Cicer_arietinum_v1_Contig2511

Contig Overview
NameCicer_arietinum_v1_Contig2511
Unique NameCicer_arietinum_v1_Contig2511
Typecontig
OrganismCicer arietinum (chickpea)
Sequence length714
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
GR397080ESTGR397080:1..483 +
HO063682ESTHO063682:98..534 -
GR394867ESTGR394867:28..609 +
GR396385ESTGR396385:44..543 -
HO063257ESTHO063257:80..617 +
HO063643ESTHO063643:100..615 +
HO062664ESTHO062664:117..616 -
GR396334ESTGR396334:264..616 +
HO063432ESTHO063432:121..617 +
GR396386ESTGR396386:470..606 -
HO063443ESTHO063443:153..620 +
HO063520ESTHO063520:112..717 -
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Cicer arietinum unigene v1Cicer arietinum unigene v1contig
Analyses
This contig is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum unigene v12010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Trembl2010-12-28
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
GR397080GR397080Cicer arietinumEST
HO063682HO063682Cicer arietinumEST
GR394867GR394867Cicer arietinumEST
GR396385GR396385Cicer arietinumEST
HO063257HO063257Cicer arietinumEST
HO063643HO063643Cicer arietinumEST
HO062664HO062664Cicer arietinumEST
GR396334GR396334Cicer arietinumEST
HO063432HO063432Cicer arietinumEST
GR396386GR396386Cicer arietinumEST
HO063443HO063443Cicer arietinumEST
HO063520HO063520Cicer arietinumEST


