Cicer_arietinum_v1_Contig2420

Contig Overview


Name	Cicer_arietinum_v1_Contig2420
Unique Name	Cicer_arietinum_v1_Contig2420
Type	contig
Organism	Cicer arietinum (chickpea)
Sequence length	621

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
GR915919	EST	GR915919:1..339 +
GR404994	EST	GR404994:1..327 +
GR397758	EST	GR397758:213..419 -
GR912884	EST	GR912884:1..411 +
FE670577	EST	FE670577:36..368 +
GR916968	EST	GR916968:41..411 -
GR397976	EST	GR397976:1..506 -
GR393106	EST	GR393106:1..503 +
HO067891	EST	HO067891:149..505 +
GR393379	EST	GR393379:1..591 +
GR917539	EST	GR917539:360..590 +
GR407941	EST	GR407941:89..616 -
GR392226	EST	GR392226:180..616 +
GR917552	EST	GR917552:363..621 -

Unigenes

This contig is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	contig

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
KEGG analysis for Cicer arietinum unigene v1	2011-01-05
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide	2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Relationships

The following EST feature(s) are a part of this contig:


Feature Name	Unique Name	Species	Type
GR915919	GR915919	Cicer arietinum	EST
GR404994	GR404994	Cicer arietinum	EST
GR397758	GR397758	Cicer arietinum	EST
GR912884	GR912884	Cicer arietinum	EST
FE670577	FE670577	Cicer arietinum	EST
GR916968	GR916968	Cicer arietinum	EST
GR397976	GR397976	Cicer arietinum	EST
GR393106	GR393106	Cicer arietinum	EST
HO067891	HO067891	Cicer arietinum	EST
GR393379	GR393379	Cicer arietinum	EST
GR917539	GR917539	Cicer arietinum	EST
GR407941	GR407941	Cicer arietinum	EST
GR392226	GR392226	Cicer arietinum	EST
GR917552	GR917552	Cicer arietinum	EST

Homology

[Close]

BLAST of Cicer_arietinum_v1_Contig2420 vs. SwissProt
Match: RS25_SOLLC (40S ribosomal protein S25 OS=Solanum lycopersicum GN=RPS25 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.116e-29
Identity = 64/72 (88.89%), Postives = 71/72 (98.61%), Query Frame = 1

Query:  160 VNNMVLFDQATYDKLISEAPKYKLITPSVLSDRLRVNGSLARKAIRDLMARGLIRMVSSHSSQQIYTRATNT 375
            VNNMVLFD++TYDKL+SEAPKYKLITPSVLSDRLR++GSLARKAIRDLMARG IRMVS+H+SQQIYTRATNT
Sbjct:   37 VNNMVLFDKSTYDKLLSEAPKYKLITPSVLSDRLRISGSLARKAIRDLMARGSIRMVSAHASQQIYTRATNT 108

[Close]

BLAST of Cicer_arietinum_v1_Contig2420 vs. SwissProt
Match: RS252_ARATH (40S ribosomal protein S25-2 OS=Arabidopsis thaliana GN=RPS25B PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.486e-29
Identity = 61/72 (84.72%), Postives = 71/72 (98.61%), Query Frame = 1

Query:  160 VNNMVLFDQATYDKLISEAPKYKLITPSVLSDRLRVNGSLARKAIRDLMARGLIRMVSSHSSQQIYTRATNT 375
            VNNMVLFDQ TYDKL++EAPK+KLITPS+LSDR+R+NGSLAR+AIR+LMA+GLIRMVS+HSSQQIYTRATNT
Sbjct:   37 VNNMVLFDQGTYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAKGLIRMVSAHSSQQIYTRATNT 108

[Close]

BLAST of Cicer_arietinum_v1_Contig2420 vs. SwissProt
Match: RS254_ARATH (40S ribosomal protein S25-4 OS=Arabidopsis thaliana GN=RPS25E PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.241e-29
Identity = 60/72 (83.33%), Postives = 72/72 (100.00%), Query Frame = 1

Query:  160 VNNMVLFDQATYDKLISEAPKYKLITPSVLSDRLRVNGSLARKAIRDLMARGLIRMVSSHSSQQIYTRATNT 375
            VNNMVLFDQATYDKL++EAPK+KLITPS+LSDR+R+NGSLAR+AIR+LMA+G+IRMV++HSSQQIYTRATNT
Sbjct:   37 VNNMVLFDQATYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAKGVIRMVAAHSSQQIYTRATNT 108

