Close]

BLAST of Cicer_arietinum_v1_Contig1735 vs. TrEMBL
Match: B9I6W6_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_571890 PE=4 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.244e-14
Identity = 41/80 (51.25%), Postives = 51/80 (63.75%), Query Frame = -3

Query:  218 MCPLRLILVFLSATLAGFIVLRNFRSQPKIDDEDDADTTLPLDPKISDFSNENSKVRVALEFGFWTFVDMASGRYLWRHV 457
            MCPLRLIL+FLSATLAGF V+RN +S P +      D  +           EN +V+  +E GFWT VDMASG+YLWR +
Sbjct:    1 MCPLRLILIFLSATLAGFFVIRNLKSPPFLHHHRHFDLFI-----------ENVQVKSGIEMGFWTLVDMASGKYLWRQL 69

[Close]

BLAST of Cicer_arietinum_v1_Contig1735 vs. TrEMBL
Match: Q2QYM8_ORYSJ (Expressed protein OS=Oryza sativa subsp. japonica GN=Os12g0112800 PE=4 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.533e-14
Identity = 42/81 (51.85%), Postives = 54/81 (66.67%), Query Frame = -3

Query:  215 MCPLRLILVFLSATLAGFIVLRNFRSQPKIDDEDDADTTLPLDPKISDFSNENSKVRVALEFGFWTFVDMASGRYLWRHVV 457
            MCPLR+IL+FLSAT+AGF ++R   + P +   DDAD      P+       +SKV  AL+ GFWT VDMASG+YLWR +V
Sbjct:    1 MCPLRVILIFLSATIAGFFLIRGLNADPDLL-HDDADADASESPRERAPVPLHSKVGSALKTGFWTMVDMASGKYLWRTLV 80

[Close]

BLAST of Cicer_arietinum_v1_Contig1735 vs. TrEMBL
Match: C5YRM4_SORBI (Putative uncharacterized protein Sb08g002750 OS=Sorghum bicolor GN=Sb08g002750 PE=4 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.233e-13
Identity = 41/81 (50.62%), Postives = 54/81 (66.67%), Query Frame = -3

Query:  215 MCPLRLILVFLSATLAGFIVLRNFRSQPKIDDEDDADTTLPLDPKISDFSNENSKVRVALEFGFWTFVDMASGRYLWRHVV 457
            MCPLR+IL+FLSAT+AGF ++R   ++P   D D  ++  P  P        +SKV  A++ GFWT VDMASGRYLWR +V
Sbjct:    1 MCPLRVILIFLSATIAGFFLIRGLNAEPDQFDADADESETPRAP-----LPLHSKVGSAVKTGFWTMVDMASGRYLWRTLV 76

[Close]

BLAST of Cicer_arietinum_v1_Contig1735 vs. TAIR peptide
Match: AT5G58375.1 (| Symbols: | Methyltransferase-related protein | chr5:23596369-23596705 FORWARD LENGTH=85)

HSP 1 Score: 77.0258 bits (188), Expect = 6.688e-15
Identity = 45/82 (54.88%), Postives = 54/82 (65.85%), Query Frame = -3

Query:  218 MCPLRLILVFLSATLAGFIVLR--NFRSQPKIDDEDDADTTLPLDPKISDFSNENSKVRVALEFGFWTFVDMASGRYLWRHV 457
            MCPLRLIL+FLSATLAGF VL+  N  S   +DD    D     D  +S F    SKV +A++ GFWT VDMASGRYLW ++
Sbjct:    1 MCPLRLILIFLSATLAGFFVLQKLNSTSDDPLDD-SFTDAEHADDDSVSGF----SKVGMAMKSGFWTCVDMASGRYLWNNL 77

[Close]

BLAST of Cicer_arietinum_v1_Contig1735 vs. TAIR peptide
Match: AT5G18150.1 (| Symbols: | Methyltransferase-related protein | chr5:6000014-6000331 REVERSE LENGTH=76)

HSP 1 Score: 68.1662 bits (165), Expect = 3.107e-12
Identity = 33/80 (41.25%), Postives = 46/80 (57.50%), Query Frame = -3

Query:  218 MCPLRLILVFLSATLAGFIVLRNFRSQPKIDDEDDADTTLPLDPKISDFSNENSKVRVALEFGFWTFVDMASGRYLWRHV 457
            MCP+R +LVF SA LAG+   +   S P+ D  D+ +    L+            ++  +E GFW FVDMASGRYLWR++
Sbjct:    1 MCPMRFLLVFFSAVLAGYFAWKTVSSSPEFDSPDELNEKQELN------------LKKKMENGFWVFVDMASGRYLWRNL 68

