Cicer_arietinum_v1_Contig1838
Contig Overview
Alignments
The following features are aligned
Unigenes
This contig is part of the following unigenes:
Analyses
This contig is derived from or has results from the following analyses
Relationships
The following EST feature(s) are a part of this contig:
Homology
BLAST of Cicer_arietinum_v1_Contig1838 vs. TrEMBL
Match: B9N1V7_POPTR (Amino acid transporter OS=Populus trichocarpa GN=POPTRDRAFT_580719 PE=4 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.357e-11 Identity = 40/68 (58.82%), Postives = 46/68 (67.65%), Query Frame = -3 Query: 333 FMFLLITKLTCLP---PSFQPCRDRYNIATKSDKVLCVIMIVLAVFSNIVAIYSDAHALIKVNKTSRE 527 F F T CL P+ RDR+NIATK DK+LC+ MIVLAVFSN VAIYSDA+ALIK N + E Sbjct: 393 FQFTGATAAVCLGFIFPASITLRDRHNIATKRDKILCIFMIVLAVFSNAVAIYSDAYALIKRNPSHSE 460
BLAST of Cicer_arietinum_v1_Contig1838 vs. TrEMBL
Match: B9N7P5_POPTR (Amino acid transporter OS=Populus trichocarpa GN=POPTRDRAFT_584645 PE=4 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 6.858e-11 Identity = 39/68 (57.35%), Postives = 46/68 (67.65%), Query Frame = -3 Query: 333 FMFLLITKLTCLP---PSFQPCRDRYNIATKSDKVLCVIMIVLAVFSNIVAIYSDAHALIKVNKTSRE 527 F F T CL P+ RDR+NIA+K DK+LC+ MI LAVFSN VAIYSDA+ALIK N + RE Sbjct: 393 FQFTGATAAVCLGFIFPASITLRDRHNIASKRDKILCIFMIALAVFSNGVAIYSDAYALIKKNPSPRE 460
BLAST of Cicer_arietinum_v1_Contig1838 vs. TrEMBL
Match: B9T738_RICCO (Amino acid transporter, putative OS=Ricinus communis GN=RCOM_0012320 PE=4 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.404e-10 Identity = 38/68 (55.88%), Postives = 45/68 (66.18%), Query Frame = -3 Query: 333 FMFLLITKLTCLP---PSFQPCRDRYNIATKSDKVLCVIMIVLAVFSNIVAIYSDAHALIKVNKTSRE 527 F F T CL P+ RDR+NIATK DK+L + MI LAVFSN VAIYSDA+ALIK N + R+ Sbjct: 394 FQFTGATAAVCLGFIFPASITLRDRHNIATKKDKILSIFMISLAVFSNAVAIYSDAYALIKKNSSPRQ 461
BLAST of Cicer_arietinum_v1_Contig1838 vs. TrEMBL
Match: D7SMK8_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_83.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00036513001 PE=4 SV=1) HSP 1 Score: 65.855 bits (159), Expect = 2.206e-9 Identity = 36/68 (52.94%), Postives = 44/68 (64.71%), Query Frame = -3 Query: 333 FMFLLITKLTCLP---PSFQPCRDRYNIATKSDKVLCVIMIVLAVFSNIVAIYSDAHALIKVNKTSRE 527 F F T C+ P+ RDR++IATK DK+L MI LAVFSN+VAIYSDA+AL K N + RE Sbjct: 275 FQFTGATAAVCIGFIFPAAITLRDRHSIATKKDKILASFMIALAVFSNLVAIYSDAYALFKKNSSRRE 342
BLAST of Cicer_arietinum_v1_Contig1838 vs. TrEMBL
Match: A5AQT3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_036511 PE=4 SV=1) HSP 1 Score: 65.855 bits (159), Expect = 2.206e-9 Identity = 36/68 (52.94%), Postives = 44/68 (64.71%), Query Frame = -3 Query: 333 FMFLLITKLTCLP---PSFQPCRDRYNIATKSDKVLCVIMIVLAVFSNIVAIYSDAHALIKVNKTSRE 527 F F T C+ P+ RDR++IATK DK+L MI LAVFSN+VAIYSDA+AL K N + RE Sbjct: 370 FQFTGATAAVCIGFIFPAAITLRDRHSIATKKDKILASFMIALAVFSNLVAIYSDAYALFKKNSSRRE 437
BLAST of Cicer_arietinum_v1_Contig1838 vs. TrEMBL
Match: D4P872_LINUS (Putative amino acid transporter (Fragment) OS=Linum usitatissimum PE=2 SV=1) HSP 1 Score: 65.4698 bits (158), Expect = 2.881e-9 Identity = 37/65 (56.92%), Postives = 43/65 (66.15%), Query Frame = -3 Query: 342 FMFLLITKLTCLP---PSFQPCRDRYNIATKSDKVLCVIMIVLAVFSNIVAIYSDAHALIKVNKT 527 F F T CL P+ RDR+ IAT DK+LCV MIVLAVF+N VAIYSDA+ALIK N + Sbjct: 31 FQFTGATAAVCLGFIFPAAITLRDRHYIATSKDKMLCVFMIVLAVFANAVAIYSDAYALIKRNSS 95