[Close]

BLAST of Cicer_arietinum_v1_Contig2420 vs. SwissProt
Match: RS253_ARATH (40S ribosomal protein S25-3 OS=Arabidopsis thaliana GN=RPS25D PE=3 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.234e-28
Identity = 61/71 (85.92%), Postives = 70/71 (98.59%), Query Frame = 1

Query:  160 VNNMVLFDQATYDKLISEAPKYKLITPSVLSDRLRVNGSLARKAIRDLMARGLIRMVSSHSSQQIYTRATN 372
            VNNMVLFDQATYDKL+SEAPK+KLITPS+LSDRLR+NGSLAR+AIR+LMA+G IRMVS+HSSQQIYTRAT+
Sbjct:   37 VNNMVLFDQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRELMAKGTIRMVSAHSSQQIYTRATH 107

[Close]

BLAST of Cicer_arietinum_v1_Contig2420 vs. SwissProt
Match: RS251_ARATH (40S ribosomal protein S25-1 OS=Arabidopsis thaliana GN=RPS25A PE=2 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 1.044e-27
Identity = 61/70 (87.14%), Postives = 67/70 (95.71%), Query Frame = 1

Query:  160 VNNMVLFDQATYDKLISEAPKYKLITPSVLSDRLRVNGSLARKAIRDLMARGLIRMVSSHSSQQIYTRAT 369
            VNNMVLFDQATYDKL+SEAPK+KLITPS+LSDRLR+NGSLARKAIRDLM +G IRMVS+HSSQQI TRAT
Sbjct:   36 VNNMVLFDQATYDKLMSEAPKFKLITPSILSDRLRINGSLARKAIRDLMVKGTIRMVSTHSSQQINTRAT 105

[Close]

BLAST of Cicer_arietinum_v1_Contig2420 vs. SwissProt
Match: RS25_BRABE (40S ribosomal protein S25 OS=Branchiostoma belcheri GN=RPS25 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.615e-20
Identity = 45/70 (64.29%), Postives = 61/70 (87.14%), Query Frame = 1

Query:  160 VNNMVLFDQATYDKLISEAPKYKLITPSVLSDRLRVNGSLARKAIRDLMARGLIRMVSSHSSQQIYTRAT 369
            +NN+VLFD+ATYDKL  E P YKLITPSV+S+RL++ GSLAR A+++L ++G+I++VS HS+Q IYTRAT
Sbjct:   40 LNNLVLFDKATYDKLYKEVPSYKLITPSVVSERLKIRGSLARAALKELHSKGMIKLVSKHSAQVIYTRAT 109

[Close]

BLAST of Cicer_arietinum_v1_Contig2420 vs. SwissProt
Match: RS25_AMACR (40S ribosomal protein S25 OS=Amaranthus cruentus GN=RPS25 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.615e-20
Identity = 47/71 (66.20%), Postives = 61/71 (85.92%), Query Frame = 1

Query:  160 VNNMVLFDQATYDKLISEAPKYKLITPSVLSDRLRVNGSLARKAIRDLMARGLIRMVSSHSSQQIYTRATN 372
            VNN+VLFD AT+DKL+SEA K K++T + LS+R R+NGSLAR+AIR+L++RG I+MV  HSS QIYTR+TN
Sbjct:   36 VNNLVLFDNATFDKLLSEAGKQKVVTAATLSERFRINGSLARRAIRELVSRGAIKMVCHHSSLQIYTRSTN 106

[Close]

BLAST of Cicer_arietinum_v1_Contig2420 vs. SwissProt
Match: RS25_SHEEP (40S ribosomal protein S25 OS=Ovis aries GN=RPS25 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.786e-19
Identity = 43/70 (61.43%), Postives = 60/70 (85.71%), Query Frame = 1

Query:  160 VNNMVLFDQATYDKLISEAPKYKLITPSVLSDRLRVNGSLARKAIRDLMARGLIRMVSSHSSQQIYTRAT 369
            +NN+VLFD+ATYDKL  E P YKLITP+V+S+RL++ GSLAR A+++L+++GLI++VS H +Q IYTR T
Sbjct:   44 LNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNT 113

[Close]

