Cicer_arietinum_v1_Contig2092

Contig Overview


Name	Cicer_arietinum_v1_Contig2092
Unique Name	Cicer_arietinum_v1_Contig2092
Type	contig
Organism	Cicer arietinum (chickpea)
Sequence length	565

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
GR406940	EST	GR406940:6..476 +	Cicer arietinum unigene v1	n/a
GR402604	EST	GR402604:270..539 -	Cicer arietinum unigene v1	n/a
GR392960	EST	GR392960:6..544 +	Cicer arietinum unigene v1	n/a
GR395968	EST	GR395968:1..565 +	Cicer arietinum unigene v1	n/a
GR395967	EST	GR395967:1..565 +	Cicer arietinum unigene v1	n/a

Unigenes

This contig is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	contig

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide	2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
KEGG analysis for Cicer arietinum unigene v1	2011-01-05
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Relationships

The following EST feature(s) are a part of this contig:


Feature Name	Unique Name	Species	Type
GR406940	GR406940	Cicer arietinum	EST
GR402604	GR402604	Cicer arietinum	EST
GR392960	GR392960	Cicer arietinum	EST
GR395968	GR395968	Cicer arietinum	EST
GR395967	GR395967	Cicer arietinum	EST

Homology

[Close]

BLAST of Cicer_arietinum_v1_Contig2092 vs. SwissProt
Match: RUXF_ARATH (Probable small nuclear ribonucleoprotein F OS=Arabidopsis thaliana GN=At4g30220 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 5.592e-35
Identity = 69/77 (89.61%), Postives = 72/77 (93.51%), Query Frame = 1

Query:   55 MATIPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGSFTGNLGEILIRCNNVLYLRGVP 285
            MATIPVNPKPFLNNLTGK VIVKLKWGMEYKG+L SVDSYMNLQL NTEEYI+G  TGNLGEILIRCNNVLY+RGVP
Sbjct:    1 MATIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGEILIRCNNVLYVRGVP 77

[Close]

BLAST of Cicer_arietinum_v1_Contig2092 vs. SwissProt
Match: RUXF_XENLA (Small nuclear ribonucleoprotein F OS=Xenopus laevis GN=snrpf PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 9.871e-32
Identity = 60/74 (81.08%), Postives = 71/74 (95.95%), Query Frame = 1

Query:   61 TIPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGSFTGNLGEILIRCNNVLYLRGV 282
            ++P+NPKPFLN LTGKPV+VKLKWGMEYKGYLVSVD YMN+QLANTEEYI+G+ +G+LGE+LIRCNNVLY+RGV
Sbjct:    2 SLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIRGV 75

[Close]

BLAST of Cicer_arietinum_v1_Contig2092 vs. SwissProt
Match: RUXF_MOUSE (Small nuclear ribonucleoprotein F OS=Mus musculus GN=Snrpf PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 9.871e-32
Identity = 60/74 (81.08%), Postives = 71/74 (95.95%), Query Frame = 1

Query:   61 TIPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGSFTGNLGEILIRCNNVLYLRGV 282
            ++P+NPKPFLN LTGKPV+VKLKWGMEYKGYLVSVD YMN+QLANTEEYI+G+ +G+LGE+LIRCNNVLY+RGV
Sbjct:    2 SLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIRGV 75

[Close]

BLAST of Cicer_arietinum_v1_Contig2092 vs. SwissProt
Match: RUXF_HUMAN (Small nuclear ribonucleoprotein F OS=Homo sapiens GN=SNRPF PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 9.871e-32
Identity = 60/74 (81.08%), Postives = 71/74 (95.95%), Query Frame = 1

Query:   61 TIPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGSFTGNLGEILIRCNNVLYLRGV 282
            ++P+NPKPFLN LTGKPV+VKLKWGMEYKGYLVSVD YMN+QLANTEEYI+G+ +G+LGE+LIRCNNVLY+RGV
Sbjct:    2 SLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIRGV 75

[Close]

BLAST of Cicer_arietinum_v1_Contig2092 vs. SwissProt
Match: RUXF_BOVIN (Small nuclear ribonucleoprotein F OS=Bos taurus GN=SNRPF PE=3 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 9.871e-32
Identity = 60/74 (81.08%), Postives = 71/74 (95.95%), Query Frame = 1

