Cicer_arietinum_v1_Contig2308

Contig Overview
NameCicer_arietinum_v1_Contig2308
Unique NameCicer_arietinum_v1_Contig2308
Typecontig
OrganismCicer arietinum (chickpea)
Sequence length558
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
GR398288ESTGR398288:1..558 +Cicer arietinum unigene v1n/a
HO067735ESTHO067735:155..551 +Cicer arietinum unigene v1n/a
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Cicer arietinum unigene v1Cicer arietinum unigene v1contig
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
GR398288GR398288Cicer arietinumEST
HO067735HO067735Cicer arietinumEST


Homology
[Close]
BLAST of Cicer_arietinum_v1_Contig2308 vs. SwissProt
Match: E6_GOSHI (Protein E6 OS=Gossypium hirsutum GN=E6 PE=2 SV=1)

HSP 1 Score: 53.9138 bits (128), Expect = 6.277e-7
Identity = 28/65 (43.08%), Postives = 42/65 (64.62%), Query Frame = 1 
Query:   85 EGMSDTRFMESGKYYYNVNNEKDNYNLNGYESERG------SNENEGYSYGKNNQYPNEFDTMEE 261
            +GMSDTR++E+GKYYY+V +E +NY  N +++ RG       NEN   + G+ +Q   EF+  EE
Sbjct:  171 QGMSDTRYLENGKYYYDVKSE-NNYYPNRFDNSRGVASRNEFNENRYNNMGRYHQNQEEFEESEE 234
[Close]
BLAST of Cicer_arietinum_v1_Contig2308 vs. TrEMBL
Match: Q41255_PYRCO (Arabinogalactan-protein OS=Pyrus communis GN=arabinogalactan-protein, AGP PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.403e-14
Identity = 39/71 (54.93%), Postives = 49/71 (69.01%), Query Frame = 1 
Query:   85 EGMSDTRFMESGKYYYNVNNEKDNYNLNGYESE--RGSNENEGYSYGKNNQYPNEFDTMEEYEKQQEAQGY 291
            +GMSDTRF+E+GKYY++V NE  N N NG      RGSN N+   Y  N+   NEF+TMEEY+K Q+ QGY
Sbjct:  222 QGMSDTRFLENGKYYHDVKNEIKNNNFNGNSESDGRGSNRNDVERYYANSHSSNEFNTMEEYDKYQKTQGY 292
[Close]
BLAST of Cicer_arietinum_v1_Contig2308 vs. TrEMBL
Match: B9HGR0_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_562170 PE=4 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.513e-12
Identity = 38/64 (59.38%), Postives = 49/64 (76.56%), Query Frame = 1 
Query:   85 EGMSDTRFMESGKYYYNVNNEKDNYNLNGYESERGSNENEGYSYGKNNQYPNEFDTMEEYEKQQ 276
            +GMSDTR+ME GKYYYN  NE + Y  N YES + S +N+G SYG N++ PNEF+TMEEY+ Q+
Sbjct:  379 QGMSDTRYMEGGKYYYNAKNE-NYYPANKYESGKVSTQNQG-SYG-NDENPNEFNTMEEYKSQE 439
[Close]
BLAST of Cicer_arietinum_v1_Contig2308 vs. TrEMBL
Match: B9MYD8_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_594634 PE=4 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.335e-11
Identity = 39/64 (60.94%), Postives = 48/64 (75.00%), Query Frame = 1 
Query:   85 EGMSDTRFMESGKYYYNVNNEKDNYNLNGYESERGSNENEGYSYGKNNQYPNEFDTMEEYEKQQ 276
            +GMSDTRFME GKYY NV NE + Y  N Y S + S +N+G SYG N++ PNEF+TMEEYE Q+
Sbjct:  302 QGMSDTRFMEGGKYYSNVKNE-NYYPANEYVSGKVSTQNQG-SYG-NDENPNEFNTMEEYESQE 362
[Close]
BLAST of Cicer_arietinum_v1_Contig2308 vs. TrEMBL
Match: Q41725_ZINEL (TED3 OS=Zinnia elegans PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.326e-10
Identity = 35/65 (53.85%), Postives = 45/65 (69.23%), Query Frame = 1 
Query:   85 EGMSDTRFMESGKYYYNVNNEKDNYNLNGYESERGSNENEGYSYGKNNQYPN-EFDTMEEYEKQQ 276
            +GMSDTRF+E+GKY Y+ NN  +N+  + YE E   N   G  Y +NN+ P  EFDTMEEYEKQ+
Sbjct:  255 QGMSDTRFLENGKYSYDANNNGNNHE-SSYEEEVSDN---GEGYYRNNEEPKYEFDTMEEYEKQE 315
[Close]
BLAST of Cicer_arietinum_v1_Contig2308 vs. TrEMBL
Match: B9RVT7_RICCO (Protein E6, putative OS=Ricinus communis GN=RCOM_1172410 PE=4 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 4.748e-9