BLAST of Cicer_arietinum_v1_Contig2420 vs. SwissProt
Match: RS25_RAT (40S ribosomal protein S25 OS=Rattus norvegicus GN=Rps25 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.786e-19
Identity = 43/70 (61.43%), Postives = 60/70 (85.71%), Query Frame = 1

Query:  160 VNNMVLFDQATYDKLISEAPKYKLITPSVLSDRLRVNGSLARKAIRDLMARGLIRMVSSHSSQQIYTRAT 369
            +NN+VLFD+ATYDKL  E P YKLITP+V+S+RL++ GSLAR A+++L+++GLI++VS H +Q IYTR T
Sbjct:   44 LNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNT 113

[Close]

BLAST of Cicer_arietinum_v1_Contig2420 vs. SwissProt
Match: RS25_MOUSE (40S ribosomal protein S25 OS=Mus musculus GN=Rps25 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.786e-19
Identity = 43/70 (61.43%), Postives = 60/70 (85.71%), Query Frame = 1

Query:  160 VNNMVLFDQATYDKLISEAPKYKLITPSVLSDRLRVNGSLARKAIRDLMARGLIRMVSSHSSQQIYTRAT 369
            +NN+VLFD+ATYDKL  E P YKLITP+V+S+RL++ GSLAR A+++L+++GLI++VS H +Q IYTR T
Sbjct:   44 LNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNT 113

[Close]

BLAST of Cicer_arietinum_v1_Contig2420 vs. TrEMBL
Match: A9NT78_PICSI (Putative uncharacterized protein OS=Picea sitchensis PE=4 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.890e-30
Identity = 66/72 (91.67%), Postives = 72/72 (100.00%), Query Frame = 1

Query:  160 VNNMVLFDQATYDKLISEAPKYKLITPSVLSDRLRVNGSLARKAIRDLMARGLIRMVSSHSSQQIYTRATNT 375
            VNNMVLFDQATYDKLISEAPKYKLITPS+LSDRLR+NGSLARKAI+DLMA+GLIRM+S+HSSQQIYTRATNT
Sbjct:   37 VNNMVLFDQATYDKLISEAPKYKLITPSILSDRLRINGSLARKAIKDLMAKGLIRMISAHSSQQIYTRATNT 108

[Close]

BLAST of Cicer_arietinum_v1_Contig2420 vs. TrEMBL
Match: B9RH67_RICCO (40S ribosomal protein S25-1, putative OS=Ricinus communis GN=RCOM_1447530 PE=4 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 8.409e-30
Identity = 66/72 (91.67%), Postives = 72/72 (100.00%), Query Frame = 1

Query:  160 VNNMVLFDQATYDKLISEAPKYKLITPSVLSDRLRVNGSLARKAIRDLMARGLIRMVSSHSSQQIYTRATNT 375
            VNNMVLFDQATYDKL+SEAPKYKLITPS+LSDRLRVNGSLAR+AIR+LMARGLIRMVS+H+SQQIYTRATNT
Sbjct:   37 VNNMVLFDQATYDKLLSEAPKYKLITPSILSDRLRVNGSLARRAIRELMARGLIRMVSAHASQQIYTRATNT 108

[Close]

BLAST of Cicer_arietinum_v1_Contig2420 vs. TrEMBL
Match: A9NKH7_PICSI (Putative uncharacterized protein OS=Picea sitchensis PE=4 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.098e-29
Identity = 65/72 (90.28%), Postives = 71/72 (98.61%), Query Frame = 1

Query:  160 VNNMVLFDQATYDKLISEAPKYKLITPSVLSDRLRVNGSLARKAIRDLMARGLIRMVSSHSSQQIYTRATNT 375
            VNNMVLFDQATYDKL+SEAPKYKLITPS+LSDRLR+NGSLARKAI+DLMARG IRM+S+HSSQQIYTRATNT
Sbjct:   37 VNNMVLFDQATYDKLLSEAPKYKLITPSILSDRLRINGSLARKAIKDLMARGSIRMISAHSSQQIYTRATNT 108

[Close]

BLAST of Cicer_arietinum_v1_Contig2420 vs. TrEMBL
Match: B7FGM7_MEDTR (Putative uncharacterized protein OS=Medicago truncatula PE=4 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.873e-29
Identity = 65/72 (90.28%), Postives = 71/72 (98.61%), Query Frame = 1

