Cicer_arietinum_v1_Contig2273

Contig Overview


Name	Cicer_arietinum_v1_Contig2273
Unique Name	Cicer_arietinum_v1_Contig2273
Type	contig
Organism	Cicer arietinum (chickpea)
Sequence length	548

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
GR392190	EST	GR392190:6..344 +
GR398831	EST	GR398831:1..513 -
GR396822	EST	GR396822:445..555 -
GR402425	EST	GR402425:50..507 -
HO065073	EST	HO065073:36..548 +
GR396676	EST	GR396676:6..530 +
GR396649	EST	GR396649:6..548 +
GR392209	EST	GR392209:231..546 +
GR406854	EST	GR406854:50..546 -

Unigenes

This contig is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	contig

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
KEGG analysis for Cicer arietinum unigene v1	2011-01-05
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide	2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Relationships

The following EST feature(s) are a part of this contig:


Feature Name	Unique Name	Species	Type
GR392190	GR392190	Cicer arietinum	EST
GR398831	GR398831	Cicer arietinum	EST
GR396822	GR396822	Cicer arietinum	EST
GR402425	GR402425	Cicer arietinum	EST
HO065073	HO065073	Cicer arietinum	EST
GR396676	GR396676	Cicer arietinum	EST
GR396649	GR396649	Cicer arietinum	EST
GR392209	GR392209	Cicer arietinum	EST
GR406854	GR406854	Cicer arietinum	EST

Homology

[Close]

BLAST of Cicer_arietinum_v1_Contig2273 vs. SwissProt
Match: RS272_ARATH (40S ribosomal protein S27-2 OS=Arabidopsis thaliana GN=RPS27B PE=2 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 1.229e-36
Identity = 71/86 (82.56%), Postives = 74/86 (86.05%), Query Frame = 1

Query:   79 MVLQNDIDLLNPPAXXXXXXXXXXXXVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLTEGCSFRKKGD 336
            MVLQNDIDLLNPPA            VQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQT+LCQPTGGKA+LTEGCSFR+KGD
Sbjct:    1 MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTILCQPTGGKAKLTEGCSFRRKGD 86

[Close]

BLAST of Cicer_arietinum_v1_Contig2273 vs. SwissProt
Match: RS27_HORVU (40S ribosomal protein S27 OS=Hordeum vulgare GN=RPS27 PE=3 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 1.774e-35
Identity = 71/86 (82.56%), Postives = 72/86 (83.72%), Query Frame = 1

Query:   79 MVLQNDIDLLNPPAXXXXXXXXXXXXVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLTEGCSFRKKGD 336
            MVLQNDIDLLNPPA            VQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC  CQTVLCQPTGGKARLTEGCSFR+KGD
Sbjct:    1 MVLQNDIDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCPGCQTVLCQPTGGKARLTEGCSFRRKGD 86

[Close]

BLAST of Cicer_arietinum_v1_Contig2273 vs. SwissProt
Match: RS271_ARATH (40S ribosomal protein S27-1 OS=Arabidopsis thaliana GN=RPS27A PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.562e-34
Identity = 68/84 (80.95%), Postives = 71/84 (84.52%), Query Frame = 1

Query:   79 MVLQNDIDLLNPPAXXXXXXXXXXXXVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLTEGCSFRKK 330
            MVLQNDIDLLNPPA            VQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGNCQT+LC PTGGKA+LTEGCSFRKK
Sbjct:    1 MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGNCQTLLCTPTGGKAKLTEGCSFRKK 84

[Close]

BLAST of Cicer_arietinum_v1_Contig2273 vs. SwissProt
Match: RS273_ARATH (40S ribosomal protein S27-3 OS=Arabidopsis thaliana GN=RPS27D PE=1 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 3.346e-34
Identity = 69/84 (82.14%), Postives = 70/84 (83.33%), Query Frame = 1

Query:   79 MVLQNDIDLLNPPAXXXXXXXXXXXXVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLTEGCSFRKK 330
            MVLQNDIDLL+PP             VQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARL EGCSFRKK
Sbjct:    1 MVLQNDIDLLHPPPELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLQEGCSFRKK 84

