Cicer_arietinum_v1_Contig1856

Contig Overview


Name	Cicer_arietinum_v1_Contig1856
Unique Name	Cicer_arietinum_v1_Contig1856
Type	contig
Organism	Cicer arietinum (chickpea)
Sequence length	702

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
GR408781	EST	GR408781:1..702 -	Cicer arietinum unigene v1	n/a
GR396153	EST	GR396153:469..694 +	Cicer arietinum unigene v1	n/a

Unigenes

This contig is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	contig

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide	2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Relationships

The following EST feature(s) are a part of this contig:


Feature Name	Unique Name	Species	Type
GR408781	GR408781	Cicer arietinum	EST
GR396153	GR396153	Cicer arietinum	EST

Homology

[Close]

BLAST of Cicer_arietinum_v1_Contig1856 vs. SwissProt
Match: NU2M_OENBE (NADH-ubiquinone oxidoreductase chain 2 OS=Oenothera bertiana GN=ND2 PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 7.041e-21
Identity = 50/53 (94.34%), Postives = 50/53 (94.34%), Query Frame = 1

Query:   82 CSMIYGSTGATHFDQLAKIFTGYEITGARSSGIFMGILSIAVGSLFKITAVPF 240
            CSMIYGSTGATHFDQLAKI TGYEITGARSSGIFMGIL IAVG LFKITAVPF
Sbjct:  183 CSMIYGSTGATHFDQLAKILTGYEITGARSSGIFMGILFIAVGFLFKITAVPF 235

[Close]

BLAST of Cicer_arietinum_v1_Contig1856 vs. SwissProt
Match: NU2M_ARATH (NADH-ubiquinone oxidoreductase chain 2 OS=Arabidopsis thaliana GN=ND2 PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 7.041e-21
Identity = 50/53 (94.34%), Postives = 50/53 (94.34%), Query Frame = 1

Query:   82 CSMIYGSTGATHFDQLAKIFTGYEITGARSSGIFMGILSIAVGSLFKITAVPF 240
            CSMIYGSTGATHFDQLAKI TGYEITGARSSGIFMGIL IAVG LFKITAVPF
Sbjct:  194 CSMIYGSTGATHFDQLAKILTGYEITGARSSGIFMGILFIAVGFLFKITAVPF 246

[Close]

BLAST of Cicer_arietinum_v1_Contig1856 vs. SwissProt
Match: NU2M_MARPO (NADH-ubiquinone oxidoreductase chain 2 OS=Marchantia polymorpha GN=ND2 PE=3 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 8.056e-17
Identity = 45/55 (81.82%), Postives = 49/55 (89.09%), Query Frame = 1

Query:   82 CSMIYGSTGATHFDQLAKIFTGYEIT--GARSSGIFMGILSIAVGSLFKITAVPF 240
            CSMIYG TG T+F++LAKIFTGYEIT  GA+SSGIFMGIL IAVG LFKITAVPF
Sbjct:  182 CSMIYGFTGVTNFEELAKIFTGYEITLFGAQSSGIFMGILFIAVGFLFKITAVPF 236

[Close]

BLAST of Cicer_arietinum_v1_Contig1856 vs. TrEMBL
Match: C5YVV6_SORBI (Putative uncharacterized protein Sb09g014016 (Fragment) OS=Sorghum bicolor GN=Sb09g014016 PE=4 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 6.758e-33
Identity = 71/74 (95.95%), Postives = 72/74 (97.30%), Query Frame = 1

Query:   31 GVRVYTCSVVVGPTHPICSMIYGSTGATHFDQLAKIFTGYEITGARSSGIFMGILSIAVGSLFKITAVPFQAAV 252
            GVRVYTCSVVVGPTHPICSMIYGSTGATHFDQLAKI TGYEITGARSSGIFMGIL IAVGSLF+ITAVPFQAAV
Sbjct:   26 GVRVYTCSVVVGPTHPICSMIYGSTGATHFDQLAKILTGYEITGARSSGIFMGILFIAVGSLFQITAVPFQAAV 99

HSP 2 Score: 21.9422 bits (45), Expect = 6.758e-33
Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 2

Query:    2 AVRVARTVTRG 34
            AVRVARTV RG
Sbjct:   16 AVRVARTVRRG 26

[Close]

BLAST of Cicer_arietinum_v1_Contig1856 vs. TrEMBL
Match: D7SZ18_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_505.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00007203001 PE=4 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 9.688e-26
Identity = 62/72 (86.11%), Postives = 64/72 (88.89%), Query Frame = 1

