Cicer_arietinum_v1_Contig216

Contig Overview
NameCicer_arietinum_v1_Contig216
Unique NameCicer_arietinum_v1_Contig216
Typecontig
OrganismCicer arietinum (chickpea)
Sequence length586
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
HO063151ESTHO063151:2..336 +
GR402629ESTGR402629:32..367 +
GR396070ESTGR396070:65..553 +
EL814494ESTEL814494:198..530 +
HO065028ESTHO065028:1..589 +
EH059271ESTEH059271:314..582 +
GR406973ESTGR406973:85..588 -
GR402740ESTGR402740:273..586 -
GR403684ESTGR403684:66..580 +
HO065339ESTHO065339:17..573 +
GR403290ESTGR403290:29..573 +
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Cicer arietinum unigene v1Cicer arietinum unigene v1contig
Analyses
This contig is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum unigene v12010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Trembl2010-12-28
InterProScan analysis for Cicer arietinum unigene v12010-12-29
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
HO063151HO063151Cicer arietinumEST
GR402629GR402629Cicer arietinumEST
GR396070GR396070Cicer arietinumEST
EL814494EL814494Cicer arietinumEST
HO065028HO065028Cicer arietinumEST
EH059271EH059271Cicer arietinumEST
GR406973GR406973Cicer arietinumEST
GR402740GR402740Cicer arietinumEST
GR403684GR403684Cicer arietinumEST
HO065339HO065339Cicer arietinumEST
GR403290GR403290Cicer arietinumEST