Query:  160 VNNMVLFDQATYDKLISEAPKYKLITPSVLSDRLRVNGSLARKAIRDLMARGLIRMVSSHSSQQIYTRATNT 375
            VNNMVLFDQ TYDKL++EAPKYKLITPSVLSDRLR+NGSLAR+AIRDLMARGLIR+VS+HSSQQIYTRATNT
Sbjct:   36 VNNMVLFDQGTYDKLLTEAPKYKLITPSVLSDRLRINGSLARRAIRDLMARGLIRLVSAHSSQQIYTRATNT 107

[Close]

BLAST of Cicer_arietinum_v1_Contig2420 vs. TrEMBL
Match: A9PAD1_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=4 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.447e-29
Identity = 66/72 (91.67%), Postives = 71/72 (98.61%), Query Frame = 1

Query:  160 VNNMVLFDQATYDKLISEAPKYKLITPSVLSDRLRVNGSLARKAIRDLMARGLIRMVSSHSSQQIYTRATNT 375
            VNNMVLFDQATYDKL+SEAPKYKLITPSVLSDRLR++GSLARKAI+DLMARG IRMVSSH+SQQIYTRATNT
Sbjct:   37 VNNMVLFDQATYDKLLSEAPKYKLITPSVLSDRLRISGSLARKAIKDLMARGSIRMVSSHASQQIYTRATNT 108

[Close]

BLAST of Cicer_arietinum_v1_Contig2420 vs. TrEMBL
Match: D5L5T4_9GENT (Putative 40S ribosomal protein S25-1 OS=Gardenia jasminoides PE=4 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.174e-29
Identity = 65/72 (90.28%), Postives = 72/72 (100.00%), Query Frame = 1

Query:  160 VNNMVLFDQATYDKLISEAPKYKLITPSVLSDRLRVNGSLARKAIRDLMARGLIRMVSSHSSQQIYTRATNT 375
            VNNMVLFD+ATYDKL+SEAPKYKLITPSVLSDRLR++GSLARKAIR+LMARGLIRMVS+H+SQQIYTRATNT
Sbjct:   37 VNNMVLFDKATYDKLLSEAPKYKLITPSVLSDRLRISGSLARKAIRELMARGLIRMVSAHASQQIYTRATNT 108

[Close]

BLAST of Cicer_arietinum_v1_Contig2420 vs. TrEMBL
Match: B7FH10_MEDTR (Putative uncharacterized protein OS=Medicago truncatula PE=4 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.174e-29
Identity = 64/72 (88.89%), Postives = 71/72 (98.61%), Query Frame = 1

Query:  160 VNNMVLFDQATYDKLISEAPKYKLITPSVLSDRLRVNGSLARKAIRDLMARGLIRMVSSHSSQQIYTRATNT 375
            VNNMVLFDQ TYDKL++EAPKYKLITPSVLSDRLR+NGSLAR+AIRDLMA+GLIR+VS+HSSQQIYTRATNT
Sbjct:   36 VNNMVLFDQGTYDKLLTEAPKYKLITPSVLSDRLRINGSLARRAIRDLMAKGLIRLVSAHSSQQIYTRATNT 107

[Close]

BLAST of Cicer_arietinum_v1_Contig2420 vs. TrEMBL
Match: A9PDP8_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_1076643 PE=4 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.451e-29
Identity = 65/72 (90.28%), Postives = 71/72 (98.61%), Query Frame = 1

Query:  160 VNNMVLFDQATYDKLISEAPKYKLITPSVLSDRLRVNGSLARKAIRDLMARGLIRMVSSHSSQQIYTRATNT 375
            VNNMVLFDQATYDKL+SEAPKYKLITPSVLSDR+R++GSLARKAIR+LMARG IRMVSSH+SQQIYTRATNT
Sbjct:   37 VNNMVLFDQATYDKLLSEAPKYKLITPSVLSDRMRISGSLARKAIRELMARGSIRMVSSHASQQIYTRATNT 108

[Close]

BLAST of Cicer_arietinum_v1_Contig2420 vs. TrEMBL
Match: D7U4K6_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_38.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00023806001 PE=4 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.119e-29
Identity = 64/71 (90.14%), Postives = 70/71 (98.59%), Query Frame = 1