Query:   61 TIPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGSFTGNLGEILIRCNNVLYLRGV 282
            ++P+NPKPFLN LTGKPV+VKLKWGMEYKGYLVSVD YMN+QLANTEEYI+G+ +G+LGE+LIRCNNVLY+RGV
Sbjct:    2 SLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIRGV 75

[Close]

BLAST of Cicer_arietinum_v1_Contig2092 vs. SwissProt
Match: RUXF_DROME (Small nuclear ribonucleoprotein F OS=Drosophila melanogaster GN=DebB PE=1 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 4.899e-31
Identity = 60/75 (80.00%), Postives = 69/75 (92.00%), Query Frame = 1

Query:   58 ATIPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGSFTGNLGEILIRCNNVLYLRGV 282
            A +P+NPKPFLN LTGKPV+VKLKWG EYKG+LVSVD YMN+QLANTEE IEGS TGNLGE+LIRCNNVLY++G+
Sbjct:    3 AGMPINPKPFLNGLTGKPVLVKLKWGQEYKGFLVSVDGYMNMQLANTEEVIEGSVTGNLGEVLIRCNNVLYIKGM 77

[Close]

BLAST of Cicer_arietinum_v1_Contig2092 vs. SwissProt
Match: RUXF_CAEEL (Probable small nuclear ribonucleoprotein F OS=Caenorhabditis elegans GN=snr-5 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 6.621e-28
Identity = 59/75 (78.67%), Postives = 66/75 (88.00%), Query Frame = 1

Query:   58 ATIPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGSFTGNLGEILIRCNNVLYLRGV 282
            A  PVNPKPFLN+LTGK V+ KLKWGMEYKG LV+VDSYMNLQLA+ EEYI+G+  GNLGEILIRCNNVLY+ GV
Sbjct:    3 AVQPVNPKPFLNSLTGKFVVCKLKWGMEYKGVLVAVDSYMNLQLAHAEEYIDGNSQGNLGEILIRCNNVLYVGGV 77

[Close]

BLAST of Cicer_arietinum_v1_Contig2092 vs. SwissProt
Match: RUXF_SCHPO (Probable small nuclear ribonucleoprotein F OS=Schizosaccharomyces pombe GN=smf1 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.526e-24
Identity = 52/73 (71.23%), Postives = 61/73 (83.56%), Query Frame = 1

Query:   55 MATIPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGSFTGNLGEILIRCNNVLYL 273
            M+ +PVNPKPFL  L GKPV+V+LKWG EYKG L SVDSYMNLQL N EE ++G  TG+LGEILIRCNNVL++
Sbjct:    1 MSFVPVNPKPFLQGLIGKPVLVRLKWGQEYKGTLQSVDSYMNLQLLNAEELVDGVKTGDLGEILIRCNNVLWV 73

[Close]

BLAST of Cicer_arietinum_v1_Contig2092 vs. SwissProt
Match: RUXF_DICDI (Small nuclear ribonucleoprotein F OS=Dictyostelium discoideum GN=snrpf PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.596e-21
Identity = 48/70 (68.57%), Postives = 59/70 (84.29%), Query Frame = 1

Query:   76 PKPFLNNLTGKPVIVKLKWG-MEYKGYLVSVDSYMNLQLANTEEYIEGSFTGNLGEILIRCNNVLYLRGV 282
            PKPFL +L GK + V+LKWG MEY+G L SVDSYMNLQLA TEE+I+G+  G LGE+LIRCNNVL++RG+
Sbjct:    9 PKPFLYDLKGKKIAVRLKWGGMEYRGILASVDSYMNLQLAATEEWIDGANKGPLGEVLIRCNNVLFVRGI 78

[Close]

BLAST of Cicer_arietinum_v1_Contig2092 vs. SwissProt
Match: RUXF_NEUCR (Probable small nuclear ribonucleoprotein F OS=Neurospora crassa GN=B2O8.190 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.746e-20
Identity = 45/75 (60.00%), Postives = 60/75 (80.00%), Query Frame = 1

Query:   55 MATIPVNPKPFLNNLTGKPVIVKLKWG-MEYKGYLVSVDSYMNLQLANTEEYIEGSFTGNLGEILIRCNNVLYLR 276
            M+ +PVNP+PFL +L    V ++LKWG  EY G LVS+DSYMN+QL++T+EYI   FTG LG++LIRCNNVLY++
Sbjct:    1 MSFVPVNPRPFLQDLVNSFVTIRLKWGETEYVGRLVSIDSYMNIQLSDTKEYINRKFTGALGQVLIRCNNVLYIK 75