Homology
BLAST of Cicer_arietinum_v1_Contig216 vs. TrEMBL
Match: B9S514_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1719540 PE=4 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.042e-16
Identity = 43/51 (84.31%), Postives = 46/51 (90.20%), Query Frame = 1
Query:  148 RGNQRDKDRERAQARANNKSRNPKSDGLTPEQRRERDAKALQEKTARKAAQ 300
            RGNQR++DRERAQARA  K +NPK DGLTPEQRRERDAKALQEK ARKAAQ
Sbjct:   12 RGNQRERDRERAQARAGQKPKNPKDDGLTPEQRRERDAKALQEKLARKAAQ 62          
BLAST of Cicer_arietinum_v1_Contig216 vs. TrEMBL
Match: D7T5A5_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_189.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00003386001 PE=4 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.760e-16
Identity = 43/53 (81.13%), Postives = 46/53 (86.79%), Query Frame = 1
Query:  148 RGNQRDKDRERAQARANNKSRNPKSDGLTPEQRRERDAKALQEKTARKAAQRA 306
            RGNQRD+DRERAQAR  +KS+  K DGLTPEQRRERDAKALQEK ARKAAQ A
Sbjct:   34 RGNQRDRDRERAQARIGHKSKQAKDDGLTPEQRRERDAKALQEKAARKAAQAA 86          
BLAST of Cicer_arietinum_v1_Contig216 vs. TrEMBL
Match: A9PAB8_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=4 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.258e-15
Identity = 44/55 (80.00%), Postives = 48/55 (87.27%), Query Frame = 1
Query:  142 MSRGNQRDKDRERAQARANNKSRNPKSDGLTPEQRRERDAKALQEKTARKAAQRA 306
            M+RGNQR+KDRERAQAR   K +N K DGLTPEQRRERDAKALQEKTA+KAAQ A
Sbjct:    1 MARGNQREKDRERAQARNGGKGKN-KDDGLTPEQRRERDAKALQEKTAKKAAQAA 54          
BLAST of Cicer_arietinum_v1_Contig216 vs. TrEMBL
Match: B9GFX0_POPTR (Predicted protein (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_641924 PE=4 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.911e-14
Identity = 42/54 (77.78%), Postives = 44/54 (81.48%), Query Frame = 1
Query:  145 SRGNQRDKDRERAQARANNKSRNPKSDGLTPEQRRERDAKALQEKTARKAAQRA 306
            SRGNQR+KDRERAQAR  NK    K DGLT EQRRERDAKALQEK A+KAAQ A
Sbjct:    2 SRGNQREKDRERAQARGGNKVNKGKDDGLTHEQRRERDAKALQEKAAKKAAQAA 55          
BLAST of Cicer_arietinum_v1_Contig216 vs. TrEMBL
Match: Q94K36_ARATH (Putative uncharacterized protein AT3g24100 OS=Arabidopsis thaliana GN=At3g24100 PE=4 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.264e-14
Identity = 41/55 (74.55%), Postives = 47/55 (85.45%), Query Frame = 1
Query:  142 MSRGNQRDKDRERAQARANNKSRNPKSDGLTPEQRRERDAKALQEKTARKAAQRA 306
            M+RG+QR++DRERA AR   K +N K DGLTPEQRRERDAKALQEKTA+KAAQ A
Sbjct:    1 MTRGSQRERDRERALARTGGKGKN-KDDGLTPEQRRERDAKALQEKTAKKAAQAA 54          
BLAST of Cicer_arietinum_v1_Contig216 vs. TrEMBL
Match: C6SZT0_SOYBN (Putative uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.618e-13
Identity = 41/55 (74.55%), Postives = 46/55 (83.64%), Query Frame = 1
Query:  142 MSRGNQRDKDRERAQARANNKSRNPKSDGLTPEQRRERDAKALQEKTARKAAQRA 306
            M+RG+QRD+DRERAQAR   K +  K DGLTPEQRRERDAKALQEK A+KAAQ A
Sbjct:    1 MTRGSQRDRDRERAQARTGAKGKQ-KDDGLTPEQRRERDAKALQEKAAKKAAQGA 54          
BLAST of Cicer_arietinum_v1_Contig216 vs. TrEMBL
Match: D7SNS7_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_29.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00021052001 PE=4 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.760e-13
Identity = 39/55 (70.91%), Postives = 44/55 (80.00%), Query Frame = 1
Query:  142 MSRGNQRDKDRERAQARANNKSRNPKSDGLTPEQRRERDAKALQEKTARKAAQRA 306
            +SRGNQRD+DRERA +R  +K    K DGLTPEQRRERDAKALQEK A+KA Q A
Sbjct:   30 ISRGNQRDRDRERAASRNPSKGSKGKDDGLTPEQRRERDAKALQEKAAKKAGQAA 84          
BLAST of Cicer_arietinum_v1_Contig216 vs. TrEMBL
Match: D7MHE1_ARALY (Expressed protein (Fragment) OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_493552 PE=4 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.031e-13
Identity = 39/55 (70.91%), Postives = 46/55 (83.64%), Query Frame = 1
Query:  142 MSRGNQRDKDRERAQARANNKSRNPKSDGLTPEQRRERDAKALQEKTARKAAQRA 306
            M+RG+QR++DRERA ARA  K +N + DGLTPEQRRERD KALQEK A+KAAQ A
Sbjct:    1 MTRGSQRERDRERAAARAGGKGKNAE-DGLTPEQRRERDGKALQEKAAKKAAQAA 54          
BLAST of Cicer_arietinum_v1_Contig216 vs. TrEMBL
Match: A9RF26_PHYPA (Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_65287 PE=4 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.031e-13
Identity = 40/53 (75.47%), Postives = 45/53 (84.91%), Query Frame = 1
Query:  142 MSRGNQRDKDRERAQARANNKSRNPKSDGLTPEQRRERDAKALQEKTARKAAQ 300
            M+RGNQR+KDRERA ARA  K+   + DGLTPEQRRERDAKALQEK A+KAAQ
Sbjct:   46 MTRGNQREKDRERAAARA--KTTKARDDGLTPEQRRERDAKALQEKMAKKAAQ 96          
BLAST of Cicer_arietinum_v1_Contig216 vs. TrEMBL
Match: Q9LRN7_ARATH (Genomic DNA, chromosome 3, P1 clone:MUJ8 OS=Arabidopsis thaliana PE=4 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.370e-12
Identity = 39/52 (75.00%), Postives = 44/52 (84.62%), Query Frame = 1
Query:  151 GNQRDKDRERAQARANNKSRNPKSDGLTPEQRRERDAKALQEKTARKAAQRA 306
            G+QR++DRERA AR   K +N K DGLTPEQRRERDAKALQEKTA+KAAQ A
Sbjct:   39 GSQRERDRERALARTGGKGKN-KDDGLTPEQRRERDAKALQEKTAKKAAQAA 89          
BLAST of Cicer_arietinum_v1_Contig216 vs. TAIR peptide
Match: AT3G24100.1 (| Symbols: | Uncharacterised protein family SERF | chr3:8703373-8704045 FORWARD LENGTH=69)

HSP 1 Score: 80.8777 bits (198), Expect = 5.563e-16
Identity = 41/55 (74.55%), Postives = 47/55 (85.45%), Query Frame = 1
Query:  142 MSRGNQRDKDRERAQARANNKSRNPKSDGLTPEQRRERDAKALQEKTARKAAQRA 306
            M+RG+QR++DRERA AR   K +N K DGLTPEQRRERDAKALQEKTA+KAAQ A
Sbjct:    1 MTRGSQRERDRERALARTGGKGKN-KDDGLTPEQRRERDAKALQEKTAKKAAQAA 54          
BLAST of Cicer_arietinum_v1_Contig216 vs. TAIR peptide
Match: AT4G13615.1 (| Symbols: | Uncharacterised protein family SERF | chr4:7924353-7925017 FORWARD LENGTH=71)