Homology
BLAST of Cicer_arietinum_v1_Contig2511 vs. TrEMBL
Match: B9MZ92_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_595374 PE=4 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.668e-12
Identity = 48/90 (53.33%), Postives = 56/90 (62.22%), Query Frame = 1
Query:  145 IERSSSIEREPRTLGIDQIQSARALAMYIFNTKTFEEASRIFTEGLEPV---VSGACSMGSVNMNSGEELELMAQQASLEAFRDIASAPF 405
            I+R SS+E EPRTL +DQIQ AR  A+Y+ NT++ EEA  IFTEGLEPV           S  M S +ELE    Q  L   RDIASAPF
Sbjct:   10 IQRKSSMESEPRTLTMDQIQFAREAALYVVNTRSIEEALSIFTEGLEPVGGRNGDRMKDMSREMQSVDELE----QRQLTEIRDIASAPF 95          
BLAST of Cicer_arietinum_v1_Contig2511 vs. TrEMBL
Match: B9RU44_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1461910 PE=4 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.178e-12
Identity = 42/87 (48.28%), Postives = 53/87 (60.92%), Query Frame = 1
Query:  145 IERSSSIEREPRTLGIDQIQSARALAMYIFNTKTFEEASRIFTEGLEPVVSGACSMGSVNMNSGEELELMAQQASLEAFRDIASAPF 405
            ++R SSIE EPRTL   Q Q AR  A+Y+ NT++ EEA  IFT+GLEPVVS A   GS     GE + +       +  RD+ SAPF
Sbjct:   11 LDRKSSIESEPRTLTNSQFQGARDAALYVVNTRSIEEAENIFTQGLEPVVSVAQGRGSSMDLEGEFICIRPPLQLPDGIRDVVSAPF 97          
BLAST of Cicer_arietinum_v1_Contig2511 vs. TrEMBL
Match: B9HEJ9_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_819750 PE=4 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.108e-11
Identity = 44/101 (43.56%), Postives = 57/101 (56.44%), Query Frame = 1
Query:  130 SMLPHIERSSSIEREPRTLGIDQIQSARALAMYIFNTKTFEEASRIFTEGLEPVVSGACSMGSV--NMNSGEELELMA-------QQASLEAFRDIASAPF 405
            +M   I+R +SIE EPRTL ++QIQ AR  A+Y+ NT + E A  IFTEG+EPVV  A   G     M   +E + +        +   L   RDIASAPF
Sbjct:    7 TMAARIDRKTSIEFEPRTLRMEQIQFAREAALYVLNTSSIEAALSIFTEGVEPVVGVARRNGDAINGMEMSKEKQYLENEDEDEDEDLQLPGIRDIASAPF 107          
BLAST of Cicer_arietinum_v1_Contig2511 vs. TrEMBL
Match: D7U4E7_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_44.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00026494001 PE=4 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.747e-10
Identity = 38/75 (50.67%), Postives = 46/75 (61.33%), Query Frame = 1
Query:  181 TLGIDQIQSARALAMYIFNTKTFEEASRIFTEGLEPVVSGACSMGSVNMNSGEELELMAQQASLEAFRDIASAPF 405
            TL I+Q+Q AR  A+Y+ NT++ EEA  IFTEGLEPV S     G   MN GEE +  A+       RDI SAPF
Sbjct:    2 TLTINQLQFAREAALYVMNTRSMEEALSIFTEGLEPVHSVLKRNGDSMMNLGEEFDREAKYLPTSNSRDIVSAPF 76          
BLAST of Cicer_arietinum_v1_Contig2511 vs. TrEMBL
Match: C5YT81_SORBI (Putative uncharacterized protein Sb08g005220 OS=Sorghum bicolor GN=Sb08g005220 PE=4 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 5.022e-9
Identity = 42/113 (37.17%), Postives = 63/113 (55.75%), Query Frame = 1
Query:  151 RSSSIEREPRTLGIDQIQSARALAMYIFNTKTFEEASRIFTEGLEPVVSGACSM---GSVNMNSGEELELMA-------------------------QQASLEAFRDIASAPF 405
            R SSIE EP+TL +DQI+ AR  A+Y+ +TKT EEA RIFTEGL+PV     ++    S++ +S +++EL                           ++ S++  RD+A+APF
Sbjct:   24 RMSSIEWEPKTLTLDQIKFAREAALYVVSTKTEEEAIRIFTEGLKPVQMTTATVRKSSSIDSSSDDDVELGCCCCCSSAGSNKGCCGGGSKGGRRGRRRRSMDDDRDVATAPF 136          
BLAST of Cicer_arietinum_v1_Contig2511 vs. TrEMBL
Match: Q2QWP2_ORYSJ (Expressed protein OS=Oryza sativa subsp. japonica GN=Os12g0187800 PE=4 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 9.471e-8
Identity = 36/81 (44.44%), Postives = 50/81 (61.73%), Query Frame = 1
Query:  151 RSSSIEREPRTLGIDQIQSARALAMYIFNTKTFEEASRIFTEGLEPV-VSGACSMGSVNMNSGEELELMAQQASLEAFRDI 390
            R +SIE EP+TL +DQ++ AR  A+Y+ +TK  EEA RIFTEGL+PV ++  C  G      G +   MA  +S +   DI
Sbjct:   18 RMASIEMEPKTLTLDQLKFAREAALYVLSTKPAEEAIRIFTEGLKPVHLAAGCGGG------GRKSSTMAADSSSDDDLDI 92          
BLAST of Cicer_arietinum_v1_Contig2511 vs. TrEMBL
Match: B4FHJ4_MAIZE (Putative uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 2.755e-7
Identity = 35/72 (48.61%), Postives = 50/72 (69.44%), Query Frame = 1
Query:  151 RSSSIEREPRTLGIDQIQSARALAMYIFNTKTFEEASRIFTEGLEPVVSGACSMGSVNMNSG---EELELMA 357
            R SSIE EP+TL + QI+ AR  A+Y+ +TKT +EA RIFTEGL+PV   A S  + +++S    +++EL A
Sbjct:   22 RMSSIEWEPKTLTLAQIKFAREAALYVVSTKTEQEAIRIFTEGLKPVRIMAVSKSTSSIDSSSSDDDVELGA 93          
BLAST of Cicer_arietinum_v1_Contig2511 vs. TrEMBL
Match: A2ZIR4_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_37716 PE=4 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 6.139e-7
Identity = 28/47 (59.57%), Postives = 36/47 (76.60%), Query Frame = 1
Query:  151 RSSSIEREPRTLGIDQIQSARALAMYIFNTKTFEEASRIFTEGLEPV 291
            R  SIE EP+TL +DQ++ AR  A+Y+ +TK  EEA RIFTEGL+PV
Sbjct:   18 RMPSIEMEPKTLTLDQLKFAREAALYVLSTKPAEEAIRIFTEGLKPV 64          
BLAST of Cicer_arietinum_v1_Contig2511 vs. TAIR peptide
Match: AT4G33467.2 (| Symbols: | unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:16101691-16102084 REVERSE LENGTH=101)

