Cicer_arietinum_v1_Contig2048

Contig Overview
NameCicer_arietinum_v1_Contig2048
Unique NameCicer_arietinum_v1_Contig2048
Typecontig
OrganismCicer arietinum (chickpea)
Sequence length477
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
GR396582ESTGR396582:1..362 +Cicer arietinum unigene v1n/a
ES560405ESTES560405:256..477 +Cicer arietinum unigene v1n/a
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Cicer arietinum unigene v1Cicer arietinum unigene v1contig
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
GR396582GR396582Cicer arietinumEST
ES560405ES560405Cicer arietinumEST


Homology
[Close]
BLAST of Cicer_arietinum_v1_Contig2048 vs. SwissProt
Match: RT14_OENBE (Ribosomal protein S14, mitochondrial OS=Oenothera bertiana GN=RPS14 PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 9.808e-12
Identity = 33/34 (97.06%), Postives = 33/34 (97.06%), Query Frame = 2 
Query:    2 GRPRSVYEFFRISRIVFRGLASRGSLMGIKKSSW 103
            GRPRSVYEFFRISRIVFRGLASRG LMGIKKSSW
Sbjct:   66 GRPRSVYEFFRISRIVFRGLASRGPLMGIKKSSW 99
[Close]
BLAST of Cicer_arietinum_v1_Contig2048 vs. SwissProt
Match: RT14_BRANA (Ribosomal protein S14, mitochondrial OS=Brassica napus GN=RPS14 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 1.416e-10
Identity = 32/34 (94.12%), Postives = 32/34 (94.12%), Query Frame = 2 
Query:    2 GRPRSVYEFFRISRIVFRGLASRGSLMGIKKSSW 103
            GRPRSV EFFRI RIVFRGLASRGSLMGIKKSSW
Sbjct:   67 GRPRSVSEFFRIYRIVFRGLASRGSLMGIKKSSW 100
[Close]
BLAST of Cicer_arietinum_v1_Contig2048 vs. SwissProt
Match: RT14_VICFA (Ribosomal protein S14, mitochondrial OS=Vicia faba GN=RPS14 PE=3 SV=2)

HSP 1 Score: 64.6994 bits (156), Expect = 2.416e-10
Identity = 31/34 (91.18%), Postives = 31/34 (91.18%), Query Frame = 2 
Query:    2 GRPRSVYEFFRISRIVFRGLASRGSLMGIKKSSW 103
            GRPRSVYE FRISRIVFR LASRG LMGIKKSSW
Sbjct:   67 GRPRSVYELFRISRIVFRSLASRGPLMGIKKSSW 100
[Close]
BLAST of Cicer_arietinum_v1_Contig2048 vs. SwissProt
Match: RT14_MARPO (Ribosomal protein S14, mitochondrial OS=Marchantia polymorpha GN=RPS14 PE=3 SV=2)