HSP 1 Score: 76.6406 bits (187), Expect = 1.049e-14
Identity = 39/55 (70.91%), Postives = 45/55 (81.82%), Query Frame = 1
Query:  142 MSRGNQRDKDRERAQARANNKSRNPKSDGLTPEQRRERDAKALQEKTARKAAQRA 306
            M+RG+QR++DRERA ARA  K +N   DGLTPEQRRERD KALQEK A+KAAQ A
Sbjct:    1 MTRGSQRERDRERAAARAGGKGKNG-DDGLTPEQRRERDGKALQEKAAKKAAQAA 54          
The following BLAST results are available for this feature:
BLAST of Cicer_arietinum_v1_Contig216 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
B9S514_RICCO2.042e-1684.31Putative uncharacterized protein OS=Ricinus commun... [more]
D7T5A5_VITVI7.760e-1681.13Whole genome shotgun sequence of line PN40024, sca... [more]
A9PAB8_POPTR2.258e-1580.00Putative uncharacterized protein OS=Populus tricho... [more]
B9GFX0_POPTR1.911e-1477.78Predicted protein (Fragment) OS=Populus trichocarp... [more]
Q94K36_ARATH7.264e-1474.55Putative uncharacterized protein AT3g24100 OS=Arab... [more]
C6SZT0_SOYBN1.618e-1374.55Putative uncharacterized protein OS=Glycine max PE... [more]
D7SNS7_VITVI2.760e-1370.91Whole genome shotgun sequence of line PN40024, sca... [more]
D7MHE1_ARALY8.031e-1370.91Expressed protein (Fragment) OS=Arabidopsis lyrata... [more]
A9RF26_PHYPA8.031e-1375.47Predicted protein OS=Physcomitrella patens subsp. ... [more]
Q9LRN7_ARATH1.370e-1275.00Genomic DNA, chromosome 3, P1 clone:MUJ8 OS=Arabid... [more]
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BLAST of Cicer_arietinum_v1_Contig216 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 2
Match NameE-valueIdentityDescription
AT3G24100.15.563e-1674.55| Symbols: | Uncharacterised protein family SERF ... [more]
AT4G13615.11.049e-1470.91| Symbols: | Uncharacterised protein family SERF ... [more]
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InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007513Uncharacterised protein family SERFPFAMPF044194F5coord: 12..67
score: 4.3
NoneNo IPR availableSEGsegsegcoord: 67..77
score
NoneNo IPR availableSEGsegsegcoord: 13..36
score
NoneNo IPR availableSEGsegsegcoord: 2..14
score: NAcoord: 43..54
score

Sequences
The following sequences are available for this feature:

contig sequence

>Cicer_arietinum_v1_Contig216 ID=Cicer_arietinum_v1_Contig216; Name=Cicer_arietinum_v1_Contig216; organism=Cicer arietinum; type=contig; length=586bp
TAGCGTGGTCGCGGCCGAGGTACGCGGGGATTGCACAATTCAATCTTTCT
CTCATAACTTCATTCTTTTTTTTCATCTCTTTCGTTTTTCTTTTCCAGGT
CTTTTTAATTTACGCTCTCAACATCATTCGATCAATCAATAATGTCTCGC
GGTAATCAAAGAGATAAAGATCGTGAAAGGGCTCAAGCAAGAGCCAATAA
CAAATCTAGGAACCCAAAGAGTGATGGGTTAACACCTGAACAACGGAGAG
AAAGGGATGCAAAAGCATTACAAGAGAAAACGGCAAGGAAAGCTGCACAA
CGTGCTGGAGGGTGTAATATGGGTGGTGGTGGTAGTGGAGACAAACATTA
GGAAATAATAATAAAAATTATTCTAATCGAAGGTTTAGTGGGTAATTAAG
CTAGGGAAAAAGTTTGTAATTGTATTTGTGTAATTTGATTTGATATGGGT
TTATGGTTTTTAAGTCATCTGCTTGTGTCGCTTATTTATGATTTATGGTG
TGTTGGCTTTTCACCTTTTACTTCTATCTCATTTGGGTGTATTTCTAGCA
TTTTGTAATAATATTTTTTATTTTTTTTTATTCCNT
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR007513SERF-like_N