Query:  160 VNNMVLFDQATYDKLISEAPKYKLITPSVLSDRLRVNGSLARKAIRDLMARGLIRMVSSHSSQQIYTRATN 372
            VNNMVLFDQA YDKL+SEAPKYKLITPS+LSDRLR+NGSLAR+AI++LMARGLIRMVSSHSSQQIYTRATN
Sbjct:  184 VNNMVLFDQAAYDKLLSEAPKYKLITPSILSDRLRINGSLARRAIKELMARGLIRMVSSHSSQQIYTRATN 254

[Close]

BLAST of Cicer_arietinum_v1_Contig2420 vs. TrEMBL
Match: C6SWX1_SOYBN (Putative uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.119e-29
Identity = 64/72 (88.89%), Postives = 70/72 (97.22%), Query Frame = 1

Query:  160 VNNMVLFDQATYDKLISEAPKYKLITPSVLSDRLRVNGSLARKAIRDLMARGLIRMVSSHSSQQIYTRATNT 375
            VNNMVLFDQ TYDKL+SEAPKYKLITPS+LSDRLR+NGSLARKAIR+LMARG IRMVS+H+SQQIYTRATNT
Sbjct:   37 VNNMVLFDQGTYDKLLSEAPKYKLITPSILSDRLRINGSLARKAIRELMARGSIRMVSAHASQQIYTRATNT 108

[Close]

BLAST of Cicer_arietinum_v1_Contig2420 vs. TAIR peptide
Match: AT2G21580.2 (| Symbols: | Ribosomal protein S25 family protein | chr2:9236629-9237510 FORWARD LENGTH=107)

HSP 1 Score: 128.642 bits (322), Expect = 2.574e-30
Identity = 61/72 (84.72%), Postives = 71/72 (98.61%), Query Frame = 1

Query:  160 VNNMVLFDQATYDKLISEAPKYKLITPSVLSDRLRVNGSLARKAIRDLMARGLIRMVSSHSSQQIYTRATNT 375
            VNNMVLFDQ TYDKL++EAPK+KLITPS+LSDR+R+NGSLAR+AIR+LMA+GLIRMVS+HSSQQIYTRATNT
Sbjct:   36 VNNMVLFDQGTYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAKGLIRMVSAHSSQQIYTRATNT 107

[Close]

BLAST of Cicer_arietinum_v1_Contig2420 vs. TAIR peptide
Match: AT2G21580.1 (| Symbols: | Ribosomal protein S25 family protein | chr2:9236629-9237510 FORWARD LENGTH=108)

HSP 1 Score: 128.642 bits (322), Expect = 2.574e-30
Identity = 61/72 (84.72%), Postives = 71/72 (98.61%), Query Frame = 1

Query:  160 VNNMVLFDQATYDKLISEAPKYKLITPSVLSDRLRVNGSLARKAIRDLMARGLIRMVSSHSSQQIYTRATNT 375
            VNNMVLFDQ TYDKL++EAPK+KLITPS+LSDR+R+NGSLAR+AIR+LMA+GLIRMVS+HSSQQIYTRATNT
Sbjct:   37 VNNMVLFDQGTYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAKGLIRMVSAHSSQQIYTRATNT 108

[Close]

BLAST of Cicer_arietinum_v1_Contig2420 vs. TAIR peptide
Match: AT4G39200.2 (| Symbols: | Ribosomal protein S25 family protein | chr4:18257464-18258464 FORWARD LENGTH=107)

HSP 1 Score: 127.872 bits (320), Expect = 4.390e-30
Identity = 60/72 (83.33%), Postives = 72/72 (100.00%), Query Frame = 1

Query:  160 VNNMVLFDQATYDKLISEAPKYKLITPSVLSDRLRVNGSLARKAIRDLMARGLIRMVSSHSSQQIYTRATNT 375
            VNNMVLFDQATYDKL++EAPK+KLITPS+LSDR+R+NGSLAR+AIR+LMA+G+IRMV++HSSQQIYTRATNT
Sbjct:   36 VNNMVLFDQATYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAKGVIRMVAAHSSQQIYTRATNT 107

[Close]

BLAST of Cicer_arietinum_v1_Contig2420 vs. TAIR peptide
Match: AT4G39200.1 (| Symbols: | Ribosomal protein S25 family protein | chr4:18257464-18258464 FORWARD LENGTH=108)

HSP 1 Score: 127.872 bits (320), Expect = 4.390e-30
Identity = 60/72 (83.33%), Postives = 72/72 (100.00%), Query Frame = 1

