Cicer_arietinum_v1_Contig1946

Contig Overview
NameCicer_arietinum_v1_Contig1946
Unique NameCicer_arietinum_v1_Contig1946
Typecontig
OrganismCicer arietinum (chickpea)
Sequence length324
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
DY475215ESTDY475215:20..274 -Cicer arietinum unigene v1n/a
GR402697ESTGR402697:1..324 +Cicer arietinum unigene v1n/a
GR403624ESTGR403624:101..313 +Cicer arietinum unigene v1n/a
GR403046ESTGR403046:1..316 +Cicer arietinum unigene v1n/a
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Cicer arietinum unigene v1Cicer arietinum unigene v1contig
Analyses
This contig is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum unigene v12010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Trembl2010-12-28
InterProScan analysis for Cicer arietinum unigene v12010-12-29
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
DY475215DY475215Cicer arietinumEST
GR402697GR402697Cicer arietinumEST
GR403624GR403624Cicer arietinumEST
GR403046GR403046Cicer arietinumEST


Homology
[Close]
BLAST of Cicer_arietinum_v1_Contig1946 vs. TrEMBL
Match: B7FGM1_MEDTR (Putative uncharacterized protein (Fragment) OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.404e-17
Identity = 41/49 (83.67%), Postives = 45/49 (91.84%), Query Frame = -2 
Query:  177 KIEDVGDDEGHPTVTVKIIYCGEYNDDGKKVNKSKAGRDGSCEPNSHET 323
            KIEDVGDDEGHPTVTVKII CGEYN+DGKKVNKSK G+DG+CE N+ ET
Sbjct:   87 KIEDVGDDEGHPTVTVKIINCGEYNEDGKKVNKSKTGKDGACEGNNLET 135
[Close]
BLAST of Cicer_arietinum_v1_Contig1946 vs. TrEMBL
Match: D7SUQ8_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_8.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00035813001 PE=4 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 7.600e-9
Identity = 29/48 (60.42%), Postives = 36/48 (75.00%), Query Frame = -2 
Query:  180 KIEDVGDDEGHPTVTVKIIYCGEYNDDGKKVNKSKAGRDGSCEPNSHE 323
            +IE VGD+EG PT TVKIIYCGE  ++ +K  KSK G+D S + NSHE
Sbjct:  152 RIESVGDEEGIPTATVKIIYCGEIPEEKRKSIKSKIGKDASSDANSHE 199
[Close]
BLAST of Cicer_arietinum_v1_Contig1946 vs. TrEMBL
Match: A5AQE5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020758 PE=4 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 7.600e-9
Identity = 29/48 (60.42%), Postives = 36/48 (75.00%), Query Frame = -2 
Query:  180 KIEDVGDDEGHPTVTVKIIYCGEYNDDGKKVNKSKAGRDGSCEPNSHE 323
            +IE VGD+EG PT TVKIIYCGE  ++ +K  KSK G+D S + NSHE
Sbjct:  152 RIESVGDEEGIPTATVKIIYCGEIPEEKRKSIKSKIGKDASSDANSHE 199
[Close]
BLAST of Cicer_arietinum_v1_Contig1946 vs. TrEMBL
Match: B9RP81_RICCO (Peptidyl-prolyl cis-trans isomerase, putative OS=Ricinus communis GN=RCOM_0924670 PE=4 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 8.403e-8
Identity = 29/50 (58.00%), Postives = 35/50 (70.00%), Query Frame = -2 
Query:  180 KIEDVGDDEGHPTVTVKIIYCGEYND--DGKKVNKSKAGRDGSCEPNSHE 323
            KIE  GD+EG P VTVKII CGE+ D  D K+V+K K G+D   + NSHE
Sbjct:  156 KIESAGDEEGRPMVTVKIINCGEFKDGTDKKRVHKLKVGKDAVSDSNSHE 205
[Close]
BLAST of Cicer_arietinum_v1_Contig1946 vs. TAIR peptide
Match: AT4G32420.3 (| Symbols: | Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein | chr4:15647550-15652103 REVERSE LENGTH=837)