[Close]

BLAST of Cicer_arietinum_v1_Contig2273 vs. SwissProt
Match: RS27_CHLRE (40S ribosomal protein S27 OS=Chlamydomonas reinhardtii GN=RPS27 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.244e-30
Identity = 62/86 (72.09%), Postives = 67/86 (77.91%), Query Frame = 1

Query:   79 MVLQNDIDLLNPPAXXXXXXXXXXXXVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLTEGCSFRKKGD 336
            MVL +DIDLLNPPA            VQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CG+C +VLC PTG   RLTEGCSFR+K D
Sbjct:    1 MVLSSDIDLLNPPAELEKTKHKRKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGSCSSVLCTPTGWPRRLTEGCSFRRKSD 86

[Close]

BLAST of Cicer_arietinum_v1_Contig2273 vs. SwissProt
Match: RS27_SCHPO (40S ribosomal protein S27 OS=Schizosaccharomyces pombe GN=rps27 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 9.757e-26
Identity = 53/78 (67.95%), Postives = 59/78 (75.64%), Query Frame = 1

Query:   97 IDLLNPPAXXXXXXXXXXXXVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLTEGCSFRKK 330
            +DLLNP              VQ P SFFMDVKC GCFNITTVFSH+QTVV+CG+C +VLCQPTGGKARL EGCSFR+K
Sbjct:    5 VDLLNPSHESEMRKHKLKQLVQGPRSFFMDVKCPGCFNITTVFSHAQTVVICGSCASVLCQPTGGKARLMEGCSFRRK 82

[Close]

BLAST of Cicer_arietinum_v1_Contig2273 vs. SwissProt
Match: RS27_NEUCR (40S ribosomal protein S27 OS=Neurospora crassa GN=rps-27 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.079e-24
Identity = 52/78 (66.67%), Postives = 57/78 (73.08%), Query Frame = 1

Query:   97 IDLLNPPAXXXXXXXXXXXXVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLTEGCSFRKK 330
            +DLLNP              V +P SFFMDVKC GCF ITTVFSH+QTVV+C  C TVLCQPTGGKARLTEGCSFR+K
Sbjct:    5 VDLLNPSPASEARKHKLKTLVPAPRSFFMDVKCPGCFTITTVFSHAQTVVICQGCTTVLCQPTGGKARLTEGCSFRRK 82

[Close]

BLAST of Cicer_arietinum_v1_Contig2273 vs. SwissProt
Match: RS27_XENLA (40S ribosomal protein S27 OS=Xenopus laevis GN=rps27 PE=3 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 1.409e-24
Identity = 52/77 (67.53%), Postives = 58/77 (75.32%), Query Frame = 1

Query:  100 DLLNPPAXXXXXXXXXXXXVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLTEGCSFRKK 330
            DLL+P              VQSPNS+FMDVKC GC+ ITTVFSH+QTVV+C  C TVLCQPTGGKARLTEGCSFR+K
Sbjct:    6 DLLHPTPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82

[Close]

BLAST of Cicer_arietinum_v1_Contig2273 vs. SwissProt
Match: RS27_RAT (40S ribosomal protein S27 OS=Rattus norvegicus GN=Rps27 PE=2 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 1.409e-24
Identity = 52/77 (67.53%), Postives = 58/77 (75.32%), Query Frame = 1

Query:  100 DLLNPPAXXXXXXXXXXXXVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLTEGCSFRKK 330
            DLL+P              VQSPNS+FMDVKC GC+ ITTVFSH+QTVV+C  C TVLCQPTGGKARLTEGCSFR+K
Sbjct:    6 DLLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82

[Close]

BLAST of Cicer_arietinum_v1_Contig2273 vs. SwissProt
Match: RS27_MOUSE (40S ribosomal protein S27 OS=Mus musculus GN=Rps27 PE=1 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 1.409e-24
Identity = 52/77 (67.53%), Postives = 58/77 (75.32%), Query Frame = 1