Query:   16 TYGNEGVRVYTCSVVVGPTHPICSMIYGSTGATHFDQLAKIFTGYEITGARSSGIFMGILSIAVGSLFKITA 231
            T+G  GVRVYT SV VGPTHPICSMIYGSTGATHFDQLAKI TGYEITGARSSG+FMGILSI VG L KITA
Sbjct:   26 TWGT-GVRVYTYSVRVGPTHPICSMIYGSTGATHFDQLAKILTGYEITGARSSGLFMGILSIPVGFLLKITA 96

[Close]

BLAST of Cicer_arietinum_v1_Contig1856 vs. TrEMBL
Match: Q05H69_HELAN (NADH dehydrogenase subunit 2 OS=Helianthus annuus GN=nad2 PE=4 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.225e-21
Identity = 52/54 (96.30%), Postives = 53/54 (98.15%), Query Frame = 1

Query:   79 ICSMIYGSTGATHFDQLAKIFTGYEITGARSSGIFMGILSIAVGSLFKITAVPF 240
            +CSMIYGSTGATHFDQLAKI TGYEITGARSSGIFMGILSIAVGSLFKITAVPF
Sbjct:    1 MCSMIYGSTGATHFDQLAKILTGYEITGARSSGIFMGILSIAVGSLFKITAVPF 54

[Close]

BLAST of Cicer_arietinum_v1_Contig1856 vs. TrEMBL
Match: O47413_PANGI (NADH-dehydrogenase subunit 2 (Fragment) OS=Panax ginseng GN=NAD2 PE=4 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.212e-21
Identity = 52/53 (98.11%), Postives = 52/53 (98.11%), Query Frame = 1

Query:   82 CSMIYGSTGATHFDQLAKIFTGYEITGARSSGIFMGILSIAVGSLFKITAVPF 240
            CSMIYGSTGATHFDQLAKI TGYEITGARSSGIFMGILSIAVGSLFKITAVPF
Sbjct:  183 CSMIYGSTGATHFDQLAKILTGYEITGARSSGIFMGILSIAVGSLFKITAVPF 235

[Close]

BLAST of Cicer_arietinum_v1_Contig1856 vs. TrEMBL
Match: Q6R9J9_MAIZE (NADH dehydrogenase subunit 2 OS=Zea mays GN=nad2 PE=4 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.090e-20
Identity = 51/53 (96.23%), Postives = 51/53 (96.23%), Query Frame = 1

Query:   82 CSMIYGSTGATHFDQLAKIFTGYEITGARSSGIFMGILSIAVGSLFKITAVPF 240
            CSMIYGSTGATHFDQLAKI TGYEITGARSSGIFMGIL IAVGSLFKITAVPF
Sbjct:  183 CSMIYGSTGATHFDQLAKILTGYEITGARSSGIFMGILFIAVGSLFKITAVPF 235

[Close]

BLAST of Cicer_arietinum_v1_Contig1856 vs. TrEMBL
Match: Q5MA39_TOBAC (NADH dehydrogenase subunit 2 OS=Nicotiana tabacum GN=nad2 PE=4 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.090e-20
Identity = 51/53 (96.23%), Postives = 51/53 (96.23%), Query Frame = 1

Query:   82 CSMIYGSTGATHFDQLAKIFTGYEITGARSSGIFMGILSIAVGSLFKITAVPF 240
            CSMIYGSTGATHFDQLAKI TGYEITGARSSGIFMGIL IAVGSLFKITAVPF
Sbjct:  183 CSMIYGSTGATHFDQLAKILTGYEITGARSSGIFMGILFIAVGSLFKITAVPF 235

[Close]

BLAST of Cicer_arietinum_v1_Contig1856 vs. TrEMBL
Match: Q2V2T2_ARATH (Putative uncharacterized protein AtMg00285.1 OS=Arabidopsis thaliana GN=AtMg00285 PE=4 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.090e-20
Identity = 51/53 (96.23%), Postives = 51/53 (96.23%), Query Frame = 1

Query:   82 CSMIYGSTGATHFDQLAKIFTGYEITGARSSGIFMGILSIAVGSLFKITAVPF 240
            CSMIYGSTGATHFDQLAKI TGYEITGARSSGIFMGILSIAVG LFKITAVPF
Sbjct:  194 CSMIYGSTGATHFDQLAKILTGYEITGARSSGIFMGILSIAVGFLFKITAVPF 246

[Close]

