Cicer_arietinum_v1_Contig1838

Contig Overview
NameCicer_arietinum_v1_Contig1838
Unique NameCicer_arietinum_v1_Contig1838
Typecontig
OrganismCicer arietinum (chickpea)
Sequence length568
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
GR393021ESTGR393021:1..331 +Cicer arietinum unigene v1n/a
GR406149ESTGR406149:1..508 -Cicer arietinum unigene v1n/a
GR916020ESTGR916020:177..567 +Cicer arietinum unigene v1n/a
GR914134ESTGR914134:177..568 +Cicer arietinum unigene v1n/a
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Cicer arietinum unigene v1Cicer arietinum unigene v1contig
Analyses
This contig is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum unigene v12010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Trembl2010-12-28
InterProScan analysis for Cicer arietinum unigene v12010-12-29
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
GR393021GR393021Cicer arietinumEST
GR406149GR406149Cicer arietinumEST
GR916020GR916020Cicer arietinumEST
GR914134GR914134Cicer arietinumEST


Homology
BLAST of Cicer_arietinum_v1_Contig1838 vs. TrEMBL
Match: B9N1V7_POPTR (Amino acid transporter OS=Populus trichocarpa GN=POPTRDRAFT_580719 PE=4 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.357e-11
Identity = 40/68 (58.82%), Postives = 46/68 (67.65%), Query Frame = -3
Query:  333 FMFLLITKLTCLP---PSFQPCRDRYNIATKSDKVLCVIMIVLAVFSNIVAIYSDAHALIKVNKTSRE 527
            F F   T   CL    P+    RDR+NIATK DK+LC+ MIVLAVFSN VAIYSDA+ALIK N +  E
Sbjct:  393 FQFTGATAAVCLGFIFPASITLRDRHNIATKRDKILCIFMIVLAVFSNAVAIYSDAYALIKRNPSHSE 460          
BLAST of Cicer_arietinum_v1_Contig1838 vs. TrEMBL
Match: B9N7P5_POPTR (Amino acid transporter OS=Populus trichocarpa GN=POPTRDRAFT_584645 PE=4 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.858e-11
Identity = 39/68 (57.35%), Postives = 46/68 (67.65%), Query Frame = -3
Query:  333 FMFLLITKLTCLP---PSFQPCRDRYNIATKSDKVLCVIMIVLAVFSNIVAIYSDAHALIKVNKTSRE 527
            F F   T   CL    P+    RDR+NIA+K DK+LC+ MI LAVFSN VAIYSDA+ALIK N + RE
Sbjct:  393 FQFTGATAAVCLGFIFPASITLRDRHNIASKRDKILCIFMIALAVFSNGVAIYSDAYALIKKNPSPRE 460          
BLAST of Cicer_arietinum_v1_Contig1838 vs. TrEMBL
Match: B9T738_RICCO (Amino acid transporter, putative OS=Ricinus communis GN=RCOM_0012320 PE=4 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.404e-10
Identity = 38/68 (55.88%), Postives = 45/68 (66.18%), Query Frame = -3
Query:  333 FMFLLITKLTCLP---PSFQPCRDRYNIATKSDKVLCVIMIVLAVFSNIVAIYSDAHALIKVNKTSRE 527
            F F   T   CL    P+    RDR+NIATK DK+L + MI LAVFSN VAIYSDA+ALIK N + R+
Sbjct:  394 FQFTGATAAVCLGFIFPASITLRDRHNIATKKDKILSIFMISLAVFSNAVAIYSDAYALIKKNSSPRQ 461          
BLAST of Cicer_arietinum_v1_Contig1838 vs. TrEMBL