Identity = 33/65 (50.77%), Postives = 45/65 (69.23%), Query Frame = 1 
Query:   85 EGMSDTRFMESGKYYYNVNNEKDNYNLNGYESERGSNENEGYSYGKNNQYP-NEFDTMEEYEKQQ 276
            +GMSDTRFME GKYYY+ NN+ + Y  NGY S   S +N+  +YG + +   N+F+TM EYE Q+
Sbjct:  217 QGMSDTRFMEGGKYYYDANNDNNYYPPNGYTSREASAQNQ-VNYGNSEKNTNNQFNTM-EYENQE 279
[Close]
BLAST of Cicer_arietinum_v1_Contig2308 vs. TrEMBL
Match: A9PDV3_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_671016 PE=2 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 3.078e-8
Identity = 31/80 (38.75%), Postives = 49/80 (61.25%), Query Frame = 1 
Query:   85 EGMSDTRFMESGKYYYNVNNEKDNYNLNGYESERGSNEN-EGYSYGKNNQYPNEFD---TMEEYEKQ---QEAQGYTYTP 303
            +GMSDTR++E GKYYY++  E  NYN N Y+ +  +N N  GY    NN   ++F+   +M++Y+ Q   +E++   Y P
Sbjct:  183 QGMSDTRYLEKGKYYYDLKGENSNYNPNQYQQDSRNNYNTRGYYSNNNNNENSKFEYNNSMQKYDNQDDFEESKEEQYVP 262
[Close]
BLAST of Cicer_arietinum_v1_Contig2308 vs. TrEMBL
Match: A5AJH6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_005068 PE=4 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 3.078e-8
Identity = 35/75 (46.67%), Postives = 48/75 (64.00%), Query Frame = 1 
Query:   79 KGEGMSDTRFMESGKYYYNVNNEK---DNYNLNGYESERGSNENEGYSYGKNNQYPN--EFD-TMEEYEKQQEAQ 285
            K +GMSDTRF+E+G+YYY++N+EK   + Y  +  E  R    N GY YG NN   N  EFD +ME Y+ Q++ Q
Sbjct:  172 KQQGMSDTRFLENGRYYYDLNSEKNYRNEYENSRTEYSRNEYNNRGY-YGNNNNNENSYEFDNSMEGYQNQEQYQ 245
[Close]
BLAST of Cicer_arietinum_v1_Contig2308 vs. TrEMBL
Match: D7KD83_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_887539 PE=4 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 4.020e-8
Identity = 33/75 (44.00%), Postives = 42/75 (56.00%), Query Frame = 1 
Query:   85 EGMSDTRFMESGKYYYNVN--NEKDNYNLNGYESERGSNENEGYSYGKNNQYPNEFDTMEEYEKQQEAQGYTYTP 303
            +GMSDTRFME+GKY+Y+    N ++     GYE+ RG            N +PNEF+TMEEY K  E     Y P
Sbjct:  159 QGMSDTRFMENGKYFYDTRGRNSENTPASRGYENARG------------NDHPNEFETMEEYYKSLEGSQEEYEP 221
[Close]
BLAST of Cicer_arietinum_v1_Contig2308 vs. TrEMBL
Match: A9P9P9_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 4.020e-8
Identity = 32/90 (35.56%), Postives = 46/90 (51.11%), Query Frame = 1 
Query:   85 EGMSDTRFMESGKYYYNVNNE-------------KDNYNLNGYESER----------GSNENEGYSYGKNNQYPNEFDTMEEYEKQQEAQ 285
            +GMSDTR++E GKYYY+VNNE             ++NYN  GY +             +N NE   Y  NN    ++D  +++E+ QE Q
Sbjct:  193 QGMSDTRYLEHGKYYYDVNNENSNYYPNQYQQNSRNNYNTRGYYNNNNNNYNTRGYYNNNNNENSKYEYNNNSMQKYDNQDDFEESQEEQ 282
[Close]
BLAST of Cicer_arietinum_v1_Contig2308 vs. TrEMBL
Match: B9H2R1_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_555758 PE=4 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 6.857e-8
Identity = 30/83 (36.14%), Postives = 43/83 (51.81%), Query Frame = 1 
Query:   85 EGMSDTRFMESGKYYYNVNNEKDNYNLNGYESERGSNEN----------------EGYSYGKNNQYPNEFDTMEEYEKQQEAQ 285
            +GMSDTR++E GKYYY++NNE  NY  N Y+    +N N                E   Y  NN    ++D  +++E+ QE Q
Sbjct:  194 QGMSDTRYLEHGKYYYDLNNENSNYYPNQYQQNSRNNYNTRGYYNNNNNIQTITTENSKYEYNNNSMQKYDNQDDFEESQEEQ 276
[Close]
BLAST of Cicer_arietinum_v1_Contig2308 vs. TAIR peptide
Match: AT1G03820.1 (| Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 1345 Blast hits to 1122 proteins in 102 species: Archae - 2; Bacteria - 28; Metazoa - 28; Fungi - 30; Plants - 109; Viruses - 0; Other Eukaryotes - 1148 (source: NCBI BLink). | chr1:960008-960676 REVERSE LENGTH=222)

