Cicer_arietinum_v1_Contig1944

Contig Overview


Name	Cicer_arietinum_v1_Contig1944
Unique Name	Cicer_arietinum_v1_Contig1944
Type	contig
Organism	Cicer arietinum (chickpea)
Sequence length	683

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
GR402712	EST	GR402712:1..317 +
GR398520	EST	GR398520:149..374 +
GR398024	EST	GR398024:79..361 +
GR404110	EST	GR404110:1..490 +
GR396989	EST	GR396989:1..568 -
GR408886	EST	GR408886:14..631 +
GR404841	EST	GR404841:483..601 -
GR392373	EST	GR392373:273..610 -
GR399213	EST	GR399213:71..683 -

Unigenes

This contig is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	contig

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide	2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Relationships

The following EST feature(s) are a part of this contig:


Feature Name	Unique Name	Species	Type
GR402712	GR402712	Cicer arietinum	EST
GR398520	GR398520	Cicer arietinum	EST
GR398024	GR398024	Cicer arietinum	EST
GR404110	GR404110	Cicer arietinum	EST
GR396989	GR396989	Cicer arietinum	EST
GR408886	GR408886	Cicer arietinum	EST
GR404841	GR404841	Cicer arietinum	EST
GR392373	GR392373	Cicer arietinum	EST
GR399213	GR399213	Cicer arietinum	EST

Homology

[Close]

BLAST of Cicer_arietinum_v1_Contig1944 vs. SwissProt
Match: QCR8_SOLTU (Cytochrome b-c1 complex subunit 8 OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 2.781e-27
Identity = 55/72 (76.39%), Postives = 62/72 (86.11%), Query Frame = -3

Query:  319 MGKNIIPVKSVVYALSPFQQKIMPGLWKDLPTKIHHKVSENWISAILLVAPVVGTYSYAMHFKEQEKLHHRY 534
            MGK  + +K+VVYA+SPFQQKIMPGLWKDLP KIHHKVSENWISA LL+ P+VGTYSY  HF E+EKL HRY
Sbjct:    1 MGKQPVKLKAVVYAISPFQQKIMPGLWKDLPGKIHHKVSENWISATLLLGPLVGTYSYVQHFLEKEKLEHRY 72

[Close]

BLAST of Cicer_arietinum_v1_Contig1944 vs. TrEMBL
Match: Q9FLB7_ARATH (At5g05370 OS=Arabidopsis thaliana GN=At5g05370 PE=4 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.180e-27
Identity = 59/72 (81.94%), Postives = 64/72 (88.89%), Query Frame = -3

Query:  319 MGKNIIPVKSVVYALSPFQQKIMPGLWKDLPTKIHHKVSENWISAILLVAPVVGTYSYAMHFKEQEKLHHRY 534
            MGK  + +K+VVYALSPFQQKIM GLWKDLP KIHHKVSENWIS ILLVAPVVGTYSYA +FKEQEKL HR+
Sbjct:    1 MGKQPVKLKAVVYALSPFQQKIMTGLWKDLPEKIHHKVSENWISTILLVAPVVGTYSYAQYFKEQEKLEHRF 72

[Close]

BLAST of Cicer_arietinum_v1_Contig1944 vs. TrEMBL
Match: D7LYD8_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_487332 PE=4 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.180e-27
Identity = 59/72 (81.94%), Postives = 64/72 (88.89%), Query Frame = -3

Query:  319 MGKNIIPVKSVVYALSPFQQKIMPGLWKDLPTKIHHKVSENWISAILLVAPVVGTYSYAMHFKEQEKLHHRY 534
            MGK  + +K+VVYALSPFQQKIM GLWKDLP KIHHKVSENWIS ILLVAPVVGTYSYA +FKEQEKL HR+
Sbjct:    1 MGKQPVKLKAVVYALSPFQQKIMTGLWKDLPEKIHHKVSENWISTILLVAPVVGTYSYAQYFKEQEKLEHRF 72

[Close]

BLAST of Cicer_arietinum_v1_Contig1944 vs. TrEMBL
Match: Q9LDS7_ORYSJ (Os06g0175900 protein OS=Oryza sativa subsp. japonica GN=P0015E04.32 PE=4 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.719e-27
Identity = 56/72 (77.78%), Postives = 65/72 (90.28%), Query Frame = -3