HSP 1 Score: 57.7658 bits (138), Expect = 2.953e-8
Identity = 27/34 (79.41%), Postives = 30/34 (88.24%), Query Frame = 2 
Query:    2 GRPRSVYEFFRISRIVFRGLASRGSLMGIKKSSW 103
            GRPRSVY+ FRISRIVFR LAS+GSL+GI KS W
Sbjct:   66 GRPRSVYKLFRISRIVFRELASKGSLIGINKSCW 99
[Close]
BLAST of Cicer_arietinum_v1_Contig2048 vs. TrEMBL
Match: Q0QG47_JUNEF (Ribosomal protein S14 OS=Juncus effusus PE=4 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.651e-11
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 2 
Query:    2 GRPRSVYEFFRISRIVFRGLASRGSLMGIKKSSW 103
            GRPRSVYEFFRISRIVFRGLASRGSLMGIKKSSW
Sbjct:   67 GRPRSVYEFFRISRIVFRGLASRGSLMGIKKSSW 100
[Close]
BLAST of Cicer_arietinum_v1_Contig2048 vs. TrEMBL
Match: Q0QG46_9POAL (Ribosomal protein S14 OS=Luzula sylvatica PE=4 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.651e-11
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 2 
Query:    2 GRPRSVYEFFRISRIVFRGLASRGSLMGIKKSSW 103
            GRPRSVYEFFRISRIVFRGLASRGSLMGIKKSSW
Sbjct:   67 GRPRSVYEFFRISRIVFRGLASRGSLMGIKKSSW 100
[Close]
BLAST of Cicer_arietinum_v1_Contig2048 vs. TrEMBL
Match: Q9ZZT9_PEA (Ribosomal protein S14 OS=Pisum sativum GN=rps14 PE=4 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.387e-10
Identity = 33/34 (97.06%), Postives = 33/34 (97.06%), Query Frame = 2 
Query:    2 GRPRSVYEFFRISRIVFRGLASRGSLMGIKKSSW 103
            GRPRSVYEFFRISRIVFRGLASRG LMGIKKSSW
Sbjct:   67 GRPRSVYEFFRISRIVFRGLASRGPLMGIKKSSW 100
[Close]
BLAST of Cicer_arietinum_v1_Contig2048 vs. TrEMBL
Match: B9U3N2_CARPA (Ribosomal protein S14 OS=Carica papaya GN=rps14 PE=4 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.387e-10
Identity = 33/34 (97.06%), Postives = 33/34 (97.06%), Query Frame = 2 
Query:    2 GRPRSVYEFFRISRIVFRGLASRGSLMGIKKSSW 103
            GRPRSVYEFFRISRIVFRGLASRG LMGIKKSSW
Sbjct:   67 GRPRSVYEFFRISRIVFRGLASRGPLMGIKKSSW 100
[Close]
BLAST of Cicer_arietinum_v1_Contig2048 vs. TrEMBL
Match: B6VJT6_VITVI (Ribosomal protein S14 OS=Vitis vinifera GN=rps14 PE=4 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.387e-10
Identity = 33/34 (97.06%), Postives = 33/34 (97.06%), Query Frame = 2 
Query:    2 GRPRSVYEFFRISRIVFRGLASRGSLMGIKKSSW 103
            GRPRSVYEFFRISRIVFRGLASRG LMGIKKSSW
Sbjct:   85 GRPRSVYEFFRISRIVFRGLASRGPLMGIKKSSW 118
[Close]
BLAST of Cicer_arietinum_v1_Contig2048 vs. TrEMBL
Match: Q5MA48_TOBAC (Ribosomal protein S14 OS=Nicotiana tabacum GN=rps14 PE=4 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.549e-10
Identity = 33/43 (76.74%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:   34 NFSYRFSWISISRFFDGHKEIVLVATAKPIKQGLALHKEAKAG 162
            NFSY FSWISISR FDGHKEIVLVAT KPI+QGLA  +  K G
Sbjct:   76 NFSYPFSWISISRSFDGHKEIVLVATTKPIEQGLAPQQVYKQG 118

HSP 2 Score: 21.1718 bits (43), Expect = 3.549e-10
Identity = 8/8 (100.00%), Postives = 8/8 (100.00%), Query Frame = 2 
Query:    2 GRPRSVYE 25
            GRPRSVYE
Sbjct:   67 GRPRSVYE 74
[Close]
BLAST of Cicer_arietinum_v1_Contig2048 vs. TrEMBL
Match: Q0QG48_9POAL (Ribosomal protein S14 (Fragment) OS=Guzmania lingulata PE=4 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 1.174e-9
Identity = 32/34 (94.12%), Postives = 32/34 (94.12%), Query Frame = 2 
Query:    2 GRPRSVYEFFRISRIVFRGLASRGSLMGIKKSSW 103
            GRPRSV EFFRISRIVFRGLASRG LMGIKKSSW
Sbjct:   59 GRPRSVVEFFRISRIVFRGLASRGPLMGIKKSSW 92
[Close]
BLAST of Cicer_arietinum_v1_Contig2048 vs. TrEMBL
Match: Q0QG45_9POAL (Ribosomal protein S14 (Fragment) OS=Flagellaria indica PE=4 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 1.174e-9
Identity = 32/34 (94.12%), Postives = 32/34 (94.12%), Query Frame = 2 
Query:    2 GRPRSVYEFFRISRIVFRGLASRGSLMGIKKSSW 103
            GRPRSV EFFRISRIVFRGLASRG LMGIKKSSW
Sbjct:   60 GRPRSVVEFFRISRIVFRGLASRGPLMGIKKSSW 93
[Close]
BLAST of Cicer_arietinum_v1_Contig2048 vs. TrEMBL
Match: Q6YSL8_BRANA (Ribosomal protein S14 OS=Brassica napus GN=rps14 PE=4 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 2.003e-9
Identity = 32/34 (94.12%), Postives = 32/34 (94.12%), Query Frame = 2 
Query:    2 GRPRSVYEFFRISRIVFRGLASRGSLMGIKKSSW 103
            GRPRSV EFFRI RIVFRGLASRGSLMGIKKSSW
Sbjct:   67 GRPRSVSEFFRIYRIVFRGLASRGSLMGIKKSSW 100
[Close]
BLAST of Cicer_arietinum_v1_Contig2048 vs. TrEMBL
Match: Q0QG49_TYPLA (Ribosomal protein S14 (Fragment) OS=Typha latifolia PE=4 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 2.616e-9
Identity = 32/34 (94.12%), Postives = 32/34 (94.12%), Query Frame = 2 
Query:    2 GRPRSVYEFFRISRIVFRGLASRGSLMGIKKSSW 103
            GRPRSV EFFRISRIVFR LASRGSLMGIKKSSW
Sbjct:   65 GRPRSVVEFFRISRIVFRELASRGSLMGIKKSSW 98
[Close]
BLAST of Cicer_arietinum_v1_Contig2048 vs. TAIR peptide
Match: AT2G34520.1 (| Symbols: RPS14 | mitochondrial ribosomal protein S14 | chr2:14548218-14548712 REVERSE LENGTH=164)