Query:  100 DLLNPPAXXXXXXXXXXXXVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLTEGCSFRKK 330
            DLL+P              VQSPNS+FMDVKC GC+ ITTVFSH+QTVV+C  C TVLCQPTGGKARLTEGCSFR+K
Sbjct:    6 DLLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82

[Close]

BLAST of Cicer_arietinum_v1_Contig2273 vs. TrEMBL
Match: B7FN54_MEDTR (Ribosomal protein S27 OS=Medicago truncatula PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.544e-36
Identity = 74/86 (86.05%), Postives = 74/86 (86.05%), Query Frame = 1

Query:   79 MVLQNDIDLLNPPAXXXXXXXXXXXXVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLTEGCSFRKKGD 336
            MVLQNDIDLLNPPA            VQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLTEGCSFRKKGD
Sbjct:    1 MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLTEGCSFRKKGD 86

[Close]

BLAST of Cicer_arietinum_v1_Contig2273 vs. TrEMBL
Match: C6SWV6_SOYBN (Ribosomal protein S27 OS=Glycine max PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 5.667e-36
Identity = 73/86 (84.88%), Postives = 74/86 (86.05%), Query Frame = 1

Query:   79 MVLQNDIDLLNPPAXXXXXXXXXXXXVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLTEGCSFRKKGD 336
            MVLQNDIDLLNPPA            VQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGG+ARLTEGCSFRKKGD
Sbjct:    1 MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRKKGD 86

[Close]

BLAST of Cicer_arietinum_v1_Contig2273 vs. TrEMBL
Match: B7FHA3_MEDTR (Ribosomal protein S27 OS=Medicago truncatula PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 5.667e-36
Identity = 73/86 (84.88%), Postives = 74/86 (86.05%), Query Frame = 1

Query:   79 MVLQNDIDLLNPPAXXXXXXXXXXXXVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLTEGCSFRKKGD 336
            MVLQNDIDLLNPPA            VQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGG+ARLTEGCSFRKKGD
Sbjct:    1 MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRKKGD 86

[Close]

BLAST of Cicer_arietinum_v1_Contig2273 vs. TrEMBL
Match: B9RG16_RICCO (Ribosomal protein S27 OS=Ricinus communis GN=RCOM_1300070 PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.263e-35
Identity = 72/86 (83.72%), Postives = 74/86 (86.05%), Query Frame = 1

Query:   79 MVLQNDIDLLNPPAXXXXXXXXXXXXVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLTEGCSFRKKGD 336
            MVLQNDIDLLNPPA            VQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGG+ARLTEGCSFR+KGD
Sbjct:    1 MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]

BLAST of Cicer_arietinum_v1_Contig2273 vs. TrEMBL
Match: C6SYW6_SOYBN (Ribosomal protein S27 OS=Glycine max PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.649e-35
Identity = 72/86 (83.72%), Postives = 73/86 (84.88%), Query Frame = 1

Query:   79 MVLQNDIDLLNPPAXXXXXXXXXXXXVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLTEGCSFRKKGD 336
            MVLQNDIDLLNPP             VQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGG+ARLTEGCSFRKKGD
Sbjct:    1 MVLQNDIDLLNPPVELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRKKGD 86

[Close]

BLAST of Cicer_arietinum_v1_Contig2273 vs. TrEMBL
Match: D7LS57_ARALY (ARS27A OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_486581 PE=4 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.673e-35
Identity = 70/86 (81.40%), Postives = 74/86 (86.05%), Query Frame = 1

Query:   79 MVLQNDIDLLNPPAXXXXXXXXXXXXVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLTEGCSFRKKGD 336
            MVLQNDIDLLNPPA            VQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGNCQT+LCQPTGGKA+LTEGCSFR+KGD
Sbjct:    1 MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGNCQTILCQPTGGKAKLTEGCSFRRKGD 86

[Close]