HSP 1 Score: 58.9214 bits (141), Expect = 2.089e-9
Identity = 38/102 (37.25%), Postives = 46/102 (45.10%), Query Frame = 1 
Query:    1 NYNNEVYTKTXXXXXXXXXXXXXXXRKGEGMSDTRFMESGKYYYNVNNEK-DNYNLNGYESERGSNENEGYSYGKNNQYPNEFDTMEEYEKQQEAQGYTYTP 303
            N NN  YT T                K +GMSDTR ME+GKY+Y+      +N    GYE+ RG            N + NEF+TMEEY K  E     Y P
Sbjct:  134 NNNNNGYTYTTNNYNDNGRGYGNEEEK-QGMSDTRVMENGKYFYDTRGRNSENTPSRGYENARG------------NDHTNEFETMEEYYKSLEGSQEEYEP 222
[Close]
BLAST of Cicer_arietinum_v1_Contig2308 vs. TAIR peptide
Match: AT2G33850.1 (| Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28400.1); Has 3053 Blast hits to 2119 proteins in 133 species: Archae - 6; Bacteria - 52; Metazoa - 135; Fungi - 96; Plants - 73; Viruses - 2; Other Eukaryotes - 2689 (source: NCBI BLink). | chr2:14321221-14322024 REVERSE LENGTH=267)

