Cicer_arietinum_v1_Contig2337

Contig Overview


Name	Cicer_arietinum_v1_Contig2337
Unique Name	Cicer_arietinum_v1_Contig2337
Type	contig
Organism	Cicer arietinum (chickpea)
Sequence length	346

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
GR395724	EST	GR395724:1..312 +	Cicer arietinum unigene v1	n/a
GR420467	EST	GR420467:194..346 -	Cicer arietinum unigene v1	n/a

Unigenes

This contig is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	contig

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide	2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Relationships

The following EST feature(s) are a part of this contig:


Feature Name	Unique Name	Species	Type
GR395724	GR395724	Cicer arietinum	EST
GR420467	GR420467	Cicer arietinum	EST

Homology

[Close]

BLAST of Cicer_arietinum_v1_Contig2337 vs. SwissProt
Match: RL321_ARATH (60S ribosomal protein L32-1 OS=Arabidopsis thaliana GN=RPL32A PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 2.029e-16
Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 1

Query:    7 MHNRTYCAEIAHNISTSKRKEIVERAAQLDVVVTNKTARLRSQEDE 144
            MHNRTYCAEIAHN+ST KRK IVERA+QLDVVVTN+ ARLRSQEDE
Sbjct:   88 MHNRTYCAEIAHNVSTKKRKAIVERASQLDVVVTNRLARLRSQEDE 133

[Close]

BLAST of Cicer_arietinum_v1_Contig2337 vs. SwissProt
Match: RL322_ARATH (60S ribosomal protein L32-2 OS=Arabidopsis thaliana GN=RPL32B PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.904e-16
Identity = 40/46 (86.96%), Postives = 42/46 (91.30%), Query Frame = 1

Query:    7 MHNRTYCAEIAHNISTSKRKEIVERAAQLDVVVTNKTARLRSQEDE 144
            MHNRTYCAEIAHNIST KRK IVERA+QLDVVV+NK  RLRSQEDE
Sbjct:   88 MHNRTYCAEIAHNISTKKRKAIVERASQLDVVVSNKLGRLRSQEDE 133

[Close]

BLAST of Cicer_arietinum_v1_Contig2337 vs. SwissProt
Match: RL32_MAIZE (60S ribosomal protein L32 (Fragment) OS=Zea mays GN=RPL32 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.960e-12
Identity = 34/42 (80.95%), Postives = 36/42 (85.71%), Query Frame = 1

Query:   19 TYCAEIAHNISTSKRKEIVERAAQLDVVVTNKTARLRSQEDE 144
            TYCAEIAHN+ST KRKEIVERAAQLD+VV  K AR  SQEDE
Sbjct:    1 TYCAEIAHNVSTKKRKEIVERAAQLDIVVPTKLARAPSQEDE 42

[Close]

BLAST of Cicer_arietinum_v1_Contig2337 vs. SwissProt
Match: RL32_SPOFR (60S ribosomal protein L32 OS=Spodoptera frugiperda GN=RpL32 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.378e-11
Identity = 32/46 (69.57%), Postives = 36/46 (78.26%), Query Frame = 1

Query:    7 MHNRTYCAEIAHNISTSKRKEIVERAAQLDVVVTNKTARLRSQEDE 144
            M NR YCAEIAH +S+ KRK IVERA QL + VTN  ARLRSQE+E
Sbjct:   89 MQNRKYCAEIAHGVSSKKRKTIVERAQQLSIRVTNSAARLRSQENE 134

[Close]

BLAST of Cicer_arietinum_v1_Contig2337 vs. SwissProt
Match: RL32_DROAC (60S ribosomal protein L32 OS=Drosophila acanthoptera GN=RpL32 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.378e-11
Identity = 32/46 (69.57%), Postives = 37/46 (80.43%), Query Frame = 1

Query:    7 MHNRTYCAEIAHNISTSKRKEIVERAAQLDVVVTNKTARLRSQEDE 144
            M NR YC EIAH +S++KRKEIVERA QL V +TN  ARLRSQE+E
Sbjct:   89 MQNREYCGEIAHGVSSNKRKEIVERAKQLSVRLTNPNARLRSQENE 134

[Close]