Query:  160 VNNMVLFDQATYDKLISEAPKYKLITPSVLSDRLRVNGSLARKAIRDLMARGLIRMVSSHSSQQIYTRATNT 375
            VNNMVLFDQATYDKL++EAPK+KLITPS+LSDR+R+NGSLAR+AIR+LMA+G+IRMV++HSSQQIYTRATNT
Sbjct:   37 VNNMVLFDQATYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAKGVIRMVAAHSSQQIYTRATNT 108

[Close]

BLAST of Cicer_arietinum_v1_Contig2420 vs. TAIR peptide
Match: AT4G34555.1 (| Symbols: | Ribosomal protein S25 family protein | chr4:16504381-16505339 REVERSE LENGTH=108)

HSP 1 Score: 126.331 bits (316), Expect = 1.277e-29
Identity = 61/71 (85.92%), Postives = 70/71 (98.59%), Query Frame = 1

Query:  160 VNNMVLFDQATYDKLISEAPKYKLITPSVLSDRLRVNGSLARKAIRDLMARGLIRMVSSHSSQQIYTRATN 372
            VNNMVLFDQATYDKL+SEAPK+KLITPS+LSDRLR+NGSLAR+AIR+LMA+G IRMVS+HSSQQIYTRAT+
Sbjct:   37 VNNMVLFDQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRELMAKGTIRMVSAHSSQQIYTRATH 107

[Close]

BLAST of Cicer_arietinum_v1_Contig2420 vs. TAIR peptide
Match: AT2G16360.1 (| Symbols: | Ribosomal protein S25 family protein | chr2:7076713-7077366 REVERSE LENGTH=125)

HSP 1 Score: 123.25 bits (308), Expect = 1.081e-28
Identity = 61/70 (87.14%), Postives = 67/70 (95.71%), Query Frame = 1

Query:  160 VNNMVLFDQATYDKLISEAPKYKLITPSVLSDRLRVNGSLARKAIRDLMARGLIRMVSSHSSQQIYTRAT 369
            VNNMVLFDQATYDKL+SEAPK+KLITPS+LSDRLR+NGSLARKAIRDLM +G IRMVS+HSSQQI TRAT
Sbjct:   53 VNNMVLFDQATYDKLMSEAPKFKLITPSILSDRLRINGSLARKAIRDLMVKGTIRMVSTHSSQQINTRAT 122

The following BLAST results are available for this feature:

BLAST of Cicer_arietinum_v1_Contig2420 vs. SwissProt
BLAST of Cicer_arietinum_v1_Contig2420 vs. TrEMBL
BLAST of Cicer_arietinum_v1_Contig2420 vs. TAIR peptide

BLAST of Cicer_arietinum_v1_Contig2420 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 10


Match Name	E-value	Identity	Description
RS25_SOLLC	1.116e-29	88.89	40S ribosomal protein S25 OS=Solanum lycopersicum ...	[more]
RS252_ARATH	2.486e-29	84.72	40S ribosomal protein S25-2 OS=Arabidopsis thalian...	[more]
RS254_ARATH	4.241e-29	83.33	40S ribosomal protein S25-4 OS=Arabidopsis thalian...	[more]
RS253_ARATH	1.234e-28	85.92	40S ribosomal protein S25-3 OS=Arabidopsis thalian...	[more]
RS251_ARATH	1.044e-27	87.14	40S ribosomal protein S25-1 OS=Arabidopsis thalian...	[more]
RS25_BRABE	1.615e-20	64.29	40S ribosomal protein S25 OS=Branchiostoma belcher...	[more]
RS25_AMACR	1.615e-20	66.20	40S ribosomal protein S25 OS=Amaranthus cruentus G...	[more]
RS25_SHEEP	1.786e-19	61.43	40S ribosomal protein S25 OS=Ovis aries GN=RPS25 P...	[more]
RS25_RAT	1.786e-19	61.43	40S ribosomal protein S25 OS=Rattus norvegicus GN=...	[more]
RS25_MOUSE	1.786e-19	61.43	40S ribosomal protein S25 OS=Mus musculus GN=Rps25...	[more]