Query:  319 MGKNIIPVKSVVYALSPFQQKIMPGLWKDLPTKIHHKVSENWISAILLVAPVVGTYSYAMHFKEQEKLHHRY 534
            MGK  + +K+VVYALSPFQQK+MPGLWKD+ TKIHHKVSENWISA LL+AP+VGTY YAM++KEQEKL HRY
Sbjct:    1 MGKTPVRMKAVVYALSPFQQKVMPGLWKDITTKIHHKVSENWISATLLLAPIVGTYEYAMYYKEQEKLSHRY 72

[Close]

BLAST of Cicer_arietinum_v1_Contig1944 vs. TrEMBL
Match: B8B3G4_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_21881 PE=4 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.719e-27
Identity = 56/72 (77.78%), Postives = 65/72 (90.28%), Query Frame = -3

Query:  319 MGKNIIPVKSVVYALSPFQQKIMPGLWKDLPTKIHHKVSENWISAILLVAPVVGTYSYAMHFKEQEKLHHRY 534
            MGK  + +K+VVYALSPFQQK+MPGLWKD+ TKIHHKVSENWISA LL+AP+VGTY YAM++KEQEKL HRY
Sbjct:    1 MGKTPVRMKAVVYALSPFQQKVMPGLWKDITTKIHHKVSENWISATLLLAPIVGTYEYAMYYKEQEKLSHRY 72

[Close]

BLAST of Cicer_arietinum_v1_Contig1944 vs. TrEMBL
Match: C5Z5C6_SORBI (Putative uncharacterized protein Sb10g005110 OS=Sorghum bicolor GN=Sb10g005110 PE=4 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.112e-26
Identity = 56/72 (77.78%), Postives = 63/72 (87.50%), Query Frame = -3

Query:  319 MGKNIIPVKSVVYALSPFQQKIMPGLWKDLPTKIHHKVSENWISAILLVAPVVGTYSYAMHFKEQEKLHHRY 534
            MGK  + +K+VVYALSPFQQK+MPGLWKD+ TKIHHKV+ENWISA LLV PVVGTY YAM +KEQEKL HRY
Sbjct:    1 MGKMPVRMKAVVYALSPFQQKVMPGLWKDITTKIHHKVTENWISATLLVTPVVGTYQYAMWYKEQEKLSHRY 72

[Close]

BLAST of Cicer_arietinum_v1_Contig1944 vs. TrEMBL
Match: Q9SG91_ARATH (At3g10860 OS=Arabidopsis thaliana GN=At3g10860 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.370e-26
Identity = 57/72 (79.17%), Postives = 62/72 (86.11%), Query Frame = -3

Query:  319 MGKNIIPVKSVVYALSPFQQKIMPGLWKDLPTKIHHKVSENWISAILLVAPVVGTYSYAMHFKEQEKLHHRY 534
            MGK  + +K+VVYALSPFQQKIM GLWKDLP KIHHKVSENWISA LLV PVVGTY YA +FKEQEKL HR+
Sbjct:    1 MGKQPVKLKAVVYALSPFQQKIMTGLWKDLPEKIHHKVSENWISATLLVTPVVGTYWYAQYFKEQEKLEHRF 72

[Close]

BLAST of Cicer_arietinum_v1_Contig1944 vs. TrEMBL
Match: C5X196_SORBI (Putative uncharacterized protein Sb01g008560 OS=Sorghum bicolor GN=Sb01g008560 PE=4 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.370e-26
Identity = 56/72 (77.78%), Postives = 63/72 (87.50%), Query Frame = -3

Query:  319 MGKNIIPVKSVVYALSPFQQKIMPGLWKDLPTKIHHKVSENWISAILLVAPVVGTYSYAMHFKEQEKLHHRY 534
            MGK  + +K+VVYALSPFQQK+MPGLWKD+ TKIHHKV+ENWISA LLV PVVGTY YAM +KEQEKL HRY
Sbjct:    1 MGKVPVRMKAVVYALSPFQQKVMPGLWKDITTKIHHKVTENWISATLLVTPVVGTYQYAMWYKEQEKLSHRY 72

[Close]

BLAST of Cicer_arietinum_v1_Contig1944 vs. TrEMBL
Match: B4FET5_MAIZE (Putative uncharacterized protein OS=Zea mays PE=4 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.370e-26
Identity = 55/72 (76.39%), Postives = 63/72 (87.50%), Query Frame = -3