[Close]

BLAST of Cicer_arietinum_v1_Contig2092 vs. TrEMBL
Match: C6SYQ7_SOYBN (Putative uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.466e-37
Identity = 76/77 (98.70%), Postives = 76/77 (98.70%), Query Frame = 1

Query:   55 MATIPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGSFTGNLGEILIRCNNVLYLRGVP 285
            MATIPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEG FTGNLGEILIRCNNVLYLRGVP
Sbjct:    1 MATIPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGQFTGNLGEILIRCNNVLYLRGVP 77

[Close]

BLAST of Cicer_arietinum_v1_Contig2092 vs. TrEMBL
Match: C6SWM0_SOYBN (Putative uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.466e-37
Identity = 76/77 (98.70%), Postives = 76/77 (98.70%), Query Frame = 1

Query:   55 MATIPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGSFTGNLGEILIRCNNVLYLRGVP 285
            MATIPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEG FTGNLGEILIRCNNVLYLRGVP
Sbjct:    1 MATIPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGQFTGNLGEILIRCNNVLYLRGVP 77

[Close]

BLAST of Cicer_arietinum_v1_Contig2092 vs. TrEMBL
Match: Q6ETN4_ORYSJ (Os02g0177500 protein OS=Oryza sativa subsp. japonica GN=P0504A05.22 PE=4 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.241e-36
Identity = 73/77 (94.81%), Postives = 76/77 (98.70%), Query Frame = 1

Query:   55 MATIPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGSFTGNLGEILIRCNNVLYLRGVP 285
            MAT+PVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYI+G F+GNLGEILIRCNNVLYLRGVP
Sbjct:    1 MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIDGQFSGNLGEILIRCNNVLYLRGVP 77

[Close]

BLAST of Cicer_arietinum_v1_Contig2092 vs. TrEMBL
Match: Q2R066_ORYSJ (Os11g0657300 protein OS=Oryza sativa subsp. japonica GN=Os11g0657300 PE=4 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.241e-36
Identity = 73/77 (94.81%), Postives = 76/77 (98.70%), Query Frame = 1

Query:   55 MATIPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGSFTGNLGEILIRCNNVLYLRGVP 285
            MAT+PVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYI+G F+GNLGEILIRCNNVLYLRGVP
Sbjct:    1 MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIDGQFSGNLGEILIRCNNVLYLRGVP 77

[Close]

BLAST of Cicer_arietinum_v1_Contig2092 vs. TrEMBL
Match: B8BLN4_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_36896 PE=4 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.241e-36
Identity = 73/77 (94.81%), Postives = 76/77 (98.70%), Query Frame = 1

Query:   55 MATIPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGSFTGNLGEILIRCNNVLYLRGVP 285
            MAT+PVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYI+G F+GNLGEILIRCNNVLYLRGVP
Sbjct:    1 MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIDGQFSGNLGEILIRCNNVLYLRGVP 77

[Close]

BLAST of Cicer_arietinum_v1_Contig2092 vs. TrEMBL
Match: A9NPI0_PICSI (Putative uncharacterized protein OS=Picea sitchensis PE=4 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.117e-36
Identity = 72/77 (93.51%), Postives = 76/77 (98.70%), Query Frame = 1

Query:   55 MATIPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGSFTGNLGEILIRCNNVLYLRGVP 285
            MAT+PVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLA+TEEYI+G FTGNLGE+LIRCNNVLYLRGVP
Sbjct:    1 MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLASTEEYIDGQFTGNLGEVLIRCNNVLYLRGVP 77

[Close]

BLAST of Cicer_arietinum_v1_Contig2092 vs. TrEMBL
Match: D7SYP2_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_220.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00003994001 PE=4 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.765e-36
Identity = 72/77 (93.51%), Postives = 76/77 (98.70%), Query Frame = 1

Query:   55 MATIPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGSFTGNLGEILIRCNNVLYLRGVP 285
            MAT+P+NPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLAN+EEYI+G FTGNLGEILIRCNNVLYLRGVP
Sbjct:    1 MATVPLNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANSEEYIDGQFTGNLGEILIRCNNVLYLRGVP 77

[Close]

BLAST of Cicer_arietinum_v1_Contig2092 vs. TrEMBL
Match: B4FJ31_MAIZE (Putative uncharacterized protein OS=Zea mays PE=4 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 6.160e-36
Identity = 71/77 (92.21%), Postives = 75/77 (97.40%), Query Frame = 1