BLAST of Cicer_arietinum_v1_Contig2337 vs. SwissProt
Match: RL32_ICTPU (60S ribosomal protein L32 OS=Ictalurus punctatus GN=rpl32 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.469e-11
Identity = 31/46 (67.39%), Postives = 38/46 (82.61%), Query Frame = 1

Query:    7 MHNRTYCAEIAHNISTSKRKEIVERAAQLDVVVTNKTARLRSQEDE 144
            M N++YCAEIAHN+S+  RK IVERAAQL + VTN  ARLRS+E+E
Sbjct:   90 MSNKSYCAEIAHNVSSKNRKVIVERAAQLAIKVTNPNARLRSEENE 135

[Close]

BLAST of Cicer_arietinum_v1_Contig2337 vs. SwissProt
Match: RL32_RAT (60S ribosomal protein L32 OS=Rattus norvegicus GN=Rpl32 PE=1 SV=2)

HSP 1 Score: 65.0846 bits (157), Expect = 1.274e-10
Identity = 31/46 (67.39%), Postives = 38/46 (82.61%), Query Frame = 1

Query:    7 MHNRTYCAEIAHNISTSKRKEIVERAAQLDVVVTNKTARLRSQEDE 144
            M N++YCAEIAHN+S+  RK IVERAAQL + VTN  ARLRS+E+E
Sbjct:   90 MCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135

[Close]

BLAST of Cicer_arietinum_v1_Contig2337 vs. SwissProt
Match: RL32_PIG (60S ribosomal protein L32 OS=Sus scrofa GN=RPL32 PE=2 SV=3)

HSP 1 Score: 65.0846 bits (157), Expect = 1.274e-10
Identity = 31/46 (67.39%), Postives = 38/46 (82.61%), Query Frame = 1

Query:    7 MHNRTYCAEIAHNISTSKRKEIVERAAQLDVVVTNKTARLRSQEDE 144
            M N++YCAEIAHN+S+  RK IVERAAQL + VTN  ARLRS+E+E
Sbjct:   90 MCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135

[Close]

BLAST of Cicer_arietinum_v1_Contig2337 vs. SwissProt
Match: RL32_MOUSE (60S ribosomal protein L32 OS=Mus musculus GN=Rpl32 PE=2 SV=2)

HSP 1 Score: 65.0846 bits (157), Expect = 1.274e-10
Identity = 31/46 (67.39%), Postives = 38/46 (82.61%), Query Frame = 1

Query:    7 MHNRTYCAEIAHNISTSKRKEIVERAAQLDVVVTNKTARLRSQEDE 144
            M N++YCAEIAHN+S+  RK IVERAAQL + VTN  ARLRS+E+E
Sbjct:   90 MCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135

[Close]

BLAST of Cicer_arietinum_v1_Contig2337 vs. SwissProt
Match: RL32_MACFA (60S ribosomal protein L32 OS=Macaca fascicularis GN=RPL32 PE=2 SV=3)

HSP 1 Score: 65.0846 bits (157), Expect = 1.274e-10
Identity = 31/46 (67.39%), Postives = 38/46 (82.61%), Query Frame = 1

Query:    7 MHNRTYCAEIAHNISTSKRKEIVERAAQLDVVVTNKTARLRSQEDE 144
            M N++YCAEIAHN+S+  RK IVERAAQL + VTN  ARLRS+E+E
Sbjct:   90 MCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135

[Close]

BLAST of Cicer_arietinum_v1_Contig2337 vs. TrEMBL
Match: B7FN56_MEDTR (Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.818e-17
Identity = 43/46 (93.48%), Postives = 46/46 (100.00%), Query Frame = 1

Query:    7 MHNRTYCAEIAHNISTSKRKEIVERAAQLDVVVTNKTARLRSQEDE 144
            MHNRTYCAEIAHN+STSKRK+IVERAAQLDVV+TNKTARLRSQEDE
Sbjct:   88 MHNRTYCAEIAHNVSTSKRKDIVERAAQLDVVLTNKTARLRSQEDE 133

[Close]

BLAST of Cicer_arietinum_v1_Contig2337 vs. TrEMBL
Match: C6TC86_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.598e-17
Identity = 44/46 (95.65%), Postives = 45/46 (97.83%), Query Frame = 1