HSP 1 Score: 51.2174 bits (121), Expect = 1.552e-7
Identity = 24/38 (63.16%), Postives = 29/38 (76.32%), Query Frame = -2 
Query:  210 KIEDVGDDEGHPTVTVKIIYCGEYNDDGKKVNKSKAGR 323
            KIE VGD+EG PTV+VKII CGEY+ D KK +  K G+
Sbjct:  152 KIERVGDEEGKPTVSVKIIRCGEYSGDKKKSDGKKNGK 189
[Close]
BLAST of Cicer_arietinum_v1_Contig1946 vs. TAIR peptide
Match: AT4G32420.2 (| Symbols: | Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein | chr4:15647550-15650678 REVERSE LENGTH=727)

HSP 1 Score: 51.2174 bits (121), Expect = 1.552e-7
Identity = 24/38 (63.16%), Postives = 29/38 (76.32%), Query Frame = -2 
Query:  210 KIEDVGDDEGHPTVTVKIIYCGEYNDDGKKVNKSKAGR 323
            KIE VGD+EG PTV+VKII CGEY+ D KK +  K G+
Sbjct:   42 KIERVGDEEGKPTVSVKIIRCGEYSGDKKKSDGKKNGK 79
[Close]
BLAST of Cicer_arietinum_v1_Contig1946 vs. TAIR peptide
Match: AT4G32420.1 (| Symbols: | Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein | chr4:15647550-15652103 REVERSE LENGTH=837)

HSP 1 Score: 51.2174 bits (121), Expect = 1.552e-7
Identity = 24/38 (63.16%), Postives = 29/38 (76.32%), Query Frame = -2 
Query:  210 KIEDVGDDEGHPTVTVKIIYCGEYNDDGKKVNKSKAGR 323
            KIE VGD+EG PTV+VKII CGEY+ D KK +  K G+
Sbjct:  152 KIERVGDEEGKPTVSVKIIRCGEYSGDKKKSDGKKNGK 189
The following BLAST results are available for this feature:
BLAST of Cicer_arietinum_v1_Contig1946 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 4
Match NameE-valueIdentityDescription
B7FGM1_MEDTR3.404e-1783.67Putative uncharacterized protein (Fragment) OS=Med... [more]
D7SUQ8_VITVI7.600e-960.42Whole genome shotgun sequence of line PN40024, sca... [more]
A5AQE5_VITVI7.600e-960.42Putative uncharacterized protein OS=Vitis vinifera... [more]
B9RP81_RICCO8.403e-858.00Peptidyl-prolyl cis-trans isomerase, putative OS=R... [more]
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BLAST of Cicer_arietinum_v1_Contig1946 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 3
Match NameE-valueIdentityDescription
AT4G32420.31.552e-763.16| Symbols: | Cyclophilin-like peptidyl-prolyl cis... [more]
AT4G32420.21.552e-763.16| Symbols: | Cyclophilin-like peptidyl-prolyl cis... [more]
AT4G32420.11.552e-763.16| Symbols: | Cyclophilin-like peptidyl-prolyl cis... [more]
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InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR11071CYCLOPHILINcoord: 1..108
score: 1.2
NoneNo IPR availablePANTHERPTHR11071:SF43PEPTIDYL-PROLYL CIS-TRANS ISOMERASE (CYCLOPHILIN)coord: 1..108
score: 1.2
NoneNo IPR availableSEGsegsegcoord: 50..67
score: NAcoord: 70..106
score

Sequences
The following sequences are available for this feature:

contig sequence

>Cicer_arietinum_v1_Contig1946 ID=Cicer_arietinum_v1_Contig1946; Name=Cicer_arietinum_v1_Contig1946; organism=Cicer arietinum; type=contig; length=324bp
CGCCTGTCATCACTAGAGGAACTTATATCAAATGATGAGGACATATCTGA
CTCAAAATCACTATCAGTTTCCGAAAATTCCGTGTCTGAATCAAAAAAAC
TCTCCGATTCAAATGAGTGATATCTTTTCCTTTTCCTTCTGTCTTTTGAA
GATCTTTTCGGTTTTCCCTTCCTCCGTGTTTCATGACTATTGGGTTCGCA
AGATCCATCCCTTCCTGCTTTTGATTTATTTACCTTCTTCCCATCATCAT
TGTATTCGCCACAATAAATAATCTTAACAGTTACAGTTGGATGGCCTTCA
TCATCACCCACATCTTCAATTTTC
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