Query:   55 MATIPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGSFTGNLGEILIRCNNVLYLRGVP 285
            MAT+PVNPKPFLNNLTGKPVIVKLKWGMEYKGYL SVDSYMNLQLANTEEYI+G F+GNLGEILIRCNNV+YLRGVP
Sbjct:    1 MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLASVDSYMNLQLANTEEYIDGQFSGNLGEILIRCNNVMYLRGVP 77

[Close]

BLAST of Cicer_arietinum_v1_Contig2092 vs. TrEMBL
Match: B6TPP2_MAIZE (Small nuclear ribonucleoprotein F OS=Zea mays PE=4 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 8.045e-36
Identity = 70/77 (90.91%), Postives = 75/77 (97.40%), Query Frame = 1

Query:   55 MATIPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGSFTGNLGEILIRCNNVLYLRGVP 285
            MAT+PVNPKPFLNNLTGKP+IVKLKWGMEYKGYL SVDSYMNLQLANTEEYI+G F+GNLGEILIRCNNV+YLRGVP
Sbjct:    1 MATVPVNPKPFLNNLTGKPIIVKLKWGMEYKGYLASVDSYMNLQLANTEEYIDGQFSGNLGEILIRCNNVMYLRGVP 77

[Close]

BLAST of Cicer_arietinum_v1_Contig2092 vs. TrEMBL
Match: Q2R065_ORYSJ (Small nuclear ribonucleoprotein F, putative, expressed OS=Oryza sativa subsp. japonica GN=LOC_Os11g43620 PE=4 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.372e-35
Identity = 71/75 (94.67%), Postives = 74/75 (98.67%), Query Frame = 1

Query:   61 TIPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGSFTGNLGEILIRCNNVLYLRGVP 285
            T+PVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYI+G F+GNLGEILIRCNNVLYLRGVP
Sbjct:    2 TVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIDGQFSGNLGEILIRCNNVLYLRGVP 76

[Close]

BLAST of Cicer_arietinum_v1_Contig2092 vs. TAIR peptide
Match: AT4G30220.1 (| Symbols: RUXF | small nuclear ribonucleoprotein F | chr4:14803100-14804259 REVERSE LENGTH=88)

HSP 1 Score: 147.132 bits (370), Expect = 5.960e-36
Identity = 69/77 (89.61%), Postives = 72/77 (93.51%), Query Frame = 1

Query:   55 MATIPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGSFTGNLGEILIRCNNVLYLRGVP 285
            MATIPVNPKPFLNNLTGK VIVKLKWGMEYKG+L SVDSYMNLQL NTEEYI+G  TGNLGEILIRCNNVLY+RGVP
Sbjct:    1 MATIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGEILIRCNNVLYVRGVP 77

[Close]

BLAST of Cicer_arietinum_v1_Contig2092 vs. TAIR peptide
Match: AT4G30220.2 (| Symbols: RUXF | small nuclear ribonucleoprotein F | chr4:14803100-14804259 REVERSE LENGTH=96)

HSP 1 Score: 144.05 bits (362), Expect = 5.045e-35
Identity = 67/77 (87.01%), Postives = 71/77 (92.21%), Query Frame = 1

Query:   55 MATIPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGSFTGNLGEILIRCNNVLYLRGVP 285
            + TIPVNPKPFLNNLTGK VIVKLKWGMEYKG+L SVDSYMNLQL NTEEYI+G  TGNLGEILIRCNNVLY+RGVP
Sbjct:    9 LQTIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGEILIRCNNVLYVRGVP 85

[Close]

BLAST of Cicer_arietinum_v1_Contig2092 vs. TAIR peptide
Match: AT2G14285.1 (| Symbols: | Small nuclear ribonucleoprotein family protein | chr2:6052612-6053500 REVERSE LENGTH=61)

HSP 1 Score: 93.9745 bits (232), Expect = 5.988e-20
Identity = 43/50 (86.00%), Postives = 46/50 (92.00%), Query Frame = 1

Query:  136 MEYKGYLVSVDSYMNLQLANTEEYIEGSFTGNLGEILIRCNNVLYLRGVP 285
            MEYKG+L SVDSYMNLQL NTEEYI+G  TGNLGEILIRCNNVLY+RGVP
Sbjct:    1 MEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGEILIRCNNVLYVRGVP 50

[Close]