Query:    7 MHNRTYCAEIAHNISTSKRKEIVERAAQLDVVVTNKTARLRSQEDE 144
            MHNRTYCAEIAHNIST KRK+IVERAAQLDVVVTNKTARLRSQEDE
Sbjct:   88 MHNRTYCAEIAHNISTRKRKDIVERAAQLDVVVTNKTARLRSQEDE 133

[Close]

BLAST of Cicer_arietinum_v1_Contig2337 vs. TrEMBL
Match: C6SYH6_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.598e-17
Identity = 44/46 (95.65%), Postives = 45/46 (97.83%), Query Frame = 1

Query:    7 MHNRTYCAEIAHNISTSKRKEIVERAAQLDVVVTNKTARLRSQEDE 144
            MHNRTYCAEIAHNIST KRK+IVERAAQLDVVVTNKTARLRSQEDE
Sbjct:   88 MHNRTYCAEIAHNISTRKRKDIVERAAQLDVVVTNKTARLRSQEDE 133

[Close]

BLAST of Cicer_arietinum_v1_Contig2337 vs. TrEMBL
Match: C6T5E0_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.693e-16
Identity = 43/46 (93.48%), Postives = 45/46 (97.83%), Query Frame = 1

Query:    7 MHNRTYCAEIAHNISTSKRKEIVERAAQLDVVVTNKTARLRSQEDE 144
            MHNRTYCAEIAHNIST KRK+IVERAAQLDVVVTNKTARLR+QEDE
Sbjct:   88 MHNRTYCAEIAHNISTRKRKDIVERAAQLDVVVTNKTARLRTQEDE 133

[Close]

BLAST of Cicer_arietinum_v1_Contig2337 vs. TrEMBL
Match: Q84QW3_ORYSJ (Putative ribosomal protein L32 OS=Oryza sativa subsp. japonica GN=OJ1191_A10.105 PE=4 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.211e-16
Identity = 42/46 (91.30%), Postives = 44/46 (95.65%), Query Frame = 1

Query:    7 MHNRTYCAEIAHNISTSKRKEIVERAAQLDVVVTNKTARLRSQEDE 144
            MHNRTYCAEIAHN+ST KRKEIVERAAQLD+VVTNK ARLRSQEDE
Sbjct:   88 MHNRTYCAEIAHNVSTKKRKEIVERAAQLDIVVTNKLARLRSQEDE 133

[Close]

BLAST of Cicer_arietinum_v1_Contig2337 vs. TrEMBL
Match: Q6RW44_CAPAN (Ly200 protein OS=Capsicum annuum PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.211e-16
Identity = 43/46 (93.48%), Postives = 44/46 (95.65%), Query Frame = 1

Query:    7 MHNRTYCAEIAHNISTSKRKEIVERAAQLDVVVTNKTARLRSQEDE 144
            MHNRTYCAEIAHN+ST KRKEIVERAAQLDVVVTNK ARLRSQEDE
Sbjct:   88 MHNRTYCAEIAHNVSTRKRKEIVERAAQLDVVVTNKLARLRSQEDE 133

[Close]

BLAST of Cicer_arietinum_v1_Contig2337 vs. TrEMBL
Match: Q45NI6_MEDSA (Ribosomal protein L32 OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.211e-16
Identity = 43/46 (93.48%), Postives = 44/46 (95.65%), Query Frame = 1

Query:    7 MHNRTYCAEIAHNISTSKRKEIVERAAQLDVVVTNKTARLRSQEDE 144
            MHNRTYCAEIAHN+ST KRKEIVERAAQLDVVVTNK ARLRSQEDE
Sbjct:   88 MHNRTYCAEIAHNVSTRKRKEIVERAAQLDVVVTNKLARLRSQEDE 133

[Close]

BLAST of Cicer_arietinum_v1_Contig2337 vs. TrEMBL
Match: Q0J4B8_ORYSJ (Os08g0524600 protein (Fragment) OS=Oryza sativa subsp. japonica GN=Os08g0524600 PE=4 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.211e-16
Identity = 42/46 (91.30%), Postives = 44/46 (95.65%), Query Frame = 1

Query:    7 MHNRTYCAEIAHNISTSKRKEIVERAAQLDVVVTNKTARLRSQEDE 144
            MHNRTYCAEIAHN+ST KRKEIVERAAQLD+VVTNK ARLRSQEDE
Sbjct:  106 MHNRTYCAEIAHNVSTKKRKEIVERAAQLDIVVTNKLARLRSQEDE 151