BLAST of Cicer_arietinum_v1_Contig2273 vs. TrEMBL
Match: A5APU3_VITVI (Ribosomal protein S27 OS=Vitis vinifera GN=VITISV_040920 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.266e-35
Identity = 71/86 (82.56%), Postives = 73/86 (84.88%), Query Frame = 1

Query:   79 MVLQNDIDLLNPPAXXXXXXXXXXXXVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLTEGCSFRKKGD 336
            MVL NDIDLLNPPA            VQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGG+ARLTEGCSFR+KGD
Sbjct:    1 MVLPNDIDLLNPPAEIEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]

BLAST of Cicer_arietinum_v1_Contig2273 vs. TrEMBL
Match: A1YMY0_BRACM (Ribosomal protein S27 OS=Brassica campestris PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.266e-35
Identity = 72/84 (85.71%), Postives = 72/84 (85.71%), Query Frame = 1

Query:   79 MVLQNDIDLLNPPAXXXXXXXXXXXXVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLTEGCSFRKK 330
            MVLQNDIDLLNPPA            VQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLTEGCSFRKK
Sbjct:    1 MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLTEGCSFRKK 84

[Close]

BLAST of Cicer_arietinum_v1_Contig2273 vs. TrEMBL
Match: Q3HVK9_SOLTU (Ribosomal protein S27 OS=Solanum tuberosum PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 8.183e-35
Identity = 70/86 (81.40%), Postives = 73/86 (84.88%), Query Frame = 1

Query:   79 MVLQNDIDLLNPPAXXXXXXXXXXXXVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLTEGCSFRKKGD 336
            MVL ND+DLLNPPA            VQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGG+ARLTEGCSFR+KGD
Sbjct:    1 MVLPNDVDLLNPPAEQEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]

BLAST of Cicer_arietinum_v1_Contig2273 vs. TrEMBL
Match: D7SVF6_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_68.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00032964001 PE=4 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.069e-34
Identity = 73/96 (76.04%), Postives = 75/96 (78.12%), Query Frame = 1

Query:   49 VSRVLRFHHTMVLQNDIDLLNPPAXXXXXXXXXXXXVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLTEGCSFRKKGD 336
            VS   +    MVL NDIDLLNPPA            VQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQ VLCQPTGG+ARLTEGCSFRKKGD
Sbjct:   65 VSASAKVSTKMVLPNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQLVLCQPTGGRARLTEGCSFRKKGD 160

[Close]

BLAST of Cicer_arietinum_v1_Contig2273 vs. TAIR peptide
Match: AT3G61110.1 (| Symbols: ARS27A, RS27A | ribosomal protein S27 | chr3:22611710-22612632 FORWARD LENGTH=86)

HSP 1 Score: 152.525 bits (384), Expect = 1.328e-37
Identity = 71/86 (82.56%), Postives = 74/86 (86.05%), Query Frame = 1

Query:   79 MVLQNDIDLLNPPAXXXXXXXXXXXXVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLTEGCSFRKKGD 336
            MVLQNDIDLLNPPA            VQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQT+LCQPTGGKA+LTEGCSFR+KGD
Sbjct:    1 MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTILCQPTGGKAKLTEGCSFRRKGD 86

[Close]

BLAST of Cicer_arietinum_v1_Contig2273 vs. TAIR peptide
Match: AT2G45710.1 (| Symbols: | Zinc-binding ribosomal protein family protein | chr2:18831243-18831999 FORWARD LENGTH=84)

HSP 1 Score: 144.821 bits (364), Expect = 2.769e-35
Identity = 68/84 (80.95%), Postives = 71/84 (84.52%), Query Frame = 1

Query:   79 MVLQNDIDLLNPPAXXXXXXXXXXXXVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLTEGCSFRKK 330
            MVLQNDIDLLNPPA            VQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGNCQT+LC PTGGKA+LTEGCSFRKK
Sbjct:    1 MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGNCQTLLCTPTGGKAKLTEGCSFRKK 84

[Close]