BLAST of Cicer_arietinum_v1_Contig1856 vs. TrEMBL
Match: Q1KKK5_MAIZE (NADH dehydrogenase subunit 2 OS=Zea mays subsp. mays GN=nad2 PE=4 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.090e-20
Identity = 51/53 (96.23%), Postives = 51/53 (96.23%), Query Frame = 1

Query:   82 CSMIYGSTGATHFDQLAKIFTGYEITGARSSGIFMGILSIAVGSLFKITAVPF 240
            CSMIYGSTGATHFDQLAKI TGYEITGARSSGIFMGIL IAVGSLFKITAVPF
Sbjct:  183 CSMIYGSTGATHFDQLAKILTGYEITGARSSGIFMGILFIAVGSLFKITAVPF 235

[Close]

BLAST of Cicer_arietinum_v1_Contig1856 vs. TrEMBL
Match: Q1KKB0_MAIZE (NADH dehydrogenase subunit 2 OS=Zea mays subsp. mays GN=nad2 PE=4 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.090e-20
Identity = 51/53 (96.23%), Postives = 51/53 (96.23%), Query Frame = 1

Query:   82 CSMIYGSTGATHFDQLAKIFTGYEITGARSSGIFMGILSIAVGSLFKITAVPF 240
            CSMIYGSTGATHFDQLAKI TGYEITGARSSGIFMGIL IAVGSLFKITAVPF
Sbjct:  183 CSMIYGSTGATHFDQLAKILTGYEITGARSSGIFMGILFIAVGSLFKITAVPF 235

[Close]

BLAST of Cicer_arietinum_v1_Contig1856 vs. TrEMBL
Match: Q0GRC1_ZEALU (NADH dehydrogenase subunit 2 OS=Zea luxurians GN=nad2 PE=4 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.090e-20
Identity = 51/53 (96.23%), Postives = 51/53 (96.23%), Query Frame = 1

Query:   82 CSMIYGSTGATHFDQLAKIFTGYEITGARSSGIFMGILSIAVGSLFKITAVPF 240
            CSMIYGSTGATHFDQLAKI TGYEITGARSSGIFMGIL IAVGSLFKITAVPF
Sbjct:  183 CSMIYGSTGATHFDQLAKILTGYEITGARSSGIFMGILFIAVGSLFKITAVPF 235

[Close]

BLAST of Cicer_arietinum_v1_Contig1856 vs. TAIR peptide
Match: ATMG01320.1 (| Symbols: NAD2B, NAD2.2, NAD2 | NADH dehydrogenase 2B | chrM:327890-333105 REVERSE LENGTH=499)

HSP 1 Score: 103.219 bits (256), Expect = 1.425e-22
Identity = 51/53 (96.23%), Postives = 51/53 (96.23%), Query Frame = 1

Query:   82 CSMIYGSTGATHFDQLAKIFTGYEITGARSSGIFMGILSIAVGSLFKITAVPF 240
            CSMIYGSTGATHFDQLAKI TGYEITGARSSGIFMGILSIAVG LFKITAVPF
Sbjct:  194 CSMIYGSTGATHFDQLAKILTGYEITGARSSGIFMGILSIAVGFLFKITAVPF 246

[Close]

BLAST of Cicer_arietinum_v1_Contig1856 vs. TAIR peptide
Match: ATMG00285.1 (| Symbols: NAD2A, NAD2.1, NAD2 | NADH dehydrogenase 2A | chrM:79740-81297 REVERSE LENGTH=499)

HSP 1 Score: 103.219 bits (256), Expect = 1.425e-22
Identity = 51/53 (96.23%), Postives = 51/53 (96.23%), Query Frame = 1

Query:   82 CSMIYGSTGATHFDQLAKIFTGYEITGARSSGIFMGILSIAVGSLFKITAVPF 240
            CSMIYGSTGATHFDQLAKI TGYEITGARSSGIFMGILSIAVG LFKITAVPF
Sbjct:  194 CSMIYGSTGATHFDQLAKILTGYEITGARSSGIFMGILSIAVGFLFKITAVPF 246

The following BLAST results are available for this feature:

BLAST of Cicer_arietinum_v1_Contig1856 vs. SwissProt
BLAST of Cicer_arietinum_v1_Contig1856 vs. TrEMBL
BLAST of Cicer_arietinum_v1_Contig1856 vs. TAIR peptide

BLAST of Cicer_arietinum_v1_Contig1856 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 3


Match Name	E-value	Identity	Description
NU2M_OENBE	7.041e-21	94.34	NADH-ubiquinone oxidoreductase chain 2 OS=Oenother...	[more]
NU2M_ARATH	7.041e-21	94.34	NADH-ubiquinone oxidoreductase chain 2 OS=Arabidop...	[more]
NU2M_MARPO	8.056e-17	81.82	NADH-ubiquinone oxidoreductase chain 2 OS=Marchant...	[more]