HSP 1 Score: 53.1434 bits (126), Expect = 1.740e-7
Identity = 25/44 (56.82%), Postives = 33/44 (75.00%), Query Frame = 1
Query:  145 IERSSSIEREPRTLGIDQIQSARALAMYIFNTKTFEEASRIFTE 276
            +ER SSIE EP TL +DQ+++AR  A+Y+  TKT EEA  IFT+
Sbjct:   10 LERRSSIETEPMTLHLDQLENAREEALYVMKTKTMEEAMDIFTK 53          
BLAST of Cicer_arietinum_v1_Contig2511 vs. TAIR peptide
Match: AT4G33467.1 (| Symbols: | unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:16101691-16102084 REVERSE LENGTH=102)

HSP 1 Score: 53.1434 bits (126), Expect = 1.740e-7
Identity = 25/44 (56.82%), Postives = 33/44 (75.00%), Query Frame = 1
Query:  145 IERSSSIEREPRTLGIDQIQSARALAMYIFNTKTFEEASRIFTE 276
            +ER SSIE EP TL +DQ+++AR  A+Y+  TKT EEA  IFT+
Sbjct:   10 LERRSSIETEPMTLHLDQLENAREEALYVMKTKTMEEAMDIFTK 53          
The following BLAST results are available for this feature:
BLAST of Cicer_arietinum_v1_Contig2511 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 8
Match NameE-valueIdentityDescription
B9MZ92_POPTR1.668e-1253.33Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
B9RU44_RICCO2.178e-1248.28Putative uncharacterized protein OS=Ricinus commun... [more]
B9HEJ9_POPTR4.108e-1143.56Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
D7U4E7_VITVI7.747e-1050.67Whole genome shotgun sequence of line PN40024, sca... [more]
C5YT81_SORBI5.022e-937.17Putative uncharacterized protein Sb08g005220 OS=So... [more]
Q2QWP2_ORYSJ9.471e-844.44Expressed protein OS=Oryza sativa subsp. japonica ... [more]
B4FHJ4_MAIZE2.755e-748.61Putative uncharacterized protein OS=Zea mays PE=2 ... [more]
A2ZIR4_ORYSI6.139e-759.57Putative uncharacterized protein OS=Oryza sativa s... [more]
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BLAST of Cicer_arietinum_v1_Contig2511 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 2
Match NameE-valueIdentityDescription
AT4G33467.21.740e-756.82| Symbols: | unknown protein; Has 25 Blast hits t... [more]
AT4G33467.11.740e-756.82| Symbols: | unknown protein; Has 25 Blast hits t... [more]
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Sequences
The following sequences are available for this feature:

contig sequence

>Cicer_arietinum_v1_Contig2511 ID=Cicer_arietinum_v1_Contig2511; Name=Cicer_arietinum_v1_Contig2511; organism=Cicer arietinum; type=contig; length=714bp
GATTCCACAACAACAACTATAGACGAAAGTTATAATTGAGAGATTTTTAT
ATTAGTTAAGGTTTGCATTTCATTTTTGAAAAAATATCTTATACAATATA
TCACACAAAAAATGGAGGTACCTATGCCGTCTATGTTGCCACACATTGAA
AGAAGTTCATCGATTGAAAGGGAGCCTAGAACTCTAGGTATCGACCAAAT
TCAATCTGCAAGGGCTTTAGCAATGTATATATTTAACACAAAGACCTTTG
AAGAAGCTTCCAGAATTTTCACCGAGGGATTGGAACCAGTGGTTAGTGGT
GCTTGCAGTATGGGATCCGTTAACATGAATTCGGGTGAAGAATTGGAACT
AATGGCCCAACAAGCATCACTAGAAGCATTCAGGGACATAGCATCTGCAC
CTTTCTAGCTTACTCAACTTAAATATATAACTCATTAAGTGTTCATATGA
TCTTGAATTTAATATACTTAGTTAGCTTTTGTATATATATAGATATATGA
TAGTATATATATGCCAACAATTCCATTTGATAATTTATTCATCTTTCTTG
GATGCCTTTTTCCATTATGATTTTGTACACCACAAATAATTATAAGAATA
TTTGATCTTGCTTCATTATGTGTTAAAATCATGAAGTTGATTTTCGTTAG
GTTTCCAAAACCGAAGAGTTGTGTATTTGGTTTTTCCTAAGGAATCAAAT
CATAACTTTTTTTT
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