BLAST of Cicer_arietinum_v1_Contig2092 vs. TAIR peptide
Match: AT2G43810.2 (| Symbols: | Small nuclear ribonucleoprotein family protein | chr2:18149725-18150879 FORWARD LENGTH=91)

HSP 1 Score: 72.0182 bits (175), Expect = 2.437e-13
Identity = 30/66 (45.45%), Postives = 43/66 (65.15%), Query Frame = 1

Query:   76 PKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGSFTGNLGEILIRCNNVLYL 273
            P  FL ++ GKPV+VKL  G++Y+G L  +D YMN+ +  TEEY+ G      G+  +R NNVLY+
Sbjct:   15 PADFLKSIRGKPVVVKLNSGVDYRGILTCLDGYMNIAMEQTEEYVNGQLKNTYGDAFVRGNNVLYI 80

[Close]

BLAST of Cicer_arietinum_v1_Contig2092 vs. TAIR peptide
Match: AT2G43810.1 (| Symbols: | Small nuclear ribonucleoprotein family protein | chr2:18149725-18150879 FORWARD LENGTH=91)

HSP 1 Score: 72.0182 bits (175), Expect = 2.437e-13
Identity = 30/66 (45.45%), Postives = 43/66 (65.15%), Query Frame = 1

Query:   76 PKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGSFTGNLGEILIRCNNVLYL 273
            P  FL ++ GKPV+VKL  G++Y+G L  +D YMN+ +  TEEY+ G      G+  +R NNVLY+
Sbjct:   15 PADFLKSIRGKPVVVKLNSGVDYRGILTCLDGYMNIAMEQTEEYVNGQLKNTYGDAFVRGNNVLYI 80

[Close]

BLAST of Cicer_arietinum_v1_Contig2092 vs. TAIR peptide
Match: AT3G59810.1 (| Symbols: | Small nuclear ribonucleoprotein family protein | chr3:22096841-22097666 FORWARD LENGTH=91)

HSP 1 Score: 71.2478 bits (173), Expect = 4.156e-13
Identity = 31/69 (44.93%), Postives = 44/69 (63.77%), Query Frame = 1

Query:   76 PKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGSFTGNLGEILIRCNNVLYLRGV 282
            P  FL ++ G+PV+VKL  G++Y+G L  +D YMN+ +  TEEY+ G      G+  IR NNVLY+  V
Sbjct:   15 PADFLKSIRGRPVVVKLNSGVDYRGTLTCLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTV 83

The following BLAST results are available for this feature:

BLAST of Cicer_arietinum_v1_Contig2092 vs. SwissProt
BLAST of Cicer_arietinum_v1_Contig2092 vs. TrEMBL
BLAST of Cicer_arietinum_v1_Contig2092 vs. TAIR peptide

BLAST of Cicer_arietinum_v1_Contig2092 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 10


Match Name	E-value	Identity	Description
RUXF_ARATH	5.592e-35	89.61	Probable small nuclear ribonucleoprotein F OS=Arab...	[more]
RUXF_XENLA	9.871e-32	81.08	Small nuclear ribonucleoprotein F OS=Xenopus laevi...	[more]
RUXF_MOUSE	9.871e-32	81.08	Small nuclear ribonucleoprotein F OS=Mus musculus ...	[more]
RUXF_HUMAN	9.871e-32	81.08	Small nuclear ribonucleoprotein F OS=Homo sapiens ...	[more]
RUXF_BOVIN	9.871e-32	81.08	Small nuclear ribonucleoprotein F OS=Bos taurus GN...	[more]
RUXF_DROME	4.899e-31	80.00	Small nuclear ribonucleoprotein F OS=Drosophila me...	[more]
RUXF_CAEEL	6.621e-28	78.67	Probable small nuclear ribonucleoprotein F OS=Caen...	[more]
RUXF_SCHPO	1.526e-24	71.23	Probable small nuclear ribonucleoprotein F OS=Schi...	[more]
RUXF_DICDI	4.596e-21	68.57	Small nuclear ribonucleoprotein F OS=Dictyostelium...	[more]
RUXF_NEUCR	1.746e-20	60.00	Probable small nuclear ribonucleoprotein F OS=Neur...	[more]