BLAST of Cicer_arietinum_v1_Contig1856 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
C5YVV6_SORBI	6.758e-33	95.95	Putative uncharacterized protein Sb09g014016 (Frag...	[more]
D7SZ18_VITVI	9.688e-26	86.11	Whole genome shotgun sequence of line PN40024, sca...	[more]
Q05H69_HELAN	3.225e-21	96.30	NADH dehydrogenase subunit 2 OS=Helianthus annuus ...	[more]
O47413_PANGI	4.212e-21	98.11	NADH-dehydrogenase subunit 2 (Fragment) OS=Panax g...	[more]
Q6R9J9_MAIZE	2.090e-20	96.23	NADH dehydrogenase subunit 2 OS=Zea mays GN=nad2 P...	[more]
Q5MA39_TOBAC	2.090e-20	96.23	NADH dehydrogenase subunit 2 OS=Nicotiana tabacum ...	[more]
Q2V2T2_ARATH	2.090e-20	96.23	Putative uncharacterized protein AtMg00285.1 OS=Ar...	[more]
Q1KKK5_MAIZE	2.090e-20	96.23	NADH dehydrogenase subunit 2 OS=Zea mays subsp. ma...	[more]
Q1KKB0_MAIZE	2.090e-20	96.23	NADH dehydrogenase subunit 2 OS=Zea mays subsp. ma...	[more]
Q0GRC1_ZEALU	2.090e-20	96.23	NADH dehydrogenase subunit 2 OS=Zea luxurians GN=n...	[more]

BLAST of Cicer_arietinum_v1_Contig1856 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 2


Match Name	E-value	Identity	Description
ATMG01320.1	1.425e-22	96.23	\| Symbols: NAD2B, NAD2.2, NAD2 \| NADH dehydrogenas...	[more]
ATMG00285.1	1.425e-22	96.23	\| Symbols: NAD2A, NAD2.1, NAD2 \| NADH dehydrogenas...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001750	NADH:ubiquinone/plastoquinone oxidoreductase	PFAM	PF00361	Oxidored_q1	coord: 28..81 score: 4.8

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>Cicer_arietinum_v1_Contig1856 ID=Cicer_arietinum_v1_Contig1856; Name=Cicer_arietinum_v1_Contig1856; organism=Cicer arietinum; type=contig; length=702bp
TGCGGTGAGAGTCGCACGTACGGTAACGAGGGGGTTCGCGTCTATACGTG
TAGTGTGGTGGTTGGGCCTACCCACCCTATTTGTTCAATGATCTATGGGT
CTACTGGAGCTACCCACTTCGATCAATTAGCCAAGATTTTTACCGGATAC
GAAATCACTGGTGCTCGATCTAGTGGTATTTTTATGGGGATTCTATCTAT
CGCTGTAGGATCCCTATTCAAGATCACTGCAGTTCCTTTTCAGGCGGCTG
TAGAACGGACGGCCGCCTATAGGTGGTAGGGTAGGGTGGGTGGTACCGCT
CAGATTGCGGCCAATCTTCCTAACCGCGCGCGGGCCGGGCTTAGAGCGCG
TGAAACTCATCACTATCTCGTAAGGGCGTTGAGACCATAGCATGTTAAAC
GAAAGCGCCGCTTTCTCTGTAGTGTTGTCACACAGCTGCCCGCCTAGAAG
AGCCACTCGCTCTGTAGTGTTGTCACACAAGATAAGCACGCCGCCCGCCA
GCTGGCCGGGCGAATCGAAGTTATCTTCCGGTCAACCGTCCACCCAGTCA
AGTGCAAAAAACACAGTAGAATCACGCAACGCACGCTGCTGGTGTGCTTC
CTGCCCGCGAGGAAAGAAGAGCGACAAGGTTTAGTTCAGATTTGACTGTT
TGCAGCATGGGAGCGGATTACCCAAAAAATCCCTGGGAACAATGAAAAAA
AA

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **Molecular Function**
Term	Definition
GO:0008137	NADH dehydrogenase (ubiquinone) activity

Vocabulary: **Biological Process**
Term	Definition
GO:0042773	ATP synthesis coupled electron transport
GO:0055114	obsolete oxidation-reduction process

Vocabulary: **INTERPRO**
Term	Definition
IPR001750	ND/Mrp_mem

Search form

Cicer_arietinum_v1_Contig1856