Query:  319 MGKNIIPVKSVVYALSPFQQKIMPGLWKDLPTKIHHKVSENWISAILLVAPVVGTYSYAMHFKEQEKLHHRY 534
            MGK  + +K+VVYALSPFQQK+MPGLWKD+ TKIHHKV+ENWISA LL+ PVVGTY YAM +KEQEKL HRY
Sbjct:    1 MGKTPVRMKAVVYALSPFQQKVMPGLWKDITTKIHHKVTENWISATLLLTPVVGTYQYAMWYKEQEKLSHRY 72

[Close]

BLAST of Cicer_arietinum_v1_Contig1944 vs. TrEMBL
Match: D7L9R7_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_897280 PE=4 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.665e-25
Identity = 56/72 (77.78%), Postives = 61/72 (84.72%), Query Frame = -3

Query:  319 MGKNIIPVKSVVYALSPFQQKIMPGLWKDLPTKIHHKVSENWISAILLVAPVVGTYSYAMHFKEQEKLHHRY 534
            MGK  + +K+VVYALSPFQQKIM GLWKDLP KIHHKVSENWISA LLV PVV TY YA +FKEQEKL HR+
Sbjct:    1 MGKQPVKLKAVVYALSPFQQKIMTGLWKDLPEKIHHKVSENWISATLLVTPVVATYWYAQYFKEQEKLEHRF 72

[Close]

BLAST of Cicer_arietinum_v1_Contig1944 vs. TrEMBL
Match: A9PCQ8_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_826300 PE=4 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.938e-25
Identity = 52/72 (72.22%), Postives = 63/72 (87.50%), Query Frame = -3

Query:  319 MGKNIIPVKSVVYALSPFQQKIMPGLWKDLPTKIHHKVSENWISAILLVAPVVGTYSYAMHFKEQEKLHHRY 534
            MGK  + +K+VVYALSPFQQK+MPGLWKDLP KIHHKVSENWISA LL+AP+VG Y+Y  +++E+EKL HRY
Sbjct:    1 MGKQPVKLKAVVYALSPFQQKVMPGLWKDLPGKIHHKVSENWISATLLLAPLVGVYTYVQNYQEKEKLEHRY 72

[Close]

BLAST of Cicer_arietinum_v1_Contig1944 vs. TAIR peptide
Match: AT5G05370.1 (| Symbols: | Cytochrome b-c1 complex, subunit 8 protein | chr5:1590977-1591869 REVERSE LENGTH=72)

HSP 1 Score: 126.331 bits (316), Expect = 1.491e-29
Identity = 59/72 (81.94%), Postives = 64/72 (88.89%), Query Frame = -3

Query:  319 MGKNIIPVKSVVYALSPFQQKIMPGLWKDLPTKIHHKVSENWISAILLVAPVVGTYSYAMHFKEQEKLHHRY 534
            MGK  + +K+VVYALSPFQQKIM GLWKDLP KIHHKVSENWIS ILLVAPVVGTYSYA +FKEQEKL HR+
Sbjct:    1 MGKQPVKLKAVVYALSPFQQKIMTGLWKDLPEKIHHKVSENWISTILLVAPVVGTYSYAQYFKEQEKLEHRF 72

[Close]

BLAST of Cicer_arietinum_v1_Contig1944 vs. TAIR peptide
Match: AT3G10860.1 (| Symbols: | Cytochrome b-c1 complex, subunit 8 protein | chr3:3399815-3400514 FORWARD LENGTH=72)

HSP 1 Score: 121.709 bits (304), Expect = 3.673e-28
Identity = 57/72 (79.17%), Postives = 62/72 (86.11%), Query Frame = -3

Query:  319 MGKNIIPVKSVVYALSPFQQKIMPGLWKDLPTKIHHKVSENWISAILLVAPVVGTYSYAMHFKEQEKLHHRY 534
            MGK  + +K+VVYALSPFQQKIM GLWKDLP KIHHKVSENWISA LLV PVVGTY YA +FKEQEKL HR+
Sbjct:    1 MGKQPVKLKAVVYALSPFQQKIMTGLWKDLPEKIHHKVSENWISATLLVTPVVGTYWYAQYFKEQEKLEHRF 72

The following BLAST results are available for this feature:

BLAST of Cicer_arietinum_v1_Contig1944 vs. SwissProt
BLAST of Cicer_arietinum_v1_Contig1944 vs. TrEMBL
BLAST of Cicer_arietinum_v1_Contig1944 vs. TAIR peptide

BLAST of Cicer_arietinum_v1_Contig1944 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 1