BLAST of Cicer_arietinum_v1_Contig2273 vs. TAIR peptide
Match: AT5G47930.1 (| Symbols: | Zinc-binding ribosomal protein family protein | chr5:19406423-19407329 REVERSE LENGTH=84)

HSP 1 Score: 144.436 bits (363), Expect = 3.617e-35
Identity = 69/84 (82.14%), Postives = 70/84 (83.33%), Query Frame = 1

Query:   79 MVLQNDIDLLNPPAXXXXXXXXXXXXVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLTEGCSFRKK 330
            MVLQNDIDLL+PP             VQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARL EGCSFRKK
Sbjct:    1 MVLQNDIDLLHPPPELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLQEGCSFRKK 84

[Close]

BLAST of Cicer_arietinum_v1_Contig2273 vs. TAIR peptide
Match: AT3G61111.1 (| Symbols: | Zinc-binding ribosomal protein family protein | chr3:22613230-22613919 REVERSE LENGTH=86)

HSP 1 Score: 125.561 bits (314), Expect = 1.738e-29
Identity = 60/86 (69.77%), Postives = 64/86 (74.42%), Query Frame = 1

Query:   79 MVLQNDIDLLNPPAXXXXXXXXXXXXVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLTEGCSFRKKGD 336
            MVLQNDIDLLNPPA            V SPNS+FM V+C  C NITT+FSHSQTVVVCG CQ VLCQPTGGKA+LT GCSFRK  D
Sbjct:    1 MVLQNDIDLLNPPAELEKRKHKLKRLVPSPNSYFMLVRCSDCINITTIFSHSQTVVVCGKCQNVLCQPTGGKAKLTVGCSFRKLTD 86

The following BLAST results are available for this feature:

BLAST of Cicer_arietinum_v1_Contig2273 vs. SwissProt
BLAST of Cicer_arietinum_v1_Contig2273 vs. TrEMBL
BLAST of Cicer_arietinum_v1_Contig2273 vs. TAIR peptide

BLAST of Cicer_arietinum_v1_Contig2273 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 10


Match Name	E-value	Identity	Description
RS272_ARATH	1.229e-36	82.56	40S ribosomal protein S27-2 OS=Arabidopsis thalian...	[more]
RS27_HORVU	1.774e-35	82.56	40S ribosomal protein S27 OS=Hordeum vulgare GN=RP...	[more]
RS271_ARATH	2.562e-34	80.95	40S ribosomal protein S27-1 OS=Arabidopsis thalian...	[more]
RS273_ARATH	3.346e-34	82.14	40S ribosomal protein S27-3 OS=Arabidopsis thalian...	[more]
RS27_CHLRE	2.244e-30	72.09	40S ribosomal protein S27 OS=Chlamydomonas reinhar...	[more]
RS27_SCHPO	9.757e-26	67.95	40S ribosomal protein S27 OS=Schizosaccharomyces p...	[more]
RS27_NEUCR	1.079e-24	66.67	40S ribosomal protein S27 OS=Neurospora crassa GN=...	[more]
RS27_XENLA	1.409e-24	67.53	40S ribosomal protein S27 OS=Xenopus laevis GN=rps...	[more]
RS27_RAT	1.409e-24	67.53	40S ribosomal protein S27 OS=Rattus norvegicus GN=...	[more]
RS27_MOUSE	1.409e-24	67.53	40S ribosomal protein S27 OS=Mus musculus GN=Rps27...	[more]