[Close]

BLAST of Cicer_arietinum_v1_Contig2337 vs. TrEMBL
Match: Q0J0Q8_ORYSJ (Os09g0502000 protein OS=Oryza sativa subsp. japonica GN=Os09g0502000 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.211e-16
Identity = 42/46 (91.30%), Postives = 44/46 (95.65%), Query Frame = 1

Query:    7 MHNRTYCAEIAHNISTSKRKEIVERAAQLDVVVTNKTARLRSQEDE 144
            MHNRTYCAEIAHN+ST KRKEIVERAAQLD+VVTNK ARLRSQEDE
Sbjct:   88 MHNRTYCAEIAHNVSTKKRKEIVERAAQLDIVVTNKLARLRSQEDE 133

[Close]

BLAST of Cicer_arietinum_v1_Contig2337 vs. TrEMBL
Match: C6SZ81_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.211e-16
Identity = 42/46 (91.30%), Postives = 45/46 (97.83%), Query Frame = 1

Query:    7 MHNRTYCAEIAHNISTSKRKEIVERAAQLDVVVTNKTARLRSQEDE 144
            MHNRTYCAEIAHN+ST KRK+IVERAAQLDVV+TNKTARLRSQEDE
Sbjct:   88 MHNRTYCAEIAHNVSTRKRKDIVERAAQLDVVLTNKTARLRSQEDE 133

[Close]

BLAST of Cicer_arietinum_v1_Contig2337 vs. TAIR peptide
Match: AT4G18100.1 (| Symbols: | Ribosomal protein L32e | chr4:10035715-10036475 REVERSE LENGTH=133)

HSP 1 Score: 84.3445 bits (207), Expect = 1.614e-17
Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 1

Query:    7 MHNRTYCAEIAHNISTSKRKEIVERAAQLDVVVTNKTARLRSQEDE 144
            MHNRTYCAEIAHN+ST KRK IVERA+QLDVVVTN+ ARLRSQEDE
Sbjct:   88 MHNRTYCAEIAHNVSTKKRKAIVERASQLDVVVTNRLARLRSQEDE 133

[Close]

BLAST of Cicer_arietinum_v1_Contig2337 vs. TAIR peptide
Match: AT5G46430.2 (| Symbols: | Ribosomal protein L32e | chr5:18833429-18834409 FORWARD LENGTH=133)

HSP 1 Score: 82.8037 bits (203), Expect = 4.697e-17
Identity = 40/46 (86.96%), Postives = 42/46 (91.30%), Query Frame = 1

Query:    7 MHNRTYCAEIAHNISTSKRKEIVERAAQLDVVVTNKTARLRSQEDE 144
            MHNRTYCAEIAHNIST KRK IVERA+QLDVVV+NK  RLRSQEDE
Sbjct:   88 MHNRTYCAEIAHNISTKKRKAIVERASQLDVVVSNKLGRLRSQEDE 133

[Close]

BLAST of Cicer_arietinum_v1_Contig2337 vs. TAIR peptide
Match: AT5G46430.1 (| Symbols: | Ribosomal protein L32e | chr5:18833429-18834409 FORWARD LENGTH=133)

HSP 1 Score: 82.8037 bits (203), Expect = 4.697e-17
Identity = 40/46 (86.96%), Postives = 42/46 (91.30%), Query Frame = 1

Query:    7 MHNRTYCAEIAHNISTSKRKEIVERAAQLDVVVTNKTARLRSQEDE 144
            MHNRTYCAEIAHNIST KRK IVERA+QLDVVV+NK  RLRSQEDE
Sbjct:   88 MHNRTYCAEIAHNISTKKRKAIVERASQLDVVVSNKLGRLRSQEDE 133

The following BLAST results are available for this feature:

BLAST of Cicer_arietinum_v1_Contig2337 vs. SwissProt
BLAST of Cicer_arietinum_v1_Contig2337 vs. TrEMBL
BLAST of Cicer_arietinum_v1_Contig2337 vs. TAIR peptide

BLAST of Cicer_arietinum_v1_Contig2337 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 10