HSP 1 Score: 50.0618 bits (118), Expect = 9.705e-7
Identity = 25/73 (34.25%), Postives = 47/73 (64.38%), Query Frame = 1 
Query:   85 EGMSDTRFMESGKYYYNVNNEKDNYNLNGYESERGSNENEGYSYGKNNQYPNEFDTMEEYEKQQEAQGYTYTP 303
            +GMSDTR+M +GKYYY++++++++     Y++   + +  GY+  K+N + N +D+ ++ E   E QG   TP
Sbjct:  198 QGMSDTRYMANGKYYYDLDDDRNHGRF--YQNHYYNYKPTGYNEKKSN-FKNPYDSNQQSEMLGEEQGDQITP 267
The following BLAST results are available for this feature:
BLAST of Cicer_arietinum_v1_Contig2308 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 1
Match NameE-valueIdentityDescription
E6_GOSHI6.277e-743.08Protein E6 OS=Gossypium hirsutum GN=E6 PE=2 SV=1[more]
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BLAST of Cicer_arietinum_v1_Contig2308 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
Q41255_PYRCO6.403e-1454.93Arabinogalactan-protein OS=Pyrus communis GN=arabi... [more]
B9HGR0_POPTR3.513e-1259.38Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
B9MYD8_POPTR1.335e-1160.94Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
Q41725_ZINEL7.326e-1053.85TED3 OS=Zinnia elegans PE=2 SV=1[more]
B9RVT7_RICCO4.748e-950.77Protein E6, putative OS=Ricinus communis GN=RCOM_1... [more]
A9PDV3_POPTR3.078e-838.75Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
A5AJH6_VITVI3.078e-846.67Putative uncharacterized protein OS=Vitis vinifera... [more]
D7KD83_ARALY4.020e-844.00Putative uncharacterized protein OS=Arabidopsis ly... [more]
A9P9P9_POPTR4.020e-835.56Putative uncharacterized protein OS=Populus tricho... [more]
B9H2R1_POPTR6.857e-836.14Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
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BLAST of Cicer_arietinum_v1_Contig2308 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 2
Match NameE-valueIdentityDescription
AT1G03820.12.089e-937.25| Symbols: | unknown protein; FUNCTIONS IN: molec... [more]
AT2G33850.19.705e-734.25| Symbols: | unknown protein; FUNCTIONS IN: molec... [more]
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InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 11..25
score
NoneNo IPR availableSEGsegsegcoord: 46..55
score
NoneNo IPR availableSEGsegsegcoord: 1..18
score: NAcoord: 35..59
score

Sequences
The following sequences are available for this feature:

contig sequence

>Cicer_arietinum_v1_Contig2308 ID=Cicer_arietinum_v1_Contig2308; Name=Cicer_arietinum_v1_Contig2308; organism=Cicer arietinum; type=contig; length=558bp
AACTACAACAATGAAGTGTACACAAAAACCTACAACAGTGAAGAGTACAA
CAACAATTATGTGAATGGTTACGAGAGGAAAGGAGAAGGAATGAGTGATA
CAAGGTTTATGGAAAGTGGAAAGTACTATTACAATGTAAATAATGAAAAA
GACAATTATAACCTCAATGGGTATGAATCAGAGAGAGGAAGCAATGAAAA
TGAAGGTTATAGCTATGGAAAAAATAATCAGTATCCAAATGAGTTTGATA
CTATGGAAGAGTATGAGAAGCAGCAAGAAGCACAAGGTTACACATACACA
CCATGATTAATTAAGTGTTGTTTTTAATTATATACATTTGGTTAAACAAT
TAGAGTGAGAGACATATAATGCACACACACATTAGAATGAAAAATGGTAC
GCAATGAGATTATTGTAATGCTTTATTTTTCAAGTTTTATGCATCCTTGA
TCTTGCATAATATTCACTTATTTTTATTTTTACTTTCATGTGTAATGTGA
GGTTTTATCTTCTTCGGAAACTATTTAACATTTTGTTAATGTAACAAGCT
GAAAGAAC
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