BLAST of Cicer_arietinum_v1_Contig1838 vs. TrEMBL
Match: D7MJU4_ARALY (Amino acid transporter family protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_356106 PE=4 SV=1) HSP 1 Score: 58.9214 bits (141), Expect = 2.697e-7 Identity = 32/63 (50.79%), Postives = 40/63 (63.49%), Query Frame = -3 Query: 348 FMFLLITKLTCLP---PSFQPCRDRYNIATKSDKVLCVIMIVLAVFSNIVAIYSDAHALIKVN 527 F F T C+ P+ +DR+N ATK DK + + MIVLAVFSN +AIYSDA+AL K N Sbjct: 388 FQFTGATAAVCIGFIFPAAVILKDRHNQATKRDKTIAICMIVLAVFSNAIAIYSDAYALFKKN 450
BLAST of Cicer_arietinum_v1_Contig1838 vs. TrEMBL
Match: Q9FMC0_ARATH (Amino acid transporter-like protein OS=Arabidopsis thaliana GN=At5g38820 PE=4 SV=1) HSP 1 Score: 57.3806 bits (137), Expect = 7.847e-7 Identity = 31/61 (50.82%), Postives = 39/61 (63.93%), Query Frame = -3 Query: 354 FMFLLITKLTCLP---PSFQPCRDRYNIATKSDKVLCVIMIVLAVFSNIVAIYSDAHALIK 527 F F T C+ P+ +DR+N ATK DK + + MIVLAVFSN +AIYSDA+AL K Sbjct: 393 FQFTGATAAVCIGFIFPAAVILKDRHNQATKRDKTIAICMIVLAVFSNAIAIYSDAYALFK 453
BLAST of Cicer_arietinum_v1_Contig1838 vs. TAIR peptide
Match: AT5G38820.1 (| Symbols: | Transmembrane amino acid transporter family protein | chr5:15543481-15545182 FORWARD LENGTH=456) HSP 1 Score: 57.3806 bits (137), Expect = 6.211e-9 Identity = 31/61 (50.82%), Postives = 39/61 (63.93%), Query Frame = -3 Query: 354 FMFLLITKLTCLP---PSFQPCRDRYNIATKSDKVLCVIMIVLAVFSNIVAIYSDAHALIK 527 F F T C+ P+ +DR+N ATK DK + + MIVLAVFSN +AIYSDA+AL K Sbjct: 388 FQFTGATAAVCIGFIFPAAVILKDRHNQATKRDKTIAICMIVLAVFSNAIAIYSDAYALFK 448
BLAST of Cicer_arietinum_v1_Contig1838 vs. TAIR peptide
Match: AT3G30390.2 (| Symbols: | Transmembrane amino acid transporter family protein | chr3:11977112-11978827 REVERSE LENGTH=460) HSP 1 Score: 51.9878 bits (123), Expect = 2.609e-7 Identity = 30/63 (47.62%), Postives = 37/63 (58.73%), Query Frame = -3 Query: 348 FMFLLITKLTCLP---PSFQPCRDRYNIATKSDKVLCVIMIVLAVFSNIVAIYSDAHALIKVN 527 F F T CL P+ +DR++ AT D L + MIVLAV SN +AIYSDA+AL K N Sbjct: 394 FQFTGATAAVCLGFIFPASIILKDRHDKATNRDTTLAIFMIVLAVLSNAIAIYSDAYALFKKN 456
BLAST of Cicer_arietinum_v1_Contig1838 vs. TAIR peptide
Match: AT3G30390.1 (| Symbols: | Transmembrane amino acid transporter family protein | chr3:11977112-11978827 REVERSE LENGTH=460) HSP 1 Score: 51.9878 bits (123), Expect = 2.609e-7 Identity = 30/63 (47.62%), Postives = 37/63 (58.73%), Query Frame = -3 Query: 348 FMFLLITKLTCLP---PSFQPCRDRYNIATKSDKVLCVIMIVLAVFSNIVAIYSDAHALIKVN 527 F F T CL P+ +DR++ AT D L + MIVLAV SN +AIYSDA+AL K N Sbjct: 394 FQFTGATAAVCLGFIFPASIILKDRHDKATNRDTTLAIFMIVLAVLSNAIAIYSDAYALFKKN 456 The following BLAST results are available for this feature:
BLAST of Cicer_arietinum_v1_Contig1838 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl) Total hits: 8
BLAST of Cicer_arietinum_v1_Contig1838 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide) Total hits: 3
InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
Sequences
The
following sequences are available for this feature:
contig sequence >Cicer_arietinum_v1_Contig1838 ID=Cicer_arietinum_v1_Contig1838; Name=Cicer_arietinum_v1_Contig1838; organism=Cicer arietinum; type=contig; length=568bpback to top |