BLAST of Cicer_arietinum_v1_Contig2420 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
A9NT78_PICSI	2.890e-30	91.67	Putative uncharacterized protein OS=Picea sitchens...	[more]
B9RH67_RICCO	8.409e-30	91.67	40S ribosomal protein S25-1, putative OS=Ricinus c...	[more]
A9NKH7_PICSI	1.098e-29	90.28	Putative uncharacterized protein OS=Picea sitchens...	[more]
B7FGM7_MEDTR	1.873e-29	90.28	Putative uncharacterized protein OS=Medicago trunc...	[more]
A9PAD1_POPTR	2.447e-29	91.67	Putative uncharacterized protein OS=Populus tricho...	[more]
D5L5T4_9GENT	4.174e-29	90.28	Putative 40S ribosomal protein S25-1 OS=Gardenia j...	[more]
B7FH10_MEDTR	4.174e-29	88.89	Putative uncharacterized protein OS=Medicago trunc...	[more]
A9PDP8_POPTR	5.451e-29	90.28	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
D7U4K6_VITVI	7.119e-29	90.14	Whole genome shotgun sequence of line PN40024, sca...	[more]
C6SWX1_SOYBN	7.119e-29	88.89	Putative uncharacterized protein OS=Glycine max PE...	[more]

BLAST of Cicer_arietinum_v1_Contig2420 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 6


Match Name	E-value	Identity	Description
AT2G21580.2	2.574e-30	84.72	\| Symbols: \| Ribosomal protein S25 family protein...	[more]
AT2G21580.1	2.574e-30	84.72	\| Symbols: \| Ribosomal protein S25 family protein...	[more]
AT4G39200.2	4.390e-30	83.33	\| Symbols: \| Ribosomal protein S25 family protein...	[more]
AT4G39200.1	4.390e-30	83.33	\| Symbols: \| Ribosomal protein S25 family protein...	[more]
AT4G34555.1	1.277e-29	85.92	\| Symbols: \| Ribosomal protein S25 family protein...	[more]
AT2G16360.1	1.081e-28	87.14	\| Symbols: \| Ribosomal protein S25 family protein...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004977	Ribosomal protein S25	PANTHER	PTHR12850	FAMILY NOT NAMED	coord: 11..122 score: 1.7
IPR004977	Ribosomal protein S25	PFAM	PF03297	Ribosomal_S25	coord: 15..120 score: 6.2
None	No IPR available	PANTHER	PTHR12850:SF4	SUBFAMILY NOT NAMED	coord: 11..122 score: 1.7
None	No IPR available	SEG	seg	seg	coord: 18..50 score
None	No IPR available	SEG	seg	seg	coord: 37..53 score
None	No IPR available	SEG	seg	seg	coord: 28..44 score

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>Cicer_arietinum_v1_Contig2420 ID=Cicer_arietinum_v1_Contig2420; Name=Cicer_arietinum_v1_Contig2420; organism=Cicer arietinum; type=contig; length=621bp
GATCGATAACTCGCGCCTCTGTCTAAGACCTTCGTTCATCCAACCGATCT
CATGGCTCCAAAGAAGGATAAGGCTCCTCCACCTTCCTCCAAGCCAGCCA
AATCTGGTGGCGGCAAGCAGAAGAAGAAGAAGTGGAGCAAGGGAAAGCAA
AAGGAGAAGGTGAATAACATGGTGCTCTTTGATCAGGCTACCTATGACAA
GCTCATATCTGAAGCACCCAAATACAAGCTCATCACTCCTTCAGTTCTCT
CTGATCGTTTGAGGGTTAATGGTTCTCTTGCAAGGAAGGCTATTAGAGAT
TTGATGGCTAGAGGTTTAATCAGGATGGTATCTTCCCATTCAAGTCAGCA
GATTTACACCAGGGCTACAAACACCTAAGTGTAGTACCGATCATAATTTG
CATGCAGTGTTGGTAGAATTAGCTATGTATTGTTCTTTTAAACTTTGAGA
TGCACATTTTGCCAGCTTGTATCAGTTTTGGCATCTATCTATTATCGTTT
TTGGTATTCTGGCAGTTCTTTTCTTCTTGTTTTATTTAGGTTAATTACTG
TTGATTGAGATTCATTTTGAAAGAGAAATCTGGACACAGACCATATATTT
TTCCGGTTTGAGTTTTAAAAT

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR004977	Ribosomal_eS25

Search form

Cicer_arietinum_v1_Contig2420