[Close]

BLAST of Cicer_arietinum_v1_Contig1735 vs. TAIR peptide
Match: AT5G14602.1 (| Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: Methyltransferase-related protein (TAIR:AT5G18150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:4709436-4709678 FORWARD LENGTH=80)

HSP 1 Score: 65.855 bits (159), Expect = 1.542e-11
Identity = 35/80 (43.75%), Postives = 47/80 (58.75%), Query Frame = -3

Query:  218 MCPLRLILVFLSATLAGFIVLRNFRSQPKIDDEDDADTTLPLDPKISDFSNENSKVRVALEFGFWTFVDMASGRYLWRHV 457
            MCPLR +LVF SA LAG+I  R   S P++     +D  L  + K      +    +  ++ G WTFVDMASGRYLWR++
Sbjct:    1 MCPLRFVLVFFSAVLAGYIAWRTVNSTPEL----FSDELLQAEAK----EKQGLDFKRKMDNGLWTFVDMASGRYLWRNL 72

The following BLAST results are available for this feature:

BLAST of Cicer_arietinum_v1_Contig1735 vs. TrEMBL
BLAST of Cicer_arietinum_v1_Contig1735 vs. TAIR peptide

BLAST of Cicer_arietinum_v1_Contig1735 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
C6T071_SOYBN	5.897e-24	68.24	Putative uncharacterized protein OS=Glycine max PE...	[more]
C6SXN3_SOYBN	6.520e-23	65.88	Putative uncharacterized protein OS=Glycine max PE...	[more]
D7SJL0_VITVI	8.248e-18	59.76	Whole genome shotgun sequence of line PN40024, sca...	[more]
B9INN7_POPTR	1.191e-16	53.33	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
B9RVE3_RICCO	1.317e-15	55.29	Putative uncharacterized protein OS=Ricinus commun...	[more]
Q2RBF4_ORYSJ	2.483e-14	50.62	Expressed protein OS=Oryza sativa subsp. japonica ...	[more]
A2ZAR5_ORYSI	2.483e-14	50.62	Putative uncharacterized protein OS=Oryza sativa s...	[more]
B9I6W6_POPTR	3.244e-14	51.25	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
Q2QYM8_ORYSJ	5.533e-14	51.85	Expressed protein OS=Oryza sativa subsp. japonica ...	[more]
C5YRM4_SORBI	1.233e-13	50.62	Putative uncharacterized protein Sb08g002750 OS=So...	[more]

BLAST of Cicer_arietinum_v1_Contig1735 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 3


Match Name	E-value	Identity	Description
AT5G58375.1	6.688e-15	54.88	\| Symbols: \| Methyltransferase-related protein \| ...	[more]
AT5G18150.1	3.107e-12	41.25	\| Symbols: \| Methyltransferase-related protein \| ...	[more]
AT5G14602.1	1.542e-11	43.75	\| Symbols: \| FUNCTIONS IN: molecular_function unk...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 4..26 score

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>Cicer_arietinum_v1_Contig1735 ID=Cicer_arietinum_v1_Contig1735; Name=Cicer_arietinum_v1_Contig1735; organism=Cicer arietinum; type=contig; length=534bp
GGGGTATTCATTATCATTATCATCATTATCATCATCATTATTTGTATTGC
AAATTCAAAACCAACAACAATACTATGAACATCAAATATGATACAGATTA
CAAAGCGTGCAAGTTGACCCAAAAATCACAATATCAAAGTCAATGATATT
GATCAATCACCCAAATCCAACCACAAAAAAAACATCATCAGCTAAAGCGC
TTTGAAAATGATGAAACCACATGCCTCCAAAGATAACGCCCACTAGCCAT
ATCCACAAAGGTCCAAAACCCAAATTCTAACGCAACCCTAACCTTGGAAT
TTTCATTTGAAAAATCTGAAATTTTAGGGTCCAAAGGAAGGGTAGTATCA
GCGTCGTCCTCATCGTCGATCTTAGGCTGAGATCTGAAATTTCTGAGGAC
GATGAAACCGGCGAGAGTTGCGGACAAGAATACGAGAATGAGCCTTAGAG
GACACATCTTTTTTTCCTCAATCAATCCCTTCTATGAAGAATGTGATTGA
GAAATGTGTAAGAATGTGGTGGCTCAGTTAGAAC

Search form

Cicer_arietinum_v1_Contig1735