BLAST of Cicer_arietinum_v1_Contig2273 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
B7FN54_MEDTR	2.544e-36	86.05	Ribosomal protein S27 OS=Medicago truncatula PE=3 ...	[more]
C6SWV6_SOYBN	5.667e-36	84.88	Ribosomal protein S27 OS=Glycine max PE=3 SV=1	[more]
B7FHA3_MEDTR	5.667e-36	84.88	Ribosomal protein S27 OS=Medicago truncatula PE=3 ...	[more]
B9RG16_RICCO	1.263e-35	83.72	Ribosomal protein S27 OS=Ricinus communis GN=RCOM_...	[more]
C6SYW6_SOYBN	1.649e-35	83.72	Ribosomal protein S27 OS=Glycine max PE=3 SV=1	[more]
D7LS57_ARALY	3.673e-35	81.40	ARS27A OS=Arabidopsis lyrata subsp. lyrata GN=ARAL...	[more]
A5APU3_VITVI	6.266e-35	82.56	Ribosomal protein S27 OS=Vitis vinifera GN=VITISV_...	[more]
A1YMY0_BRACM	6.266e-35	85.71	Ribosomal protein S27 OS=Brassica campestris PE=3 ...	[more]
Q3HVK9_SOLTU	8.183e-35	81.40	Ribosomal protein S27 OS=Solanum tuberosum PE=3 SV...	[more]
D7SVF6_VITVI	1.069e-34	76.04	Whole genome shotgun sequence of line PN40024, sca...	[more]

BLAST of Cicer_arietinum_v1_Contig2273 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 4


Match Name	E-value	Identity	Description
AT3G61110.1	1.328e-37	82.56	\| Symbols: ARS27A, RS27A \| ribosomal protein S27 \|...	[more]
AT2G45710.1	2.769e-35	80.95	\| Symbols: \| Zinc-binding ribosomal protein famil...	[more]
AT5G47930.1	3.617e-35	82.14	\| Symbols: \| Zinc-binding ribosomal protein famil...	[more]
AT3G61111.1	1.738e-29	69.77	\| Symbols: \| Zinc-binding ribosomal protein famil...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000592	Ribosomal protein S27e	PANTHER	PTHR11594	40S RIBOSOMAL PROTEIN S27	coord: 33..112 score: 5.6
IPR000592	Ribosomal protein S27e	PFAM	PF01667	Ribosomal_S27e	coord: 56..110 score: 5.6
IPR000592	Ribosomal protein S27e	PROSITE	PS01168	RIBOSOMAL_S27E	coord: 64..96 score
IPR011332	Ribosomal protein, zinc-binding domain	SUPERFAMILY	57829	Zn-binding ribosomal proteins	coord: 56..110 score: 5.1
None	No IPR available	GENE3D	2.20.25.100	no description	coord: 56..110 score: 7.8
None	No IPR available	SEG	seg	seg	coord: 41..52 score
None	No IPR available	SEG	seg	seg	coord: 4..16 score

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>Cicer_arietinum_v1_Contig2273 ID=Cicer_arietinum_v1_Contig2273; Name=Cicer_arietinum_v1_Contig2273; organism=Cicer arietinum; type=contig; length=548bp
GCGGGGCTTTCGGATTTTCGCAGTCGCAGCACCCTTCCAACCACAACAGT
TTCTAGGGTTTTGCGATTTCATCACACAATGGTTCTTCAAAACGACATTG
ATCTGTTGAATCCACCAGCCGAACTCGAGAAGAGGAAGCACAAGCTCAAG
CGCCTCGTTCAATCCCCCAATTCATTCTTCATGGATGTCAAATGTCAAGG
TTGCTTCAATATAACTACTGTATTTAGTCACTCCCAAACTGTCGTGGTTT
GCGGTAATTGCCAGACAGTTTTGTGCCAGCCAACTGGTGGCAAAGCAAGG
CTAACTGAGGGATGCTCTTTCAGGAAGAAGGGAGATTAGTGTTGATTTCT
AATAATGAAATTGAAATTTTGTCTTATTGGATAATATTATGTTTTTATAT
ATTAAGTAGTTTGTGTTGTGCTGAATGAAACTGTAATGCATTTGTTCTCT
TCTCGATGAGAAGATACTTAAGTTAATGGTATTTATTTAATTTGGTTGTA
TGACATTATATCATTACCTCTAATTTAAAGTTTAGCAATTTATTTGAC

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular anatomical structure
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **INTERPRO**
Term	Definition
IPR000592	Ribosomal_eS27
IPR011332	Ribosomal_zn-bd

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Cicer_arietinum_v1_Contig2273