HSP 1 Score: 57.3806 bits (137), Expect = 4.388e-9
Identity = 27/34 (79.41%), Postives = 30/34 (88.24%), Query Frame = 2 
Query:    2 GRPRSVYEFFRISRIVFRGLASRGSLMGIKKSSW 103
            GR RSV E FR+SRIVFRGLAS+G+LMGI KSSW
Sbjct:  131 GRSRSVTELFRVSRIVFRGLASKGALMGITKSSW 164
The following BLAST results are available for this feature:
BLAST of Cicer_arietinum_v1_Contig2048 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 4
Match NameE-valueIdentityDescription
RT14_OENBE9.808e-1297.06Ribosomal protein S14, mitochondrial OS=Oenothera ... [more]
RT14_BRANA1.416e-1094.12Ribosomal protein S14, mitochondrial OS=Brassica n... [more]
RT14_VICFA2.416e-1091.18Ribosomal protein S14, mitochondrial OS=Vicia faba... [more]
RT14_MARPO2.953e-879.41Ribosomal protein S14, mitochondrial OS=Marchantia... [more]
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BLAST of Cicer_arietinum_v1_Contig2048 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
Q0QG47_JUNEF3.651e-11100.00Ribosomal protein S14 OS=Juncus effusus PE=4 SV=1[more]
Q0QG46_9POAL3.651e-11100.00Ribosomal protein S14 OS=Luzula sylvatica PE=4 SV=... [more]
Q9ZZT9_PEA1.387e-1097.06Ribosomal protein S14 OS=Pisum sativum GN=rps14 PE... [more]
B9U3N2_CARPA1.387e-1097.06Ribosomal protein S14 OS=Carica papaya GN=rps14 PE... [more]
B6VJT6_VITVI1.387e-1097.06Ribosomal protein S14 OS=Vitis vinifera GN=rps14 P... [more]
Q5MA48_TOBAC3.549e-1076.74Ribosomal protein S14 OS=Nicotiana tabacum GN=rps1... [more]
Q0QG48_9POAL1.174e-994.12Ribosomal protein S14 (Fragment) OS=Guzmania lingu... [more]
Q0QG45_9POAL1.174e-994.12Ribosomal protein S14 (Fragment) OS=Flagellaria in... [more]
Q6YSL8_BRANA2.003e-994.12Ribosomal protein S14 OS=Brassica napus GN=rps14 P... [more]
Q0QG49_TYPLA2.616e-994.12Ribosomal protein S14 (Fragment) OS=Typha latifoli... [more]
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BLAST of Cicer_arietinum_v1_Contig2048 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
AT2G34520.14.388e-979.41| Symbols: RPS14 | mitochondrial ribosomal protein... [more]
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InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 45..56
score

Sequences
The following sequences are available for this feature:

contig sequence

>Cicer_arietinum_v1_Contig2048 ID=Cicer_arietinum_v1_Contig2048; Name=Cicer_arietinum_v1_Contig2048; organism=Cicer arietinum; type=contig; length=477bp
GGGTCGCCCTCGTTCCGTATATGAGTTCTTTCGAATTTCTCGTATCGTTT
TTCGTGGATTAGCATCTCGAGGTTCTTTGATGGGCATAAAGAAATCGTCT
TGGTAGCAACTGCCAAACCTATAAAACAAGGGTTAGCTCTGCACAAGGAA
GCGAAAGCTGGTTGTATTCCTTGCTTGTTTTTAGTGAGCGAAGCGAGCGT
GTACTGTCGAGTAAAGGCAGCCGTTGTTGGCGCCGACCCCTCTAAGCCCT
GGCACATCACAAGCCATCTTACTTAATATTTTCTAAATAGGAGGAAGGGG
CAATGTCAATTGAATAAGCGTATCAAAGAGAATGAGGTCTAGCGCCCCAG
AATACAATCGAGAAAAAGCAATAGAACAAGGTGGGAATAAGATATAACAA
ATGGGTAAGACAACCAAGGGCAATTCAACGGCTTTATGAGATAATCGGTT
ATACTATCCTGGAGTAGTTAGAGTAGT
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