Match: D7SMK8_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_83.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00036513001 PE=4 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 2.206e-9
Identity = 36/68 (52.94%), Postives = 44/68 (64.71%), Query Frame = -3
Query:  333 FMFLLITKLTCLP---PSFQPCRDRYNIATKSDKVLCVIMIVLAVFSNIVAIYSDAHALIKVNKTSRE 527
            F F   T   C+    P+    RDR++IATK DK+L   MI LAVFSN+VAIYSDA+AL K N + RE
Sbjct:  275 FQFTGATAAVCIGFIFPAAITLRDRHSIATKKDKILASFMIALAVFSNLVAIYSDAYALFKKNSSRRE 342          
BLAST of Cicer_arietinum_v1_Contig1838 vs. TrEMBL
Match: A5AQT3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_036511 PE=4 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 2.206e-9
Identity = 36/68 (52.94%), Postives = 44/68 (64.71%), Query Frame = -3
Query:  333 FMFLLITKLTCLP---PSFQPCRDRYNIATKSDKVLCVIMIVLAVFSNIVAIYSDAHALIKVNKTSRE 527
            F F   T   C+    P+    RDR++IATK DK+L   MI LAVFSN+VAIYSDA+AL K N + RE
Sbjct:  370 FQFTGATAAVCIGFIFPAAITLRDRHSIATKKDKILASFMIALAVFSNLVAIYSDAYALFKKNSSRRE 437          
BLAST of Cicer_arietinum_v1_Contig1838 vs. TrEMBL
Match: D4P872_LINUS (Putative amino acid transporter (Fragment) OS=Linum usitatissimum PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 2.881e-9
Identity = 37/65 (56.92%), Postives = 43/65 (66.15%), Query Frame = -3
Query:  342 FMFLLITKLTCLP---PSFQPCRDRYNIATKSDKVLCVIMIVLAVFSNIVAIYSDAHALIKVNKT 527
            F F   T   CL    P+    RDR+ IAT  DK+LCV MIVLAVF+N VAIYSDA+ALIK N +
Sbjct:   31 FQFTGATAAVCLGFIFPAAITLRDRHYIATSKDKMLCVFMIVLAVFANAVAIYSDAYALIKRNSS 95          
BLAST of Cicer_arietinum_v1_Contig1838 vs. TrEMBL
Match: D7MJU4_ARALY (Amino acid transporter family protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_356106 PE=4 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 2.697e-7
Identity = 32/63 (50.79%), Postives = 40/63 (63.49%), Query Frame = -3
Query:  348 FMFLLITKLTCLP---PSFQPCRDRYNIATKSDKVLCVIMIVLAVFSNIVAIYSDAHALIKVN 527
            F F   T   C+    P+    +DR+N ATK DK + + MIVLAVFSN +AIYSDA+AL K N
Sbjct:  388 FQFTGATAAVCIGFIFPAAVILKDRHNQATKRDKTIAICMIVLAVFSNAIAIYSDAYALFKKN 450          
BLAST of Cicer_arietinum_v1_Contig1838 vs. TrEMBL
Match: Q9FMC0_ARATH (Amino acid transporter-like protein OS=Arabidopsis thaliana GN=At5g38820 PE=4 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 7.847e-7
Identity = 31/61 (50.82%), Postives = 39/61 (63.93%), Query Frame = -3
Query:  354 FMFLLITKLTCLP---PSFQPCRDRYNIATKSDKVLCVIMIVLAVFSNIVAIYSDAHALIK 527
            F F   T   C+    P+    +DR+N ATK DK + + MIVLAVFSN +AIYSDA+AL K
Sbjct:  393 FQFTGATAAVCIGFIFPAAVILKDRHNQATKRDKTIAICMIVLAVFSNAIAIYSDAYALFK 453          
BLAST of Cicer_arietinum_v1_Contig1838 vs. TAIR peptide
Match: AT5G38820.1 (| Symbols: | Transmembrane amino acid transporter family protein | chr5:15543481-15545182 FORWARD LENGTH=456)