Match Name	E-value	Identity	Description
RL321_ARATH	2.029e-16	86.96	60S ribosomal protein L32-1 OS=Arabidopsis thalian...	[more]
RL322_ARATH	5.904e-16	86.96	60S ribosomal protein L32-2 OS=Arabidopsis thalian...	[more]
RL32_MAIZE	3.960e-12	80.95	60S ribosomal protein L32 (Fragment) OS=Zea mays G...	[more]
RL32_SPOFR	4.378e-11	69.57	60S ribosomal protein L32 OS=Spodoptera frugiperda...	[more]
RL32_DROAC	4.378e-11	69.57	60S ribosomal protein L32 OS=Drosophila acanthopte...	[more]
RL32_ICTPU	7.469e-11	67.39	60S ribosomal protein L32 OS=Ictalurus punctatus G...	[more]
RL32_RAT	1.274e-10	67.39	60S ribosomal protein L32 OS=Rattus norvegicus GN=...	[more]
RL32_PIG	1.274e-10	67.39	60S ribosomal protein L32 OS=Sus scrofa GN=RPL32 P...	[more]
RL32_MOUSE	1.274e-10	67.39	60S ribosomal protein L32 OS=Mus musculus GN=Rpl32...	[more]
RL32_MACFA	1.274e-10	67.39	60S ribosomal protein L32 OS=Macaca fascicularis G...	[more]

BLAST of Cicer_arietinum_v1_Contig2337 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
B7FN56_MEDTR	5.818e-17	93.48	Putative uncharacterized protein OS=Medicago trunc...	[more]
C6TC86_SOYBN	7.598e-17	95.65	Putative uncharacterized protein OS=Glycine max PE...	[more]
C6SYH6_SOYBN	7.598e-17	95.65	Putative uncharacterized protein OS=Glycine max PE...	[more]
C6T5E0_SOYBN	1.693e-16	93.48	Putative uncharacterized protein OS=Glycine max PE...	[more]
Q84QW3_ORYSJ	2.211e-16	91.30	Putative ribosomal protein L32 OS=Oryza sativa sub...	[more]
Q6RW44_CAPAN	2.211e-16	93.48	Ly200 protein OS=Capsicum annuum PE=2 SV=1	[more]
Q45NI6_MEDSA	2.211e-16	93.48	Ribosomal protein L32 OS=Medicago sativa PE=2 SV=1	[more]
Q0J4B8_ORYSJ	2.211e-16	91.30	Os08g0524600 protein (Fragment) OS=Oryza sativa su...	[more]
Q0J0Q8_ORYSJ	2.211e-16	91.30	Os09g0502000 protein OS=Oryza sativa subsp. japoni...	[more]
C6SZ81_SOYBN	2.211e-16	91.30	Putative uncharacterized protein OS=Glycine max PE...	[more]

BLAST of Cicer_arietinum_v1_Contig2337 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 3


Match Name	E-value	Identity	Description
AT4G18100.1	1.614e-17	86.96	\| Symbols: \| Ribosomal protein L32e \| chr4:100357...	[more]
AT5G46430.2	4.697e-17	86.96	\| Symbols: \| Ribosomal protein L32e \| chr5:188334...	[more]
AT5G46430.1	4.697e-17	86.96	\| Symbols: \| Ribosomal protein L32e \| chr5:188334...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 25..37 score

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>Cicer_arietinum_v1_Contig2337 ID=Cicer_arietinum_v1_Contig2337; Name=Cicer_arietinum_v1_Contig2337; organism=Cicer arietinum; type=contig; length=346bp
TCGGGGATGCACAACAGGACCTACTGTGCTGAGATTGCTCACAATATATC
CACAAGTAAGAGAAAGGAAATAGTTGAGAGAGCTGCACAACTTGATGTTG
TTGTAACAAACAAAACTGCCAGATTAAGAAGTCAGGAGGACGAATAGTTT
GGATATTTTGGATTTTGTAATGAATTGGCATTTACCGTATCATTTTTTTT
GCCTTAAATACAATATAATTAACTTGTTATGTTGTTGAGTTTTTTTGTTT
TGTTTTGTTTTTTTATGACTCCTATACATATTTTAACAATTTTTAAAATG
TTGGGCAAATATTCTGTTTTTATTTTTTTGACATACTCAAAAAAAA

Search form

Cicer_arietinum_v1_Contig2337