BLAST of Cicer_arietinum_v1_Contig2092 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
C6SYQ7_SOYBN	1.466e-37	98.70	Putative uncharacterized protein OS=Glycine max PE...	[more]
C6SWM0_SOYBN	1.466e-37	98.70	Putative uncharacterized protein OS=Glycine max PE...	[more]
Q6ETN4_ORYSJ	1.241e-36	94.81	Os02g0177500 protein OS=Oryza sativa subsp. japoni...	[more]
Q2R066_ORYSJ	1.241e-36	94.81	Os11g0657300 protein OS=Oryza sativa subsp. japoni...	[more]
B8BLN4_ORYSI	1.241e-36	94.81	Putative uncharacterized protein OS=Oryza sativa s...	[more]
A9NPI0_PICSI	2.117e-36	93.51	Putative uncharacterized protein OS=Picea sitchens...	[more]
D7SYP2_VITVI	2.765e-36	93.51	Whole genome shotgun sequence of line PN40024, sca...	[more]
B4FJ31_MAIZE	6.160e-36	92.21	Putative uncharacterized protein OS=Zea mays PE=4 ...	[more]
B6TPP2_MAIZE	8.045e-36	90.91	Small nuclear ribonucleoprotein F OS=Zea mays PE=4...	[more]
Q2R065_ORYSJ	1.372e-35	94.67	Small nuclear ribonucleoprotein F, putative, expre...	[more]

BLAST of Cicer_arietinum_v1_Contig2092 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 6


Match Name	E-value	Identity	Description
AT4G30220.1	5.960e-36	89.61	\| Symbols: RUXF \| small nuclear ribonucleoprotein ...	[more]
AT4G30220.2	5.045e-35	87.01	\| Symbols: RUXF \| small nuclear ribonucleoprotein ...	[more]
AT2G14285.1	5.988e-20	86.00	\| Symbols: \| Small nuclear ribonucleoprotein fami...	[more]
AT2G43810.2	2.437e-13	45.45	\| Symbols: \| Small nuclear ribonucleoprotein fami...	[more]
AT2G43810.1	2.437e-13	45.45	\| Symbols: \| Small nuclear ribonucleoprotein fami...	[more]
AT3G59810.1	4.156e-13	44.93	\| Symbols: \| Small nuclear ribonucleoprotein fami...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	Like-Sm ribonucleoprotein (LSM) domain	PFAM	PF01423	LSM	coord: 29..91 score: 5.1
IPR006649	Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type	SMART	SM00651	no description	coord: 28..93 score: 1
IPR010920	Like-Sm ribonucleoprotein (LSM)-related domain	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 24..96 score: 3.5
None	No IPR available	GENE3D	2.30.30.100	no description	coord: 29..94 score: 1.4
None	No IPR available	PANTHER	PTHR11021	SMALL NUCLEAR RIBONUCLEOPROTEIN F (SNRNP-F)	coord: 13..105 score: 2
None	No IPR available	SEG	seg	seg	coord: 96..106 score

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>Cicer_arietinum_v1_Contig2092 ID=Cicer_arietinum_v1_Contig2092; Name=Cicer_arietinum_v1_Contig2092; organism=Cicer arietinum; type=contig; length=565bp
GCGGGGGAGACAGAGAGAAGAAATCCTTCACCATTTCAGCGTCTCCGTTC
TACAATGGCCACTATACCTGTTAATCCCAAACCCTTTTTGAACAATTTGA
CTGGGAAGCCTGTTATTGTGAAACTAAAATGGGGAATGGAGTACAAAGGT
TATCTTGTATCAGTTGATTCGTATATGAACTTGCAGCTGGCCAACACTGA
AGAGTACATTGAGGGATCATTTACTGGAAATTTAGGAGAGATTTTGATCA
GATGCAACAATGTTCTCTACCTTCGTGGTGTACCAGAAGATGAAGAAATT
GAAGATGCTGCAGAAGACTAGAATGAAAAAAATCAGCTAACTGTTATGGG
CATAAATAGAACTCAATTTGTTTTTACTGTTATTGTATCTTCACCTAAAA
GCAGGCGTTTATCTTTGTGTAGTTATGTGTAGAGATTTGAATCAATGATT
CCCTTGATGTTGGCGTGATTCAACGGAAATCTGATGTTGTTTAGACTCTT
TTTGAAGTAACATATAGTTTTATGTGGATTTTAAAGAACAAAAAACACAA
TCAAAGGCGGAAATA

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR001163	Sm_dom_euk/arc
IPR006649	Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type
IPR010920	LSM_dom_sf

Search form

Cicer_arietinum_v1_Contig2092