HSP 1 Score: 57.3806 bits (137), Expect = 6.211e-9
Identity = 31/61 (50.82%), Postives = 39/61 (63.93%), Query Frame = -3
Query:  354 FMFLLITKLTCLP---PSFQPCRDRYNIATKSDKVLCVIMIVLAVFSNIVAIYSDAHALIK 527
            F F   T   C+    P+    +DR+N ATK DK + + MIVLAVFSN +AIYSDA+AL K
Sbjct:  388 FQFTGATAAVCIGFIFPAAVILKDRHNQATKRDKTIAICMIVLAVFSNAIAIYSDAYALFK 448          
BLAST of Cicer_arietinum_v1_Contig1838 vs. TAIR peptide
Match: AT3G30390.2 (| Symbols: | Transmembrane amino acid transporter family protein | chr3:11977112-11978827 REVERSE LENGTH=460)

HSP 1 Score: 51.9878 bits (123), Expect = 2.609e-7
Identity = 30/63 (47.62%), Postives = 37/63 (58.73%), Query Frame = -3
Query:  348 FMFLLITKLTCLP---PSFQPCRDRYNIATKSDKVLCVIMIVLAVFSNIVAIYSDAHALIKVN 527
            F F   T   CL    P+    +DR++ AT  D  L + MIVLAV SN +AIYSDA+AL K N
Sbjct:  394 FQFTGATAAVCLGFIFPASIILKDRHDKATNRDTTLAIFMIVLAVLSNAIAIYSDAYALFKKN 456          
BLAST of Cicer_arietinum_v1_Contig1838 vs. TAIR peptide
Match: AT3G30390.1 (| Symbols: | Transmembrane amino acid transporter family protein | chr3:11977112-11978827 REVERSE LENGTH=460)

HSP 1 Score: 51.9878 bits (123), Expect = 2.609e-7
Identity = 30/63 (47.62%), Postives = 37/63 (58.73%), Query Frame = -3
Query:  348 FMFLLITKLTCLP---PSFQPCRDRYNIATKSDKVLCVIMIVLAVFSNIVAIYSDAHALIKVN 527
            F F   T   CL    P+    +DR++ AT  D  L + MIVLAV SN +AIYSDA+AL K N
Sbjct:  394 FQFTGATAAVCLGFIFPASIILKDRHDKATNRDTTLAIFMIVLAVLSNAIAIYSDAYALFKKN 456          
The following BLAST results are available for this feature:
BLAST of Cicer_arietinum_v1_Contig1838 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 8
Match NameE-valueIdentityDescription
B9N1V7_POPTR2.357e-1158.82Amino acid transporter OS=Populus trichocarpa GN=P... [more]
B9N7P5_POPTR6.858e-1157.35Amino acid transporter OS=Populus trichocarpa GN=P... [more]
B9T738_RICCO3.404e-1055.88Amino acid transporter, putative OS=Ricinus commun... [more]
D7SMK8_VITVI2.206e-952.94Whole genome shotgun sequence of line PN40024, sca... [more]
A5AQT3_VITVI2.206e-952.94Putative uncharacterized protein OS=Vitis vinifera... [more]
D4P872_LINUS2.881e-956.92Putative amino acid transporter (Fragment) OS=Linu... [more]
D7MJU4_ARALY2.697e-750.79Amino acid transporter family protein OS=Arabidops... [more]
Q9FMC0_ARATH7.847e-750.82Amino acid transporter-like protein OS=Arabidopsis... [more]
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BLAST of Cicer_arietinum_v1_Contig1838 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 3
Match NameE-valueIdentityDescription
AT5G38820.16.211e-950.82| Symbols: | Transmembrane amino acid transporter... [more]
AT3G30390.22.609e-747.62| Symbols: | Transmembrane amino acid transporter... [more]
AT3G30390.12.609e-747.62| Symbols: | Transmembrane amino acid transporter... [more]
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InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 39..50
score

Sequences
The following sequences are available for this feature:

contig sequence

>Cicer_arietinum_v1_Contig1838 ID=Cicer_arietinum_v1_Contig1838; Name=Cicer_arietinum_v1_Contig1838; organism=Cicer arietinum; type=contig; length=568bp
GGAAAATAAAATACATTATTTCATGGCAATTTTCTCTTGTCCAATTCAAG
AACTTTACCATCCTTACATAGTCCATTCCTTCATTCAATACAACAATACA
TACAAACTAGAACCATATAACAACTATAACAAAAATCGAAAAAATACAAA
CTAGGCCGAAAACACCTTGTAGGCCTCTGACACTTTCTGAAGCAATTTGT
ACACAGGGTAGGTAGCTTCCATGTTTATTCAAAAATCAACTCATGAGACC
CTTCTCAGAAAACCCTGATTTTCTGATTGACCAAATATAACCTGGTCAAT
TTGGTTCCTTTTGTAAAGAACCGAGACCGTCATTCGCGCGAAGTTTTGTT
CACCTTAATCAAGGCATGGGCGTCACTGTATATAGCCACAATGTTTGAGA
AGACTGCGAGGACTATCATGATGACACATAGAACTTTGTCTGATTTAGTA
GCGATGTTGTAGCGATCCCTACATGGTTGAAAAGATGGTGGAAGACATGT
TAATTTAGTTATCAGCAAAAACATAAACACAAAGGATTAGACAGCAAAAC
TACATCACTGGACCTGCC
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