Match Name	E-value	Identity	Description
QCR8_SOLTU	2.781e-27	76.39	Cytochrome b-c1 complex subunit 8 OS=Solanum tuber...	[more]

BLAST of Cicer_arietinum_v1_Contig1944 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
Q9FLB7_ARATH	2.180e-27	81.94	At5g05370 OS=Arabidopsis thaliana GN=At5g05370 PE=...	[more]
D7LYD8_ARALY	2.180e-27	81.94	Putative uncharacterized protein OS=Arabidopsis ly...	[more]
Q9LDS7_ORYSJ	3.719e-27	77.78	Os06g0175900 protein OS=Oryza sativa subsp. japoni...	[more]
B8B3G4_ORYSI	3.719e-27	77.78	Putative uncharacterized protein OS=Oryza sativa s...	[more]
C5Z5C6_SORBI	4.112e-26	77.78	Putative uncharacterized protein Sb10g005110 OS=So...	[more]
Q9SG91_ARATH	5.370e-26	79.17	At3g10860 OS=Arabidopsis thaliana GN=At3g10860 PE=...	[more]
C5X196_SORBI	5.370e-26	77.78	Putative uncharacterized protein Sb01g008560 OS=So...	[more]
B4FET5_MAIZE	5.370e-26	76.39	Putative uncharacterized protein OS=Zea mays PE=4 ...	[more]
D7L9R7_ARALY	2.665e-25	77.78	Putative uncharacterized protein OS=Arabidopsis ly...	[more]
A9PCQ8_POPTR	5.938e-25	72.22	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]

BLAST of Cicer_arietinum_v1_Contig1944 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 2


Match Name	E-value	Identity	Description
AT5G05370.1	1.491e-29	81.94	\| Symbols: \| Cytochrome b-c1 complex, subunit 8 p...	[more]
AT3G10860.1	3.673e-28	79.17	\| Symbols: \| Cytochrome b-c1 complex, subunit 8 p...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004205	UcrQ	GENE3D	1.20.5.210	no description	coord: 59..114 score: 0.0
IPR020101	Cytochrome b-c1 complex, subunit 8	PFAM	PF10890	DUF2741	coord: 50..121 score: 3.3
None	No IPR available	SEG	seg	seg	coord: 25..44 score
None	No IPR available	SEG	seg	seg	coord: 8..29 score: NAcoord: 76..88 score

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>Cicer_arietinum_v1_Contig1944 ID=Cicer_arietinum_v1_Contig1944; Name=Cicer_arietinum_v1_Contig1944; organism=Cicer arietinum; type=contig; length=683bp
CGACCAAAATATGGTTGTAATTTGATAGTGATTGTTACAATAAATAAAAT
CACATACCACTCTGGAGTTTAACATATCAATTCATTTTGGCACTCAATAT
AACATTATTGATAGGACATTGATTATCTTTGGTAACATGTAGATAAGTAA
AAAGGACAAAAACTATCAATAAAATCCATCATAGCTGAAACGGCTAAAGC
TCATATATCACAACCAAAGGGCAAAAGCTAGTTTCAACAACGTCACATTA
TTGGCTGGCTAAACAAGATTAACGACAACAAACTTGAAGATTATCCAATC
CATTCCCACATGACCTCAGTACCTGTGGTGCAGCTTCTCTTGTTCCTTGA
AGTGCATAGCATACGAGTAGGTGCCGACGACGGGAGCAACTAAGAGAATG
GCGCTGATCCAATTTTCGGAGACTTTGTGATGAATTTTGGTAGGCAAATC
CTTCCAGAGACCGGGCATGATTTTCTGTTGGAAAGGAGATAGAGCATACA
CCACAGATTTCACCGGAATAATATTTTTCCCCATCTTCACCAACCACGCT
AAAGAATGAATCAACGAGAAACGAGAACGAGAACGAGAACGTGAATGAAA
ATTGCGAATGCCAAATGGAAGCAATGCCCTAACCTCTTTTTTTTTATTAT
TTCCTCTTTTCTCTTGGACTGGATTTTCCCCGC

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **Molecular Function**
Term	Definition
GO:0008121	ubiquinol-cytochrome-c reductase activity

Vocabulary: **INTERPRO**
Term	Definition
IPR004205	Cyt_bc1_su8
IPR020101	Cyt_b-c1_8-plants

Search form

Cicer_arietinum_v1_Contig1944